Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.L06YLZ Arachis hypogaea HOM05D000245 ORTHO05D023715 9.0e-60 233.4 120 100.0
arahy.Tifrunner.gnm1.ann1.45NR7C Arachis hypogaea HOM05D000245 ORTHO05D000020 2.7e-56 221.9 113 100.0
arahy.Tifrunner.gnm1.ann1.ER44IM Arachis hypogaea HOM05D000245 ORTHO05D000020 2.5e-54 215.3 113 95.6
arahy.Tifrunner.gnm1.ann1.VXJX4E Arachis hypogaea HOM05D000245 ORTHO05D000020 3.8e-26 121.7 107 64.5
Glyma.09G041500 Glycine max HOM05D000245 ORTHO05D000020 1.9e-25 119.4 113 59.3
Lj6g0010495 Lotus japonicus HOM05D000245 ORTHO05D000020 1.8e-23 112.8 122 51.6
VMungo1309G2487 Vigna mungo HOM05D000245 ORTHO05D000020 2.6e-22 109.0 113 55.8
Lalb_Chr18g0059111 Lupinus albus HOM05D000245 ORTHO05D000020 4.8e-21 104.8 120 52.5
Phvul.009G251600 Phaseolus vulgaris HOM05D000245 ORTHO05D000020 1.6e-19 99.8 114 50.9
Dinv44344 Davidia involucrata HOM05D000245 ORTHO05D000020 2.9e-18 95.5 113 45.1
FAN07G2364 Fragaria x ananassa HOM05D000245 ORTHO05D000020 2.9e-18 95.5 114 48.2
Dinv29716 Davidia involucrata HOM05D000245 ORTHO05D000020 1.1e-17 93.6 113 49.6
Potri.008G210900 Populus trichocarpa HOM05D000245 ORTHO05D000020 2.5e-17 92.4 115 47.8
Gorai.011G193600 Gossypium raimondii HOM05D000245 ORTHO05D000020 3.2e-17 92.0 113 48.7
Psat1g157560 Pisum sativum HOM05D000245 ORTHO05D000020 4.2e-17 91.7 115 53.0
TPR.G22301 Trifolium pratense HOM05D000245 ORTHO05D000020 4.2e-17 91.7 113 52.2
Gohir.D10G173000 Gossypium hirsutum HOM05D000245 ORTHO05D000020 9.4e-17 90.5 113 47.8
Medtr2g435590 Medicago truncatula HOM05D000245 ORTHO05D000020 1.2e-16 90.1 115 48.7
Ca_26465_v3 Cicer arietinum L. HOM05D000245 ORTHO05D000020 2.7e-16 89.0 113 48.7
FAN12G0109 Fragaria x ananassa HOM05D000245 ORTHO05D000020 3.6e-16 88.6 118 47.5
Manes.15G009900 Manihot esculenta HOM05D000245 ORTHO05D000020 3.6e-16 88.6 116 46.6
FvH4_4g18780 Fragaria vesca HOM05D000245 ORTHO05D000020 4.7e-16 88.2 116 46.6
Gohir.A10G167000 Gossypium hirsutum HOM05D000245 ORTHO05D000020 4.7e-16 88.2 113 46.0
Potri.010G006800 Populus trichocarpa HOM05D000245 ORTHO05D000020 4.7e-16 88.2 114 43.0
FAN12G1015 Fragaria x ananassa HOM05D000245 ORTHO05D000020 6.1e-16 87.8 116 46.6
FAN17G0565 Fragaria x ananassa HOM05D000245 ORTHO05D000020 8.0e-16 87.4 120 46.7
Sabra10G0005600 Salix brachista HOM05D000245 ORTHO05D000020 8.0e-16 87.4 114 43.0
Thecc.04G290200 Theobroma cacao HOM05D000245 ORTHO05D000020 8.0e-16 87.4 113 48.7
MD16G1162800 Malus domestica HOM05D000245 ORTHO05D000020 1.4e-15 86.7 113 46.0
Atru.chr4.2915 Acer truncatum HOM05D000245 ORTHO05D000020 1.8e-15 86.3 113 45.1
Nn4g25740 Nelumbo nucifera HOM05D000245 ORTHO05D000020 3.0e-15 85.5 113 45.1
MD13G1163300 Malus domestica HOM05D000245 ORTHO05D000020 5.2e-15 84.7 113 47.8
GSVIVG01035098001 Vitis vinifera HOM05D000245 ORTHO05D000020 5.2e-15 84.7 115 45.2
Prupe.1G130300 Prunus persica HOM05D000245 ORTHO05D000020 1.5e-14 83.2 122 41.0
Manes.03G199300 Manihot esculenta HOM05D000245 ORTHO05D000020 2.6e-14 82.4 113 44.2
Glyma.15G152000 Glycine max HOM05D000245 ORTHO05D000020 7.5e-14 80.9 113 48.7
CANSAT78G2412 Cannabis sativa HOM05D000245 ORTHO05D000020 9.8e-14 80.5 126 39.7
Duzib052G0265 Durio zibethinus HOM05D000245 ORTHO05D000020 9.8e-14 80.5 113 45.1
Gohir.D09G237300 Gossypium hirsutum HOM05D000245 ORTHO05D000020 9.8e-14 80.5 119 44.5
RcHm_v2.0_Chr4g0423581 Rosa chinensis HOM05D000245 ORTHO05D000020 9.8e-14 80.5 113 46.0
Cfa015434 Carpinus fangiana HOM05D000245 ORTHO05D000020 1.3e-13 80.1 113 41.6
Haze_01150 Corylus avellana HOM05D000245 ORTHO05D000020 1.3e-13 80.1 113 42.5
Gohir.A09G236500 Gossypium hirsutum HOM05D000245 ORTHO05D000020 1.7e-13 79.7 116 43.1
MD16G1162900 Malus domestica HOM05D000245 ORTHO05D000020 1.7e-13 79.7 117 48.7
Duzib151G0758 Durio zibethinus HOM05D000245 ORTHO05D000020 2.8e-13 79.0 121 43.0
Sabra08G0151200 Salix brachista HOM05D000245 ORTHO05D000020 2.8e-13 79.0 119 43.7
Gorai.006G260300 Gossypium raimondii HOM05D000245 ORTHO05D000020 3.7e-13 78.6 119 42.9
PGR031G3058 Punica granatum HOM05D000245 ORTHO05D000020 3.7e-13 78.6 116 44.0
Nn3g21563 Nelumbo nucifera HOM05D000245 ORTHO05D000020 4.8e-13 78.2 113 40.7
Lalb_Chr12g0201171 Lupinus albus HOM05D000245 ORTHO05D000020 1.1e-12 77.0 116 43.1
Lalb_Chr13g0298191 Lupinus albus HOM05D000245 ORTHO05D000020 2.4e-12 75.9 116 41.4
MBI18_g21797_MAGBIO Magnolia biondii HOM05D000245 ORTHO05D000020 4.1e-12 75.1 121 38.8
Cpa.g.sc2304.1 Carica papaya HOM05D000245 ORTHO05D000020 5.4e-12 74.7 116 41.4
ATR0693G269 Amborella trichopoda HOM05D000245 ORTHO05D000020 7.0e-12 74.3 113 39.8
CiPaw.01G144900 Carya illinoinensis HOM05D000245 ORTHO05D000020 9.1e-12 73.9 114 42.1
THA.LOC104820285 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 9.1e-12 73.9 115 41.7
Lj3A825T24 Lonicera japonica HOM05D000245 ORTHO05D000020 1.2e-11 73.6 113 38.1
CSS0012838 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 2.7e-11 72.4 114 40.4
CSS0024344 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 2.7e-11 72.4 113 39.8
CSS0042430 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 2.7e-11 72.4 113 39.8
ClCG06G004930 Citrullus lanatus HOM05D000245 ORTHO05D000020 2.7e-11 72.4 113 37.2
Actinidia18633 Actinidia chinensis HOM05D000245 ORTHO05D000020 3.5e-11 72.0 115 40.0
Hma1.2p1_1352F.1_g277490 Hydrangea macrophylla HOM05D000245 ORTHO05D000020 3.5e-11 72.0 117 41.0
MELO3C021306.2 Cucumis melo HOM05D000245 ORTHO05D000020 4.5e-11 71.6 113 37.2
Nitab4.5_0012392g0020 Nicotiana tabacum HOM05D000245 ORTHO05D000020 4.5e-11 71.6 118 42.4
Actinidia40302 Actinidia chinensis HOM05D000245 ORTHO05D000020 1.0e-10 70.5 115 40.0
Rhsim04G0227500 Rhododendron simsii HOM05D000245 ORTHO05D000020 1.0e-10 70.5 113 38.9
CsaV3_6G022740 Cucumis sativus L. HOM05D000245 ORTHO05D000020 1.3e-10 70.1 113 35.4
CDE02G3331 Ceratophyllum demersum HOM05D000245 ORTHO05D000020 1.7e-10 69.7 116 39.7
TWI73G0470 Tripterygium wilfordii HOM05D000245 ORTHO05D000020 1.7e-10 69.7 115 40.9
Sc13g0003150 Simmondsia chinensis HOM05D000245 ORTHO05D000020 2.3e-10 69.3 116 39.7
AUR62015256 Chenopodium quinoa HOM05D000245 ORTHO05D000020 2.9e-10 68.9 114 40.4
Ciclev10005701m.g Citrus clementina HOM05D000245 ORTHO05D000020 2.9e-10 68.9 116 41.4
Migut.G00084 Erythranthe guttata HOM05D000245 ORTHO05D000020 3.8e-10 68.6 114 38.6
Eucgr.H03965 Eucalyptus grandis HOM05D000245 ORTHO05D000020 3.8e-10 68.6 123 35.8
CDE08G0567 Ceratophyllum demersum HOM05D000245 ORTHO05D000020 5.0e-10 68.2 116 38.8
Solyc01g065980.4 Solanum lycopersicum HOM05D000245 ORTHO05D000020 5.0e-10 68.2 114 40.4
Migut.G00125 Erythranthe guttata HOM05D000245 ORTHO05D000020 6.6e-10 67.8 114 40.4
Oeu006427.1 Olea europaea HOM05D000245 ORTHO05D000020 6.6e-10 67.8 113 38.9
Peaxi162Scf00065g01120 Petunia axillaris HOM05D000245 ORTHO05D000020 6.6e-10 67.8 115 39.1
MSTRG.10120 Avicennia marina HOM05D000245 ORTHO05D000020 1.9e-09 66.2 113 38.9
Sopen01g027380 Solanum pennellii HOM05D000245 ORTHO05D000020 1.9e-09 66.2 114 37.7
QL06p010788 Quercus lobata HOM05D000245 ORTHO05D000020 2.5e-09 65.9 117 37.6
EL10Ac3g06658 Beta vulgaris HOM05D000245 ORTHO05D000020 3.3e-09 65.5 114 39.5
Duzib212G0545 Durio zibethinus HOM05D000245 ORTHO05D000020 4.2e-09 65.1 116 40.5
Nitab4.5_0000306g0370 Nicotiana tabacum HOM05D000245 ORTHO05D000020 4.2e-09 65.1 119 39.5
SEGI_30316 Sequoiadendron giganteum HOM05D000245 ORTHO05D000020 4.2e-09 65.1 123 35.0
PGSC0003DMG400016812 Solanum tuberosum HOM05D000245 ORTHO05D000020 4.2e-09 65.1 114 37.7
CsaV3_3G014920 Cucumis sativus L. HOM05D000245 ORTHO05D000020 5.5e-09 64.7 115 44.3
PGR004G2091 Punica granatum HOM05D000245 ORTHO05D000020 5.5e-09 64.7 114 36.0
Aa31LG8G3840 Aethionema arabicum HOM05D000245 ORTHO05D000020 7.2e-09 64.3 118 37.3
BolC1t04723H Brassica oleracea HOM05D000245 ORTHO05D000020 7.2e-09 64.3 119 36.1
Ah.13g074790 Amaranthus hybridus HOM05D000245 ORTHO05D000020 9.5e-09 63.9 114 40.4
C01p47540 Brassica napus HOM05D000245 ORTHO05D000020 9.5e-09 63.9 119 35.3
PSO170G4290 Papaver somniferum HOM05D000245 ORTHO05D000020 9.5e-09 63.9 113 38.9
PSO407G0240 Papaver somniferum HOM05D000245 ORTHO05D000020 1.2e-08 63.5 113 39.8
THA.LOC104802588 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 1.2e-08 63.5 117 39.3
Oeu054006.1 Olea europaea HOM05D000245 ORTHO05D000020 1.6e-08 63.2 113 35.4
Cc03_g01450 Coffea canephora HOM05D000245 ORTHO05D000020 2.1e-08 62.8 113 37.2
A01p37520 Brassica napus HOM05D000245 ORTHO05D000020 2.8e-08 62.4 118 35.6
BolC5t33712H Brassica oleracea HOM05D000245 ORTHO05D000020 2.8e-08 62.4 118 39.0
BraA01t03812Z Brassica rapa HOM05D000245 ORTHO05D000020 2.8e-08 62.4 118 35.6
Sed0003054 Sechium edule HOM05D000245 ORTHO05D000020 2.8e-08 62.4 113 32.7
A03p39940 Brassica napus HOM05D000245 ORTHO05D000020 3.6e-08 62.0 118 38.1
C05p49570 Brassica napus HOM05D000245 ORTHO05D000020 3.6e-08 62.0 117 37.6
COL.COLO4_13807 Corchorus olitorius HOM05D000245 ORTHO05D023715 3.6e-08 62.0 38 68.4
Lj4g0004601 Lotus japonicus HOM05D000245 ORTHO05D000020 3.6e-08 62.0 121 36.4
Thecc.01G305200 Theobroma cacao HOM05D000245 ORTHO05D000020 3.6e-08 62.0 113 38.1
TWI53G1721 Tripterygium wilfordii HOM05D000245 ORTHO05D000020 3.6e-08 62.0 113 38.1
AL3G29690 Arabidopsis lyrata HOM05D000245 ORTHO05D000020 4.7e-08 61.6 119 34.5
Carub.0003s1648 Capsella rubella HOM05D000245 ORTHO05D000020 4.7e-08 61.6 120 35.0
Sp3g15020 Schrenkiella parvula HOM05D000245 ORTHO05D000020 4.7e-08 61.6 118 34.7
C03p48440 Brassica napus HOM05D000245 ORTHO05D000020 6.1e-08 61.2 118 33.9
C05p53140 Brassica napus HOM05D000245 ORTHO05D000020 6.1e-08 61.2 143 36.4
BcaC05g28854 Brassica carinata HOM05D000245 ORTHO05D000020 8.0e-08 60.8 126 38.1
BcaC05g29101 Brassica carinata HOM05D000245 ORTHO05D000020 1.0e-07 60.5 145 35.9
SalBow2G0739 Salvia bowleyana HOM05D000245 ORTHO05D000020 1.0e-07 60.5 113 34.5
A05p35140 Brassica napus HOM05D000245 ORTHO05D000020 1.4e-07 60.1 142 35.9
SEGI_19085 Sequoiadendron giganteum HOM05D000245 ORTHO05D000020 1.4e-07 60.1 113 35.4
MSTRG.3886 Avicennia marina HOM05D000245 ORTHO05D000020 1.8e-07 59.7 116 33.6
A05p32860 Brassica napus HOM05D000245 ORTHO05D000020 1.8e-07 59.7 117 35.0
Sed0004832 Sechium edule HOM05D000245 ORTHO05D000020 1.8e-07 59.7 113 33.6
AT3G16770 Arabidopsis thaliana HOM05D000245 ORTHO05D000020 2.3e-07 59.3 119 36.1
Cpa.g.sc151.30 Carica papaya HOM05D000245 ORTHO05D000020 2.3e-07 59.3 113 38.1
ClCG05G006290 Citrullus lanatus HOM05D000245 ORTHO05D000020 2.3e-07 59.3 114 39.5
BcaC09g48393 Brassica carinata HOM05D000245 ORTHO05D000020 3.0e-07 58.9 136 35.3
CAN.G14.17 Capsicum annuum HOM05D000245 ORTHO05D000020 3.0e-07 58.9 114 36.8
Glyma.07G244867 Glycine max HOM05D000245 ORTHO05D000020 3.0e-07 58.9 115 39.1
AL1G62620 Arabidopsis lyrata HOM05D000245 ORTHO05D000020 4.0e-07 58.5 122 40.2
BcaC01g03805 Brassica carinata HOM05D000245 ORTHO05D000020 4.0e-07 58.5 118 35.6
BolC3t17122H Brassica oleracea HOM05D000245 ORTHO05D000020 4.0e-07 58.5 118 35.6
Thecc.01G305800 Theobroma cacao HOM05D000245 ORTHO05D000020 4.0e-07 58.5 113 38.9
BraA05t22108Z Brassica rapa HOM05D000245 ORTHO05D000020 5.2e-07 58.2 117 34.2
BraA05t22327Z Brassica rapa HOM05D000245 ORTHO05D000020 5.2e-07 58.2 148 34.5
CARHR092020 Cardamine hirsuta HOM05D000245 ORTHO05D000020 5.2e-07 58.2 118 33.9
A01p39460 Brassica napus HOM05D000245 ORTHO05D000020 6.8e-07 57.8 139 36.0
BolC5t33993H Brassica oleracea HOM05D000245 ORTHO05D000020 6.8e-07 57.8 152 34.2
BraA01t03987Z Brassica rapa HOM05D000245 ORTHO05D000020 6.8e-07 57.8 139 36.0
MELO3C006688.2 Cucumis melo HOM05D000245 ORTHO05D000020 6.8e-07 57.8 115 38.3
Ah.04g153710 Amaranthus hybridus HOM05D000245 ORTHO05D000020 1.2e-06 57.0 115 35.7
BcaB06g25771 Brassica carinata HOM05D000245 ORTHO05D000020 1.5e-06 56.6 118 33.9
Duzib133G0934 Durio zibethinus HOM05D000245 ORTHO05D000020 1.5e-06 56.6 117 35.9
Hund20519 Selenicereus undatus HOM05D000245 ORTHO05D023715 1.5e-06 56.6 30 76.7
BcaC01g01417 Brassica carinata HOM05D000245 ORTHO05D000020 2.0e-06 56.2 129 36.4
C01p50320 Brassica napus HOM05D000245 ORTHO05D000020 2.0e-06 56.2 135 34.8
C03p91800 Brassica napus HOM05D000245 ORTHO05D000020 2.0e-06 56.2 129 36.4
BolC3t21501H Brassica oleracea HOM05D000245 ORTHO05D000020 2.0e-06 56.2 129 36.4
Thhalv10011606m.g Eutrema salsugineum HOM05D000245 ORTHO05D000020 2.0e-06 56.2 140 33.6
TAR362G0701 Trochodendron aralioides HOM05D000245 ORTHO05D000020 2.0e-06 56.2 116 36.2
DCAR_023305 Daucus carota HOM05D000245 ORTHO05D000020 2.6e-06 55.8 116 35.3
Sp3g12520 Schrenkiella parvula HOM05D000245 ORTHO05D000020 2.6e-06 55.8 140 33.6
A08p01380 Brassica napus HOM05D000245 ORTHO05D000020 3.4e-06 55.5 129 34.9
BraA08t32189Z Brassica rapa HOM05D000245 ORTHO05D000020 3.4e-06 55.5 129 34.9
FAN20G2087 Fragaria x ananassa HOM05D000245 ORTHO05D000020 3.4e-06 55.5 113 34.5
Gorai.004G142800 Gossypium raimondii HOM05D000245 ORTHO05D000020 3.4e-06 55.5 113 34.5
Dinv33076 Davidia involucrata HOM05D000245 ORTHO05D000020 4.4e-06 55.1 113 34.5
FAN27G1186 Fragaria x ananassa HOM05D000245 ORTHO05D000020 4.4e-06 55.1 113 34.5
AT1G53910 Arabidopsis thaliana HOM05D000245 ORTHO05D000020 7.5e-06 54.3 141 34.8
Duzib138G0004 Durio zibethinus HOM05D000245 ORTHO05D000020 7.5e-06 54.3 113 34.5
Glyma.10G016500 Glycine max HOM05D000245 ORTHO05D000020 7.5e-06 54.3 113 31.9
Thhalv10021421m.g Eutrema salsugineum HOM05D000245 ORTHO05D000020 9.8e-06 53.9 118 33.1
Glyma.02G016100 Glycine max HOM05D000245 ORTHO05D000020 9.8e-06 53.9 115 32.2


User provided reference genes

Program Settings