Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 1.5e-270 935.6 503 100.0
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 9.4e-268 926.4 503 97.2
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 3.7e-208 728.4 501 76.0
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 6.4e-208 727.6 500 77.6
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 3.9e-205 718.4 494 77.9
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 5.2e-202 708.0 515 72.8
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 2.6e-201 705.7 501 74.1
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 4.1e-199 698.4 503 73.8
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 9.2e-199 697.2 515 70.3
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 1.2e-198 696.8 505 73.9
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 1.2e-198 696.8 501 72.1
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 2.1e-198 696.0 517 70.6
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 1.0e-197 693.7 515 70.3
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 1.3e-197 693.3 504 76.0
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 2.3e-197 692.6 504 75.2
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 3.0e-197 692.2 526 72.1
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 1.1e-196 690.3 498 74.3
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 1.6e-195 686.4 443 79.5
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 1.2e-193 680.2 503 70.6
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 1.2e-193 680.2 517 69.4
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 4.4e-193 678.3 445 77.8
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 7.6e-193 677.6 447 76.5
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 3.8e-192 675.2 492 72.8
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 6.4e-192 674.5 509 70.5
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 1.2e-190 670.2 442 77.8
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 2.1e-190 669.5 505 70.1
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 3.0e-189 665.6 508 70.1
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 1.5e-188 663.3 457 75.3
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 4.3e-188 661.8 475 73.5
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 5.3e-186 654.8 450 74.2
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 6.9e-186 654.4 506 69.0
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 1.7e-184 649.8 552 64.3
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 1.1e-183 647.1 448 73.4
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 1.4e-183 646.7 443 75.6
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 2.7e-182 642.5 518 68.3
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 6.0e-182 641.3 508 67.7
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 7.9e-182 641.0 507 67.3
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 3.0e-181 639.0 506 67.2
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 1.1e-180 637.1 399 83.2
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 7.4e-180 634.4 507 66.9
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 8.1e-179 630.9 507 66.1
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 1.8e-178 629.8 445 72.4
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 1.8e-178 629.8 442 71.7
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 4.0e-178 628.6 440 74.3
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 5.3e-178 628.2 447 72.5
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 6.9e-178 627.9 504 66.9
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 1.2e-177 627.1 447 72.0
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 2.2e-176 622.9 441 72.6
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 3.8e-176 622.1 506 64.6
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 3.5e-174 615.5 477 68.3
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 3.5e-174 615.5 471 69.6
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 7.9e-174 614.4 439 71.8
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 1.0e-173 614.0 477 68.3
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.0e-173 614.0 477 68.1
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.8e-173 613.2 477 67.9
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 1.8e-173 613.2 478 69.2
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 3.0e-173 612.5 442 71.9
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 5.1e-173 611.7 413 75.5
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 6.7e-173 611.3 505 64.8
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 8.7e-173 610.9 435 70.1
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 1.1e-172 610.5 446 70.4
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 1.3e-171 607.1 455 70.8
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 1.6e-171 606.7 440 70.9
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 3.7e-171 605.5 439 70.4
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 6.2e-171 604.7 439 70.2
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 6.2e-171 604.7 439 70.2
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 8.2e-171 604.4 510 63.9
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 1.4e-170 603.6 442 69.5
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 2.4e-170 602.8 438 71.0
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 1.2e-169 600.5 442 70.6
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 1.2e-169 600.5 439 70.6
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 3.4e-169 599.0 501 65.5
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 2.5e-167 592.8 448 70.1
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 1.2e-166 590.5 509 65.0
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 3.9e-165 585.5 414 71.3
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 5.1e-165 585.1 375 79.2
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 6.7e-165 584.7 421 71.0
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 1.1e-164 583.9 446 69.1
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 3.3e-164 582.4 459 67.8
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 2.8e-163 579.3 458 64.6
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 2.6e-161 572.8 503 63.0
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 4.5e-161 572.0 556 59.4
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 1.4e-159 567.0 414 68.8
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 6.7e-157 558.1 439 66.5
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 8.7e-157 557.8 439 66.5
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 1.5e-153 547.0 417 68.3
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 8.5e-152 541.2 430 64.2
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 4.2e-151 538.9 414 68.8
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 1.2e-150 537.3 346 75.4
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 2.0e-148 530.0 386 71.5
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 4.4e-148 528.9 442 66.1
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 1.1e-146 524.2 405 68.6
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 5.3e-146 521.9 374 73.8
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 1.9e-143 513.5 400 64.2
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 4.5e-137 492.3 456 56.8
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 3.6e-134 482.6 407 62.4
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 2.2e-131 473.4 414 60.9
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 2.8e-131 473.0 425 60.2
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 2.4e-130 469.9 344 66.3
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 3.8e-128 462.6 307 73.6
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 3.7e-123 446.0 364 63.5
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 4.4e-116 422.5 338 63.9
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 1.1e-114 417.9 357 61.6
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 8.9e-109 398.3 463 49.2
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 1.5e-108 397.5 403 55.3
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 2.0e-108 397.1 451 49.4
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 1.3e-107 394.4 399 53.9
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 1.1e-106 391.3 271 72.7
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 8.6e-104 381.7 404 53.0
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 2.8e-102 376.7 379 51.7
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 5.4e-98 362.5 359 58.8
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.3e-96 357.8 238 73.5
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 1.5e-84 317.8 343 51.3
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 9.2e-82 308.5 335 54.3
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 2.3e-72 277.3 361 44.6
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 3.6e-70 270.0 217 64.1
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 5.8e-68 262.7 492 35.8
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 6.2e-62 242.7 284 49.3
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 1.6e-57 228.0 484 32.6
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 9.1e-37 159.1 128 68.8
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 9.1e-37 159.1 192 50.0
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 1.2e-33 148.7 119 66.4
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 1.5e-31 141.7 129 61.2
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.2e-28 132.1 222 37.8
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 9.7e-23 112.5 64 75.0
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 2.4e-21 107.8 127 55.1
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.3e-19 102.1 201 37.8
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 2.3e-16 91.3 67 62.7
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 5.2e-16 90.1 89 53.9
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 6.7e-16 89.7 95 48.4
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 1.2e-15 89.0 100 55.0
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 2.2e-11 74.7 62 58.1
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 3.2e-10 70.9 100 43.0
Rhsim10G0039300 Rhododendron simsii HOM05D005856 ORTHO05D007264 1.8e-08 65.1 69 55.1
Psat5g095160 Pisum sativum HOM05D001167 ORTHO05D036681 2.3e-08 64.7 76 59.2


User provided reference genes

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