Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 0.0e+00 1171.8 596 100.0
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 0.0e+00 1143.6 582 99.8
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 2.5e-288 995.0 601 84.5
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 6.9e-286 986.9 601 84.2
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 1.2e-285 986.1 601 83.0
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 2.0e-285 985.3 601 82.9
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 1.0e-284 983.0 601 83.0
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 1.7e-284 982.2 601 83.4
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 3.8e-284 981.1 601 83.7
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 5.0e-284 980.7 601 83.4
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 4.3e-280 967.6 592 83.1
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 2.9e-268 928.3 599 79.3
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 5.0e-268 927.5 562 83.6
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 1.2e-266 922.9 596 78.4
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 2.3e-265 918.7 587 79.9
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 8.8e-265 916.8 599 78.0
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 5.7e-264 914.1 623 75.9
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 9.7e-264 913.3 599 77.1
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 4.8e-263 911.0 587 78.5
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 6.3e-263 910.6 591 76.8
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 1.4e-262 909.4 590 76.6
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 1.4e-262 909.4 597 77.2
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 7.0e-262 907.1 599 76.6
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 1.2e-261 906.4 599 77.0
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 2.6e-261 905.2 598 77.3
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.6e-258 896.0 599 76.0
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 2.3e-257 892.1 613 74.4
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 4.0e-257 891.3 602 75.9
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 6.7e-257 890.6 600 76.3
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.2e-256 889.8 599 74.6
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.5e-256 889.4 605 75.2
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 4.4e-256 887.9 600 75.8
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 7.5e-256 887.1 597 75.7
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 1.7e-255 885.9 600 75.2
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.7e-255 885.9 599 75.0
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 2.2e-255 885.6 596 75.3
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 8.2e-255 883.6 592 75.3
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 1.1e-254 883.2 599 75.8
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 1.8e-254 882.5 599 76.1
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 2.4e-254 882.1 599 75.5
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 4.1e-254 881.3 589 75.2
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 7.0e-254 880.6 598 74.2
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.2e-253 879.8 600 75.3
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.2e-253 879.8 600 75.3
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 2.0e-253 879.0 592 74.8
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 3.5e-253 878.2 593 74.9
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 4.5e-253 877.9 599 73.5
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 1.0e-252 876.7 566 78.6
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 1.3e-252 876.3 592 75.0
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 2.9e-252 875.2 592 74.8
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 5.0e-252 874.4 600 73.8
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 6.5e-252 874.0 594 74.6
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 1.9e-251 872.5 597 74.2
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 2.5e-251 872.1 594 73.6
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 4.2e-251 871.3 600 74.2
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 9.4e-251 870.2 601 74.0
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 1.2e-250 869.8 598 74.1
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 2.1e-250 869.0 600 73.7
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 2.1e-250 869.0 595 73.4
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 4.7e-250 867.8 598 74.2
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 6.1e-250 867.5 601 73.9
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 6.1e-250 867.5 594 74.4
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.4e-249 866.3 612 73.2
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 3.0e-249 865.1 598 73.9
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 4.0e-249 864.8 593 74.5
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 4.0e-249 864.8 597 73.2
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 5.2e-249 864.4 599 74.0
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 6.8e-249 864.0 598 74.1
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 1.2e-248 863.2 609 72.9
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 1.2e-248 863.2 593 74.7
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 1.2e-248 863.2 598 73.7
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 2.0e-248 862.4 597 72.4
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 2.0e-248 862.4 598 74.1
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 3.4e-248 861.7 647 68.5
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 3.7e-247 858.2 597 72.4
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 3.7e-247 858.2 597 72.4
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 3.7e-247 858.2 597 72.4
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 3.7e-247 858.2 591 73.6
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 4.8e-247 857.8 597 72.4
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 6.3e-247 857.4 599 73.5
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 1.1e-246 856.7 597 72.7
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 1.1e-246 856.7 597 72.2
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 1.2e-245 853.2 591 74.1
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 2.0e-245 852.4 592 72.6
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 2.7e-245 852.0 600 72.8
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 2.7e-245 852.0 591 72.8
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 2.9e-244 848.6 610 71.5
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 8.6e-244 847.0 591 72.9
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 3.3e-243 845.1 656 67.2
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 9.5e-243 843.6 596 72.1
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 8.9e-241 837.0 560 76.6
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.6e-240 835.5 599 72.6
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 5.7e-240 834.3 592 71.3
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 8.3e-239 830.5 621 69.2
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 1.1e-238 830.1 680 64.7
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 5.9e-237 824.3 599 69.1
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 2.3e-236 822.4 597 71.0
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 2.8e-234 815.5 597 70.4
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.3e-233 812.4 564 73.9
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 1.5e-232 809.7 550 74.9
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 4.4e-232 808.1 546 74.9
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 7.0e-230 800.8 597 70.2
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 1.5e-227 793.1 592 70.3
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.9e-227 792.7 585 70.4
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 5.6e-227 791.2 585 70.3
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 4.7e-226 788.1 602 69.3
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 3.6e-218 761.9 474 80.8
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.8e-217 759.6 471 79.4
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 4.9e-215 751.5 597 66.8
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 2.3e-212 742.7 654 59.9
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 4.3e-211 738.4 636 62.4
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 7.3e-211 737.6 591 63.1
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 9.2e-206 720.7 597 63.5
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 2.3e-204 716.1 594 62.6
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 8.7e-204 714.1 501 72.5
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 6.2e-202 708.0 491 73.5
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 2.5e-195 686.0 427 78.7
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 6.4e-191 671.4 542 66.2
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.6e-170 603.6 581 54.9
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 2.4e-169 599.7 501 63.7
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 9.0e-169 597.8 439 70.4
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 3.9e-164 582.4 567 54.0
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 5.7e-163 578.6 591 51.6
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 5.9e-152 542.0 338 82.8
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 2.6e-144 516.5 429 61.5
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 4.8e-138 495.7 605 46.4
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 8.8e-132 474.9 570 45.6
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 4.4e-131 472.6 363 68.3
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 2.0e-128 463.8 288 81.2
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 1.3e-127 461.1 400 60.2
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.1e-125 453.8 530 50.8
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 5.2e-116 422.5 248 83.1
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 6.8e-108 395.6 311 66.6
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 3.9e-103 379.8 288 67.4
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 2.9e-98 363.6 440 48.6
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 3.1e-84 317.0 278 59.4
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 2.8e-77 293.9 314 52.5
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 8.4e-74 282.3 181 79.6
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 1.8e-71 274.6 677 30.4
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 7.4e-70 269.2 470 37.7
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 1.5e-67 261.5 153 83.0
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 3.1e-60 237.3 155 78.1
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 4.5e-59 233.4 149 79.9
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.1e-44 185.7 102 87.3
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.1e-44 184.1 107 84.1
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 3.8e-42 177.2 614 27.7
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 6.1e-32 143.3 96 71.9
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.8e-31 141.7 120 57.5
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 7.2e-25 119.8 164 40.2
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.3e-21 109.0 66 77.3
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 1.3e-18 99.0 79 57.0
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 6.5e-18 96.7 94 59.6
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 5.2e-15 87.0 481 23.7
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.2e-14 85.9 93 49.5
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 1.5e-14 85.5 49 81.6
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 7.5e-14 83.2 48 81.2
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 2.8e-13 81.3 72 50.0
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.4e-12 79.0 53 77.4
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 3.1e-12 77.8 53 77.4
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 4.1e-12 77.4 57 66.7
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 5.4e-12 77.0 61 68.9
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 2.0e-11 75.1 58 55.2
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 4.5e-11 73.9 93 47.3
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 2.3e-10 71.6 207 28.5
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 8.0e-08 63.2 54 63.0
Os08g0323266 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D026010 6.8e-07 60.1 47 61.7


User provided reference genes

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