Gene: AT1G53910

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G53910
  • Transcript Identifier AT1G53910.1
  • Gene Type Coding gene
  • Location Chr1 : 20135242-20136581 : positive

Gene Family Information

  • ID HOM05D000245
  • #Genes/#Species 1725/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G53910.1
  • symbol RAP2.12
  • uniprot Q9SSA8

Descriptions

  • Description related to AP2 12
  • Computational description related to AP2 12 (RAP2.12); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 2 (TAIR:AT3G14230.3); Has 6179 Blast hits to 5848 proteins in 260 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 6129; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009414
ISO
PLAZA Integrative Orthologyresponse to water deprivation Solyc06g063070.3
GO:0010104
ISO
PLAZA Integrative Orthologyregulation of ethylene-activated signaling pathway Solyc06g063070.3
GO:0009873
IEA
Gene Ontologyethylene-activated signaling pathway
GO:0009873
IEA
InterProethylene-activated signaling pathway
GO:0006355
IEA
Gene Ontologyregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:2000280
IMP
Gene Ontologyregulation of root development1
GO:0070483
IEP
Gene Ontologydetection of hypoxia2
GO:0001666
IMP
Gene Ontologyresponse to hypoxia2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
TAS
Gene OntologyDNA binding3
GO:0003677
IEA
InterProDNA binding
GO:0003700
ISS
TAS, IEA
Gene OntologyDNA-binding transcription factor activity3 4
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0000976
IPI
Gene Ontologytranscription cis-regulatory region binding5
GO:0005515
IPI
Gene Ontologyprotein binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
GOA Databasemembrane
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
IC
Gene Ontologynucleus2 3
GO:0005886
IEA
GOA Databaseplasma membrane
GO:0005886
IDA
Gene Ontologyplasma membrane2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036955 AP2/ERF domain superfamily
IPR001471 AP2/ERF domain
IPR044808 Ethylene-responsive transcription factor
IPR016177 DNA-binding domain superfamily
Mapman id Description
15.5.7.1 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (ERF)