Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.I96U63 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.1e-184 649.8 328 100.0
arahy.Tifrunner.gnm1.ann1.SVJ78B Arachis hypogaea HOM05D004494 ORTHO05D083263 3.8e-20 103.2 48 93.8
arahy.Tifrunner.gnm1.ann1.UPEY1W Arachis hypogaea HOM05D004494 ORTHO05D005493 5.0e-20 102.8 53 88.7
arahy.Tifrunner.gnm1.ann1.H77AQF Arachis hypogaea HOM05D004494 ORTHO05D005493 1.1e-19 101.7 59 81.4
arahy.Tifrunner.gnm1.ann1.YVY1FB Arachis hypogaea HOM05D004494 ORTHO05D005493 9.5e-19 98.6 48 91.7
arahy.Tifrunner.gnm1.ann1.6Y6XEU Arachis hypogaea HOM05D004494 ORTHO05D085158 1.2e-18 98.2 103 65.0
arahy.Tifrunner.gnm1.ann1.IHMM71 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.8e-18 97.1 44 97.7
arahy.Tifrunner.gnm1.ann1.QX7YV8 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.8e-18 97.1 44 97.7
CiPaw.16G074500 Carya illinoinensis HOM05D004494 ORTHO05D005493 3.6e-18 96.7 45 95.6
Ciclev10017429m.g Citrus clementina HOM05D004494 ORTHO05D005493 3.6e-18 96.7 45 95.6
Glyma.09G164200 Glycine max HOM05D004494 ORTHO05D005493 3.6e-18 96.7 45 95.6
Glyma.16G212700 Glycine max HOM05D004494 ORTHO05D005493 3.6e-18 96.7 45 95.6
Lj2g0023891 Lotus japonicus HOM05D004494 ORTHO05D005493 3.6e-18 96.7 45 95.6
Lalb_Chr08g0237121 Lupinus albus HOM05D004494 ORTHO05D005493 3.6e-18 96.7 45 95.6
Manes.10G081901 Manihot esculenta HOM05D004494 ORTHO05D005493 3.6e-18 96.7 45 95.6
Phvul.004G138700 Phaseolus vulgaris HOM05D004494 ORTHO05D005493 3.6e-18 96.7 45 95.6
Potri.011G144800 Populus trichocarpa HOM05D004494 ORTHO05D005493 3.6e-18 96.7 45 95.6
Sed0027035 Sechium edule HOM05D004494 ORTHO05D005493 4.7e-18 96.3 45 93.3
GSVIVG01012569001 Vitis vinifera HOM05D004494 ORTHO05D005493 4.7e-18 96.3 79 60.8
ClCG01G014780 Citrullus lanatus HOM05D004494 ORTHO05D005493 8.0e-18 95.5 70 67.1
Lj2g0005437 Lotus japonicus HOM05D004494 ORTHO05D005493 8.0e-18 95.5 45 93.3
Nn4g25134 Nelumbo nucifera HOM05D004494 ORTHO05D005493 8.0e-18 95.5 49 87.8
PSO673G0024 Papaver somniferum HOM05D004494 ORTHO05D005493 8.0e-18 95.5 45 93.3
Sed0010347 Sechium edule HOM05D004494 ORTHO05D005493 8.0e-18 95.5 45 93.3
Ah.06g192750 Amaranthus hybridus HOM05D006004 ORTHO05D006976 1.4e-17 94.7 46 91.3
EL10Ac5g11725 Beta vulgaris HOM05D004494 ORTHO05D005493 1.4e-17 94.7 45 93.3
CSS0001708 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 1.4e-17 94.7 45 93.3
CSS0021691 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 1.4e-17 94.7 45 93.3
CSS0025595 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 1.4e-17 94.7 45 93.3
CSS0034931 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 1.4e-17 94.7 45 93.3
Hma1.2p1_0854F.1_g228840 Hydrangea macrophylla HOM05D004494 ORTHO05D005493 1.4e-17 94.7 45 93.3
GSVIVG01035228001 Vitis vinifera HOM05D004494 ORTHO05D005493 1.4e-17 94.7 45 93.3
AUR62038701 Chenopodium quinoa HOM05D004494 ORTHO05D005493 1.8e-17 94.4 46 91.3
Lsat_1_v5_gn_9_103341 Lactuca sativa HOM05D000133 ORTHO05D005913 1.8e-17 94.4 54 77.8
PGR083G0484 Punica granatum HOM05D004494 ORTHO05D005493 2.3e-17 94.0 45 91.1
arahy.Tifrunner.gnm1.ann1.93HXT6 Arachis hypogaea HOM05D004494 ORTHO05D005493 3.0e-17 93.6 44 93.2
arahy.Tifrunner.gnm1.ann1.WE4FU2 Arachis hypogaea HOM05D004494 ORTHO05D005493 3.0e-17 93.6 77 61.0
MELO3C002173.2 Cucumis melo HOM05D004494 ORTHO05D005493 3.0e-17 93.6 45 93.3
MELO3C008157.2 Cucumis melo HOM05D004494 ORTHO05D005493 3.0e-17 93.6 45 93.3
CsaV3_1G007550 Cucumis sativus L. HOM05D004494 ORTHO05D005493 3.0e-17 93.6 45 93.3
Oeu058437.1 Olea europaea HOM05D004494 ORTHO05D005493 3.0e-17 93.6 66 66.7
Oeu012705.2 Olea europaea HOM05D004494 ORTHO05D005493 4.0e-17 93.2 44 93.2
Hund02298 Selenicereus undatus HOM05D004494 ORTHO05D005493 4.0e-17 93.2 44 93.2
Hund10311 Selenicereus undatus HOM05D004494 ORTHO05D005493 4.0e-17 93.2 44 93.2
Nitab4.5_0002209g0130 Nicotiana tabacum HOM05D004494 ORTHO05D005493 5.2e-17 92.8 52 84.6
vmacro09451 Vaccinium macrocarpon HOM05D004494 ORTHO05D005493 6.8e-17 92.4 45 91.1
arahy.Tifrunner.gnm1.ann1.S5KS5D Arachis hypogaea HOM05D004494 ORTHO05D005493 8.9e-17 92.0 74 64.9
BcaC05g27278 Brassica carinata HOM05D004494 ORTHO05D005493 8.9e-17 92.0 62 69.4
Cpa.g.sc25.208 Carica papaya HOM05D004494 ORTHO05D005493 8.9e-17 92.0 63 69.8
PSO782G1294 Papaver somniferum HOM05D004494 ORTHO05D005493 8.9e-17 92.0 45 88.9
SalBow1G8446 Salvia bowleyana HOM05D004494 ORTHO05D005493 8.9e-17 92.0 44 90.9
SalBow3G4220 Salvia bowleyana HOM05D004494 ORTHO05D005493 8.9e-17 92.0 44 90.9
SalBow6G4049 Salvia bowleyana HOM05D004494 ORTHO05D005493 8.9e-17 92.0 44 90.9
Haze_25494 Corylus avellana HOM05D004494 ORTHO05D005493 1.2e-16 91.7 46 87.0
Migut.H02056 Erythranthe guttata HOM05D004494 ORTHO05D005493 1.2e-16 91.7 45 91.1
TPR.G34872 Trifolium pratense HOM05D004494 ORTHO05D005493 1.2e-16 91.7 45 88.9
COL.COLO4_31155 Corchorus olitorius HOM05D004494 ORTHO05D005493 1.5e-16 91.3 55 74.5
TWI36G0745 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 1.5e-16 91.3 45 91.1
Aqoxy5G00339 Aquilegia oxysepala HOM05D004494 ORTHO05D005493 2.6e-16 90.5 45 91.1
Oeu059243.2 Olea europaea HOM05D004494 ORTHO05D005493 2.6e-16 90.5 65 69.2
THA.LOC104822608 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 2.6e-16 90.5 45 88.9
CANSAT11G2181 Cannabis sativa HOM05D004494 ORTHO05D005493 3.4e-16 90.1 43 93.0
Duzib192G0124 Durio zibethinus HOM05D004494 ORTHO05D005493 3.4e-16 90.1 45 88.9
Duzib235G0349 Durio zibethinus HOM05D004494 ORTHO05D005493 3.4e-16 90.1 45 88.9
Migut.M00671 Erythranthe guttata HOM05D004494 ORTHO05D005493 3.4e-16 90.1 44 90.9
Gohir.A06G195100 Gossypium hirsutum HOM05D004494 ORTHO05D005493 3.4e-16 90.1 45 88.9
Gohir.D06G202700 Gossypium hirsutum HOM05D004494 ORTHO05D005493 3.4e-16 90.1 45 88.9
Gohir.D11G001400 Gossypium hirsutum HOM05D004494 ORTHO05D005493 3.4e-16 90.1 45 88.9
Gorai.007G002300 Gossypium raimondii HOM05D004494 ORTHO05D005493 3.4e-16 90.1 45 88.9
Gorai.010G236600 Gossypium raimondii HOM05D004494 ORTHO05D005493 3.4e-16 90.1 45 88.9
Thecc.06G057100 Theobroma cacao HOM05D004494 ORTHO05D005493 3.4e-16 90.1 45 88.9
Thhalv10011934m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 4.4e-16 89.7 45 84.4
PSO421G0336 Papaver somniferum HOM05D004494 ORTHO05D005493 4.4e-16 89.7 46 91.3
PSO421G0392 Papaver somniferum HOM05D004494 ORTHO05D005493 4.4e-16 89.7 46 91.3
CiPaw.06G022300 Carya illinoinensis HOM05D004494 ORTHO05D005493 5.7e-16 89.4 45 91.1
HanXRQChr15g0468731 Helianthus annuus HOM05D004494 ORTHO05D005493 5.7e-16 89.4 48 83.3
THA.LOC104810404 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 5.7e-16 89.4 45 88.9
DCAR_021072 Daucus carota HOM05D004494 ORTHO05D005493 7.5e-16 89.0 44 88.6
Os01g0530366 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 7.5e-16 89.0 46 89.1
TWI81G0978 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 7.5e-16 89.0 45 88.9
QL10p045758 Quercus lobata HOM05D004494 ORTHO05D005493 9.8e-16 88.6 44 88.6
QL10p046170 Quercus lobata HOM05D004494 ORTHO05D005493 9.8e-16 88.6 44 88.6
Gohir.A11G001800 Gossypium hirsutum HOM05D004494 ORTHO05D005493 1.3e-15 88.2 45 86.7
Psat3g135240 Pisum sativum HOM05D004494 ORTHO05D005493 1.3e-15 88.2 45 84.4
Aa31LG10G1570 Aethionema arabicum HOM05D004494 ORTHO05D005493 1.7e-15 87.8 44 84.1
Ca_07598_v3 Cicer arietinum L. HOM05D004494 ORTHO05D005493 1.7e-15 87.8 45 82.2
HanXRQChr09g0257491 Helianthus annuus HOM05D004494 ORTHO05D005493 1.7e-15 87.8 45 86.7
AT5G41010 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 2.2e-15 87.4 45 82.2
arahy.Tifrunner.gnm1.ann1.DLM5V3 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.2e-15 87.4 45 84.4
CAN.G904.11 Capsicum annuum HOM05D004494 ORTHO05D005493 2.2e-15 87.4 46 89.1
MBI06_g27491_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 2.2e-15 87.4 44 88.6
Medtr7g066240 Medicago truncatula HOM05D004494 ORTHO05D005493 2.2e-15 87.4 45 84.4
PSO063G6745 Papaver somniferum HOM05D004494 ORTHO05D005493 2.2e-15 87.4 40 95.0
Solyc10g007650.3 Solanum lycopersicum HOM05D004494 ORTHO05D005493 2.2e-15 87.4 46 89.1
BolC3t21490H Brassica oleracea HOM05D004494 ORTHO05D005493 2.9e-15 87.0 47 78.7
Thhalv10028022m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 2.9e-15 87.0 45 82.2
AL7G48542 Arabidopsis lyrata HOM05D004494 ORTHO05D005493 3.7e-15 86.7 46 82.6
BcaB04g17064 Brassica carinata HOM05D004494 ORTHO05D005493 3.7e-15 86.7 45 82.2
BcaB07g33308 Brassica carinata HOM05D004494 ORTHO05D005493 3.7e-15 86.7 45 82.2
BcaC01g01406 Brassica carinata HOM05D004494 ORTHO05D005493 3.7e-15 86.7 45 82.2
BcaC08g43550 Brassica carinata HOM05D004494 ORTHO05D005493 3.7e-15 86.7 45 82.2
A06p00840 Brassica napus HOM05D004494 ORTHO05D005493 3.7e-15 86.7 45 82.2
C06p09480 Brassica napus HOM05D004494 ORTHO05D005493 3.7e-15 86.7 45 82.2
BraA08t32198Z Brassica rapa HOM05D004494 ORTHO05D005493 3.7e-15 86.7 45 82.2
BraSC277t45950Z Brassica rapa HOM05D004494 ORTHO05D005493 3.7e-15 86.7 45 82.2
Sp1g40220 Schrenkiella parvula HOM05D004494 ORTHO05D005493 3.7e-15 86.7 45 82.2
Sp7g00900 Schrenkiella parvula HOM05D004494 ORTHO05D005493 3.7e-15 86.7 45 82.2
CARHR043990 Cardamine hirsuta HOM05D004494 ORTHO05D005493 4.9e-15 86.3 45 82.2
CARHR213360 Cardamine hirsuta HOM05D004494 ORTHO05D005493 4.9e-15 86.3 45 82.2
Prupe.4G246000 Prunus persica HOM05D004494 ORTHO05D005493 4.9e-15 86.3 45 86.7
Prupe.5G244400 Prunus persica HOM05D004494 ORTHO05D005493 4.9e-15 86.3 45 86.7
Carub.0007s3448 Capsella rubella HOM05D004494 ORTHO05D005493 6.4e-15 85.9 43 83.7
FvH4_5g18480 Fragaria vesca HOM05D004494 ORTHO05D005493 6.4e-15 85.9 94 57.4
Nitab4.5_0000923g0150 Nicotiana tabacum HOM05D004494 ORTHO05D005493 6.4e-15 85.9 45 88.9
PGSC0003DMG400021289 Solanum tuberosum HOM05D004494 ORTHO05D005493 6.4e-15 85.9 45 88.9
A05p17960 Brassica napus HOM05D004494 ORTHO05D005493 8.3e-15 85.5 44 84.1
A08p01450 Brassica napus HOM05D004494 ORTHO05D005493 8.3e-15 85.5 44 84.1
C03p91710 Brassica napus HOM05D004494 ORTHO05D005493 8.3e-15 85.5 44 84.1
BraA05t20689Z Brassica rapa HOM05D004494 ORTHO05D005493 8.3e-15 85.5 44 84.1
GSVIVG01012570001 Vitis vinifera HOM05D004494 ORTHO05D005493 8.3e-15 85.5 40 92.5
QL09p054324 Quercus lobata HOM05D004494 ORTHO05D005493 1.1e-14 85.1 44 86.4
C06p15220 Brassica napus HOM05D004494 ORTHO05D005493 1.4e-14 84.7 46 80.4
Pp3c24_13920 Physcomitrium patens HOM05D004494 ORTHO05D005493 1.4e-14 84.7 43 83.7
GSVIVG01012562001 Vitis vinifera HOM05D004494 ORTHO05D005493 1.4e-14 84.7 45 86.7
BolC8t52568H Brassica oleracea HOM05D004494 ORTHO05D005493 4.1e-14 83.2 70 58.6
FAN08G0913 Fragaria x ananassa HOM05D004494 ORTHO05D005493 4.1e-14 83.2 47 85.1
FAN18G1159 Fragaria x ananassa HOM05D004494 ORTHO05D005493 4.1e-14 83.2 47 85.1
Mapoly0066s0049 Marchantia polymorpha HOM05D004494 ORTHO05D005493 4.1e-14 83.2 40 87.5
RcHm_v2.0_Chr7g0177031 Rosa chinensis HOM05D004494 ORTHO05D005493 4.1e-14 83.2 47 85.1
SMO145G0179 Selaginella moellendorffii HOM05D004494 ORTHO05D005493 5.4e-14 82.8 43 81.4
BolC6t36697H Brassica oleracea HOM05D004494 ORTHO05D005493 1.6e-13 81.3 44 81.8
MBI16_g26393_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 7.8e-13 79.0 43 81.4
SEGI_39556 Sequoiadendron giganteum HOM05D004494 ORTHO05D005493 1.3e-12 78.2 48 79.2
Aa31LG1G19660 Aethionema arabicum HOM05D004494 ORTHO05D005493 3.9e-12 76.6 64 54.7
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 5.0e-12 76.3 48 72.9
MD12G1077100 Malus domestica HOM05D004494 ORTHO05D005493 3.3e-11 73.6 43 79.1
MD14G1071000 Malus domestica HOM05D004494 ORTHO05D005493 3.3e-11 73.6 43 79.1
Aa31LG1G19360 Aethionema arabicum HOM05D004494 ORTHO05D005493 4.3e-11 73.2 99 39.4
Aa31LG8G1870 Aethionema arabicum HOM05D004494 ORTHO05D005493 5.6e-11 72.8 100 42.0
MD14G1070900 Malus domestica HOM05D004494 ORTHO05D005493 7.3e-11 72.4 45 68.9
Peaxi162Scf00111g00531 Petunia axillaris HOM05D004494 ORTHO05D005493 7.3e-11 72.4 66 57.6
arahy.Tifrunner.gnm1.ann1.W77FLI Arachis hypogaea HOM05D004001 ORTHO05D085545 2.1e-10 70.9 65 55.4
arahy.Tifrunner.gnm1.ann1.4AJK5S Arachis hypogaea HOM05D004494 ORTHO05D084485 2.8e-10 70.5 89 44.9
PRCOL_00006868 Prasinoderma coloniale HOM05D004494 ORTHO05D005493 6.2e-10 69.3 41 73.2
Cre07.g342352 Chlamydomonas reinhardtii HOM05D004494 ORTHO05D005493 1.0e-09 68.6 38 73.7
Mapoly0119s0017 Marchantia polymorpha HOM05D004494 ORTHO05D005493 1.0e-09 68.6 72 51.4
Os07g0105100 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 1.0e-09 68.6 65 55.4
Rhsim04G0032100 Rhododendron simsii HOM05D004494 ORTHO05D005493 2.3e-09 67.4 34 85.3
Aa31LG1G19670 Aethionema arabicum HOM05D000171 ORTHO05D000101 1.2e-08 65.1 33 78.8
Prupe.4G215400 Prunus persica HOM05D004494 ORTHO05D005493 1.2e-08 65.1 47 63.8
AT1G53690 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 5.8e-08 62.8 48 60.4
BcaC08g44099 Brassica carinata HOM05D004494 ORTHO05D005493 5.8e-08 62.8 77 44.2
C05p31860 Brassica napus HOM05D004494 ORTHO05D005493 7.5e-08 62.4 31 87.1
BolC5t31914H Brassica oleracea HOM05D004494 ORTHO05D005493 7.5e-08 62.4 31 87.1
Haze_27787 Corylus avellana HOM05D004494 ORTHO05D005493 9.8e-08 62.0 55 50.9
C08p50400 Brassica napus HOM05D004494 ORTHO05D005493 3.7e-07 60.1 32 78.1
Carub.0001s4296 Capsella rubella HOM05D004494 ORTHO05D005493 3.7e-07 60.1 44 61.4
arahy.Tifrunner.gnm1.ann1.VGS9ID Arachis hypogaea HOM05D004494 ORTHO05D005493 2.4e-06 57.4 37 64.9


User provided reference genes

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