Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 1.6e-179 632.9 372 100.0
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 9.7e-145 517.3 392 83.4
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 3.5e-70 269.6 329 52.6
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 1.7e-69 267.3 303 53.8
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 7.3e-68 261.9 346 46.5
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 1.6e-67 260.8 272 54.4
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 5.8e-65 252.3 310 48.4
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 7.9e-62 241.9 377 46.2
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 8.7e-61 238.4 293 54.6
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 1.3e-59 234.6 315 44.8
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 4.9e-56 222.6 314 50.6
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 1.9e-55 220.7 343 45.5
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 7.9e-54 215.3 294 49.7
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 7.9e-54 215.3 317 43.8
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 7.9e-54 215.3 322 46.6
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 1.8e-53 214.2 313 49.8
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 2.3e-53 213.8 300 44.3
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 5.1e-53 212.6 275 42.2
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 8.7e-53 211.8 321 45.5
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 1.1e-52 211.5 319 49.5
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 4.3e-52 209.5 295 45.8
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 1.3e-51 208.0 297 45.5
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 1.3e-51 208.0 306 50.0
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 1.8e-50 204.1 287 40.1
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 6.9e-50 202.2 286 49.0
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 9.0e-50 201.8 284 41.5
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 9.0e-50 201.8 284 41.5
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 9.0e-50 201.8 269 40.9
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.2e-49 201.4 287 41.1
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 2.0e-49 200.7 270 44.4
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 3.4e-49 199.9 307 46.9
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 4.5e-49 199.5 276 48.9
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 5.8e-49 199.1 316 43.7
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 7.6e-49 198.7 276 47.5
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 1.0e-48 198.4 284 41.2
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.7e-48 197.6 284 45.8
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 3.8e-48 196.4 345 39.7
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 3.8e-48 196.4 344 43.3
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 8.4e-48 195.3 308 45.5
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 1.4e-47 194.5 337 43.6
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 7.1e-47 192.2 280 48.9
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 1.6e-46 191.0 315 44.1
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 1.6e-46 191.0 375 36.8
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 2.1e-46 190.7 316 45.3
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 2.1e-46 190.7 315 44.4
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 4.6e-46 189.5 302 39.4
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 4.6e-46 189.5 293 47.8
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 3.9e-45 186.4 126 67.5
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 3.9e-45 186.4 314 44.9
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 6.7e-45 185.7 309 44.0
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 8.7e-45 185.3 312 43.9
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 9.7e-44 181.8 134 64.9
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 9.7e-44 181.8 328 42.1
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 1.3e-43 181.4 340 41.5
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 1.6e-43 181.0 293 43.0
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 8.2e-43 178.7 290 42.8
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 2.4e-42 177.2 283 42.8
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 2.4e-42 177.2 284 38.7
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 5.0e-40 169.5 268 38.4
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 5.0e-40 169.5 343 41.4
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 1.1e-39 168.3 126 63.5
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 1.4e-39 167.9 314 39.5
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 2.5e-39 167.2 320 41.2
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 2.5e-39 167.2 136 58.8
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 3.2e-39 166.8 108 68.5
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 3.6e-38 163.3 316 39.6
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 7.9e-38 162.2 283 40.6
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 1.0e-37 161.8 312 38.1
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 1.3e-37 161.4 317 39.1
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 1.8e-37 161.0 302 41.1
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 2.3e-37 160.6 283 39.9
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 5.1e-37 159.5 284 36.3
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 6.7e-37 159.1 290 41.0
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 6.7e-37 159.1 124 59.7
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 3.3e-36 156.8 289 39.8
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 1.3e-35 154.8 324 41.4
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 2.8e-35 153.7 299 35.1
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 3.7e-35 153.3 255 45.9
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 4.8e-35 152.9 117 57.3
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.4e-34 151.4 108 63.0
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 1.8e-34 151.0 248 36.7
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 1.5e-33 147.9 109 61.5
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 5.9e-33 146.0 260 38.1
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 7.7e-33 145.6 332 38.9
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 1.3e-32 144.8 111 59.5
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 2.2e-32 144.1 254 34.3
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 1.4e-31 141.4 188 47.9
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 1.9e-31 141.0 150 44.7
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 3.2e-31 140.2 120 55.0
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 3.2e-31 140.2 116 53.4
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 4.2e-31 139.8 258 35.3
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 2.3e-29 134.0 297 30.6
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 1.5e-28 131.3 341 28.4
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 6.3e-27 125.9 276 35.1
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 4.1e-26 123.2 153 41.8
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 5.3e-26 122.9 93 61.3
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 5.3e-26 122.9 125 49.6
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 5.5e-23 112.8 254 35.4
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 7.2e-23 112.5 144 41.7
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 1.6e-22 111.3 81 55.6
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 4.7e-22 109.8 81 55.6
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 1.8e-21 107.8 339 30.4
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 4.4e-20 103.2 95 46.3
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 9.7e-20 102.1 92 57.6
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 2.8e-19 100.5 142 38.7
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 6.3e-19 99.4 86 48.8
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 2.4e-18 97.4 79 57.0
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 3.1e-18 97.1 81 46.9
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 4.5e-17 93.2 104 45.2
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 7.7e-17 92.4 259 25.1
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 8.5e-16 89.0 81 43.2
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 1.6e-14 84.7 266 26.7
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 2.7e-14 84.0 87 44.8
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 1.0e-13 82.0 77 45.5
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 2.3e-13 80.9 64 50.0
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 4.0e-13 80.1 75 49.3
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 4.0e-13 80.1 81 37.0
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 5.2e-13 79.7 69 47.8
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 2.6e-12 77.4 232 35.3
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.6e-12 77.4 102 37.3
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.6e-12 77.4 102 37.3
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 3.3e-12 77.0 63 49.2
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.7e-11 73.6 65 44.6
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 1.4e-10 71.6 54 68.5
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 4.1e-10 70.1 63 50.8
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.0e-09 67.8 40 60.0
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 1.0e-08 65.5 42 71.4
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.0e-08 65.5 115 27.8
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 2.9e-08 63.9 56 57.1
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 2.9e-08 63.9 50 68.0
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 3.8e-08 63.5 227 28.6
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 8.5e-08 62.4 233 24.0
Glyma.07G162100 Glycine max HOM05D003568 ORTHO05D004104 4.2e-07 60.1 45 68.9
Lj3C988T4 Lonicera japonica HOM05D004644 ORTHO05D005700 5.5e-07 59.7 54 51.9
Glyma.19G185100 Glycine max HOM05D004644 ORTHO05D005700 9.4e-07 58.9 42 59.5
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 1.2e-06 58.5 69 50.7
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 8.0e-06 55.8 71 46.5


User provided reference genes

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