Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.I0464U Arachis hypogaea HOM05D006444 ORTHO05D007748 9.8e-189 663.3 333 100.0
arahy.Tifrunner.gnm1.ann1.T18680 Arachis hypogaea HOM05D006444 ORTHO05D007748 2.1e-183 645.6 333 97.3
Medtr7g112320 Medicago truncatula HOM05D006444 ORTHO05D007748 8.4e-132 474.2 333 72.1
Glyma.19G230000 Glycine max HOM05D006444 ORTHO05D007748 8.7e-129 464.2 331 72.8
Glyma.03G233000 Glycine max HOM05D006444 ORTHO05D007748 2.5e-128 462.6 331 72.5
Phvul.001G226600 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 4.3e-128 461.8 333 71.5
VMungo1383G3166 Vigna mungo HOM05D006444 ORTHO05D007748 5.6e-128 461.5 333 71.5
TPR.G1652 Trifolium pratense HOM05D006444 ORTHO05D007748 7.4e-128 461.1 333 70.0
Lalb_Chr18g0045971 Lupinus albus HOM05D006444 ORTHO05D007748 1.1e-126 457.2 329 71.1
Ca_09322_v3 Cicer arietinum L. HOM05D006444 ORTHO05D007748 1.7e-124 449.9 334 70.7
Lj1g0016861 Lotus japonicus HOM05D006444 ORTHO05D007748 2.4e-118 429.5 345 65.5
Dinv30860 Davidia involucrata HOM05D006444 ORTHO05D007748 3.3e-112 409.1 338 62.7
QL03p017976 Quercus lobata HOM05D006444 ORTHO05D007748 1.5e-109 400.2 332 61.1
Potri.005G020600 Populus trichocarpa HOM05D006444 ORTHO05D007748 5.0e-108 395.2 334 61.1
Manes.09G174800 Manihot esculenta HOM05D006444 ORTHO05D007748 8.5e-108 394.4 337 59.9
Sabra05G0026600 Salix brachista HOM05D006444 ORTHO05D007748 8.5e-108 394.4 334 60.5
GSVIVG01031202001 Vitis vinifera HOM05D006444 ORTHO05D007748 1.6e-106 390.2 333 59.2
Haze_04092 Corylus avellana HOM05D006444 ORTHO05D007748 6.1e-106 388.3 335 60.0
Thecc.05G319500 Theobroma cacao HOM05D006444 ORTHO05D007748 9.1e-102 374.4 338 60.4
COL.COLO4_04127 Corchorus olitorius HOM05D006444 ORTHO05D007748 5.9e-101 371.7 335 58.5
Phvul.007G199800 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 1.7e-100 370.2 334 60.5
CSS0047685 Camellia sinensis var. sinensis HOM05D006444 ORTHO05D007748 2.5e-99 366.3 337 56.4
CiPaw.07G026800 Carya illinoinensis HOM05D006444 ORTHO05D007748 2.5e-99 366.3 320 58.4
Prupe.6G316100 Prunus persica HOM05D006444 ORTHO05D007748 7.2e-99 364.8 337 58.5
Eucgr.H03280 Eucalyptus grandis HOM05D006444 ORTHO05D007748 2.7e-98 362.8 337 57.9
VMungo0720G1741 Vigna mungo HOM05D006444 ORTHO05D007748 3.6e-98 362.5 334 59.6
Rhsim11G0093000 Rhododendron simsii HOM05D006444 ORTHO05D007748 8.0e-98 361.3 332 56.0
vmacro01541 Vaccinium macrocarpon HOM05D006444 ORTHO05D007748 1.0e-97 360.9 331 55.9
Ciclev10001747m.g Citrus clementina HOM05D006444 ORTHO05D007748 1.4e-97 360.5 338 57.1
Psat3g013840 Pisum sativum HOM05D006444 ORTHO05D007748 1.8e-97 360.1 262 68.7
Glyma.10G148900 Glycine max HOM05D006444 ORTHO05D007748 1.5e-96 357.1 333 58.3
PGR031G3221 Punica granatum HOM05D006444 ORTHO05D007748 1.5e-96 357.1 337 54.0
Gohir.A08G207200 Gossypium hirsutum HOM05D006444 ORTHO05D007748 2.8e-95 352.8 336 56.0
Gorai.004G237700 Gossypium raimondii HOM05D006444 ORTHO05D007748 2.4e-94 349.7 336 55.4
Gohir.D08G223800 Gossypium hirsutum HOM05D006444 ORTHO05D007748 5.3e-94 348.6 336 55.4
Sed0009356 Sechium edule HOM05D006444 ORTHO05D007748 1.6e-93 347.1 326 55.5
ClCG03G017520 Citrullus lanatus HOM05D006444 ORTHO05D007748 2.6e-93 346.3 331 54.1
Cpa.g.sc48.132 Carica papaya HOM05D006444 ORTHO05D007748 1.3e-92 344.0 382 49.7
TAR365G0240 Trochodendron aralioides HOM05D006444 ORTHO05D007748 1.7e-92 343.6 359 52.6
Hma1.2p1_0472F.1_g159820 Hydrangea macrophylla HOM05D006444 ORTHO05D007748 3.8e-92 342.4 349 55.6
CsaV3_1G038500 Cucumis sativus L. HOM05D006444 ORTHO05D007748 2.7e-90 336.3 327 52.6
Nitab4.5_0014337g0020 Nicotiana tabacum HOM05D006444 ORTHO05D007748 3.6e-90 335.9 336 54.5
Peaxi162Scf00073g00128 Petunia axillaris HOM05D006444 ORTHO05D007748 1.8e-89 333.6 331 55.3
MELO3C015276.2 Cucumis melo HOM05D006444 ORTHO05D007748 3.0e-89 332.8 327 53.2
FAN14G0724 Fragaria x ananassa HOM05D006444 ORTHO05D007748 5.2e-89 332.0 333 53.5
FAN05G1290 Fragaria x ananassa HOM05D006444 ORTHO05D007748 1.2e-88 330.9 333 53.5
TWI56G1276 Tripterygium wilfordii HOM05D006444 ORTHO05D007748 1.5e-88 330.5 334 55.1
FvH4_6g07110 Fragaria vesca HOM05D006444 ORTHO05D007748 2.0e-88 330.1 333 53.2
RcHm_v2.0_Chr3g0456691 Rosa chinensis HOM05D006444 ORTHO05D007748 9.7e-88 327.8 333 52.3
Atru.chr2.132 Acer truncatum HOM05D006444 ORTHO05D007748 2.8e-87 326.2 330 53.9
Hund21734 Selenicereus undatus HOM05D006444 ORTHO05D007748 1.4e-86 323.9 342 52.9
Nitab4.5_0002715g0070 Nicotiana tabacum HOM05D006444 ORTHO05D007748 1.8e-86 323.6 336 53.0
FAN02G1429 Fragaria x ananassa HOM05D006444 ORTHO05D007748 2.4e-86 323.2 333 52.9
Sopen01g043670 Solanum pennellii HOM05D006444 ORTHO05D007748 2.4e-86 323.2 335 52.5
Cc10_g14110 Coffea canephora HOM05D006444 ORTHO05D007748 7.0e-86 321.6 332 52.7
Nn4g25689 Nelumbo nucifera HOM05D006444 ORTHO05D007748 7.0e-86 321.6 344 49.4
THA.LOC104818740 Tarenaya hassleriana HOM05D006444 ORTHO05D007748 1.6e-85 320.5 329 55.3
Lsat_1_v5_gn_7_73840 Lactuca sativa HOM05D006444 ORTHO05D007748 5.0e-84 315.5 336 51.8
DCAR_025267 Daucus carota HOM05D006444 ORTHO05D007748 8.5e-84 314.7 324 52.2
Nn3g21596 Nelumbo nucifera HOM05D006444 ORTHO05D007748 1.8e-81 307.0 344 49.1
CAN.G1273.16 Capsicum annuum HOM05D006444 ORTHO05D007748 6.8e-81 305.1 366 47.5
EL10Ac4g09842 Beta vulgaris HOM05D006444 ORTHO05D007748 2.6e-80 303.1 340 49.7
PGSC0003DMG400024779 Solanum tuberosum HOM05D006444 ORTHO05D007748 7.5e-80 301.6 358 48.3
Oeu045894.1 Olea europaea HOM05D006444 ORTHO05D007748 2.4e-78 296.6 315 51.1
MSTRG.20391 Avicennia marina HOM05D006444 ORTHO05D007748 5.4e-78 295.4 333 52.9
HanXRQChr15g0495151 Helianthus annuus HOM05D006444 ORTHO05D007748 7.0e-78 295.0 339 51.0
Oeu028007.2 Olea europaea HOM05D006444 ORTHO05D007748 4.5e-77 292.4 334 49.1
ECA236G3124 Erigeron canadensis HOM05D006444 ORTHO05D007748 3.8e-76 289.3 317 48.6
Migut.B00986 Erythranthe guttata HOM05D006444 ORTHO05D007748 8.6e-76 288.1 349 51.6
CANSAT54G2069 Cannabis sativa HOM05D006444 ORTHO05D007748 2.5e-75 286.6 329 48.3
Lj5A342G70 Lonicera japonica HOM05D006444 ORTHO05D007748 1.2e-74 284.3 277 54.9
SGA_v2.0_scaffold4G01962 Striga asiatica HOM05D006444 ORTHO05D007748 1.8e-73 280.4 335 47.8
Sp2g21090 Schrenkiella parvula HOM05D006444 ORTHO05D007748 8.9e-73 278.1 325 51.4
Aa31LG11G9750 Aethionema arabicum HOM05D006444 ORTHO05D007748 1.2e-72 277.7 326 50.6
ATR0706G081 Amborella trichopoda HOM05D006444 ORTHO05D007748 9.2e-70 268.1 308 49.7
PSO357G0038 Papaver somniferum HOM05D006444 ORTHO05D007748 9.2e-70 268.1 353 45.3
SalBow7G4019 Salvia bowleyana HOM05D006444 ORTHO05D007748 9.2e-70 268.1 312 48.1
Thhalv10004624m.g Eutrema salsugineum HOM05D006444 ORTHO05D007748 1.6e-69 267.3 326 50.0
A06p37110 Brassica napus HOM05D006444 ORTHO05D007748 2.7e-69 266.5 326 49.7
BraA06t26637Z Brassica rapa HOM05D006444 ORTHO05D007748 2.7e-69 266.5 326 49.7
Carub.0006s2458 Capsella rubella HOM05D006444 ORTHO05D007748 1.0e-68 264.6 325 48.6
Thecc.04G293900 Theobroma cacao HOM05D006444 ORTHO05D007748 1.7e-68 263.8 345 44.6
BolC7t44660H Brassica oleracea HOM05D006444 ORTHO05D007748 6.6e-68 261.9 326 48.8
AT5G26940 Arabidopsis thaliana HOM05D006444 ORTHO05D007748 8.6e-68 261.5 321 49.8
CDE09G1197 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 1.1e-67 261.2 201 64.2
PSO170G3086 Papaver somniferum HOM05D006444 ORTHO05D007748 1.5e-67 260.8 354 44.1
CARHR186630 Cardamine hirsuta HOM05D006444 ORTHO05D007748 1.9e-67 260.4 327 48.0
AL6G38850 Arabidopsis lyrata HOM05D006444 ORTHO05D007748 4.7e-66 255.8 329 49.8
Duzib151G0636 Durio zibethinus HOM05D006444 ORTHO05D007748 6.8e-65 251.9 345 43.5
AUR62005256 Chenopodium quinoa HOM05D006444 ORTHO05D007748 1.2e-64 251.1 305 49.5
AUR62000705 Chenopodium quinoa HOM05D006444 ORTHO05D007748 1.5e-64 250.8 305 48.9
CDE02G1332 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 9.8e-64 248.1 219 58.0
Ciclev10005435m.g Citrus clementina HOM05D006444 ORTHO05D007748 1.3e-63 247.7 330 46.4
C07p41320 Brassica napus HOM05D006444 ORTHO05D007748 1.7e-63 247.3 351 45.3
HPP92_011867 Vanilla planifolia HOM05D006444 ORTHO05D007748 1.7e-63 247.3 271 49.1
Aqoxy2G02847 Aquilegia oxysepala HOM05D006444 ORTHO05D007748 3.2e-62 243.0 328 44.5
MBI19_g14287_MAGBIO Magnolia biondii HOM05D006444 ORTHO05D007748 1.0e-60 238.0 237 52.7
Sc16g0008870 Simmondsia chinensis HOM05D006444 ORTHO05D007748 3.0e-60 236.5 265 49.8
Zm00001eb014130 Zea mays HOM05D006444 ORTHO05D007748 1.1e-59 234.6 316 44.0
Os03g0301400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 1.6e-58 230.7 298 44.6
unitig_46.g18373 Utricularia gibba HOM05D006444 ORTHO05D007748 1.6e-58 230.7 338 43.8
Prupe.1G126500 Prunus persica HOM05D006444 ORTHO05D007748 1.4e-57 227.6 216 54.2
Hund21730 Selenicereus undatus HOM05D006444 ORTHO05D007748 1.2e-56 224.6 212 55.7
RcHm_v2.0_Chr4g0424201 Rosa chinensis HOM05D006444 ORTHO05D007748 4.1e-54 216.1 232 52.2
MD13G1159900 Malus domestica HOM05D006444 ORTHO05D007748 5.4e-54 215.7 241 50.2
MD12G1208900 Malus domestica HOM05D006444 ORTHO05D007748 9.5e-51 204.9 195 56.9
AagrBONN_evm.TU.Sc2ySwM_344.4230 Anthoceros agrestis HOM05D006444 ORTHO05D007748 2.0e-48 197.2 208 50.0
TAR362G0047 Trochodendron aralioides HOM05D006444 ORTHO05D007748 2.6e-48 196.8 208 49.5
Actinidia35534 Actinidia chinensis HOM05D006444 ORTHO05D007748 3.4e-48 196.4 213 50.2
Os04g0623400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 8.3e-47 191.8 198 50.0
Mapoly0162s0013 Marchantia polymorpha HOM05D006444 ORTHO05D007748 5.1e-44 182.6 203 47.8
FAN07G1328 Fragaria x ananassa HOM05D006444 ORTHO05D007748 3.6e-42 176.4 202 48.5
SMO116G0265 Selaginella moellendorffii HOM05D006444 ORTHO05D007748 1.4e-41 174.5 260 40.8
FvH4_4g19220 Fragaria vesca HOM05D006444 ORTHO05D007748 1.2e-40 171.4 200 46.5
SEGI_10576 Sequoiadendron giganteum HOM05D006444 ORTHO05D007748 2.9e-39 166.8 149 55.7
FAN12G0061 Fragaria x ananassa HOM05D006444 ORTHO05D007748 4.6e-37 159.5 200 45.0
FAN12G3514 Fragaria x ananassa HOM05D006444 ORTHO05D007748 4.6e-37 159.5 203 45.8
Pp3c18_14120 Physcomitrium patens HOM05D001061 ORTHO05D007748 8.7e-36 155.2 198 42.9
MD12G1209000 Malus domestica HOM05D006444 ORTHO05D007748 2.6e-32 143.7 135 54.1
FAN09G3591 Fragaria x ananassa HOM05D006444 ORTHO05D007748 1.7e-31 141.0 143 53.1
Atru.chr4.2940 Acer truncatum HOM05D006444 ORTHO05D007748 1.9e-30 137.5 121 55.4
MCO01G157 Micromonas commoda HOM05D005236 ORTHO05D006557 1.3e-23 114.8 209 35.4
Actinidia35535 Actinidia chinensis HOM05D006444 ORTHO05D007748 3.3e-19 100.1 85 61.2
EL10Ac4g09387 Beta vulgaris HOM05D006444 ORTHO05D007748 4.8e-18 96.3 80 62.5
PRCOL_00002449 Prasinoderma coloniale HOM05D005236 ORTHO05D006557 3.0e-12 77.0 201 31.8
Cre01.g021850 Chlamydomonas reinhardtii HOM05D005236 ORTHO05D006557 1.3e-07 61.6 183 32.2
SEGI_25648 Sequoiadendron giganteum HOM05D006444 ORTHO05D007748 1.1e-06 58.5 42 71.4


User provided reference genes

Program Settings