Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 0.0e+00 1144.8 582 100.0
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 0.0e+00 1143.6 582 99.8
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 2.1e-287 991.9 598 84.6
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 5.7e-285 983.8 598 84.3
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 9.8e-285 983.0 598 83.1
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 1.7e-284 982.2 598 82.9
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 8.3e-284 979.9 598 83.1
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 1.4e-283 979.2 598 83.4
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 3.1e-283 978.0 598 83.8
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 4.1e-283 977.6 598 83.4
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 3.6e-279 964.5 589 83.2
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 4.9e-268 927.5 562 83.6
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 4.1e-267 924.5 596 79.4
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 2.7e-266 921.8 596 78.2
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 6.6e-265 917.1 587 79.7
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 9.5e-264 913.3 596 78.0
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 8.0e-263 910.2 620 76.0
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 1.4e-262 909.4 596 77.2
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 1.4e-262 909.4 587 78.4
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 8.9e-262 906.7 588 76.9
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 8.9e-262 906.7 596 77.0
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 2.0e-261 905.6 587 76.7
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 9.8e-261 903.3 596 76.7
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 1.7e-260 902.5 597 77.1
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 1.7e-260 902.5 596 77.0
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 2.3e-257 892.1 596 76.0
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 3.3e-256 888.3 610 74.4
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 9.5e-256 886.7 597 76.4
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.6e-255 885.9 596 74.7
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 2.1e-255 885.6 602 75.2
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 3.6e-255 884.8 596 76.0
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 4.7e-255 884.4 596 75.5
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 6.2e-255 884.0 597 75.9
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 1.8e-254 882.5 595 75.1
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 2.3e-254 882.1 597 75.2
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 2.3e-254 882.1 596 75.0
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 6.8e-254 880.6 593 76.4
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 8.9e-254 880.2 589 75.4
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 1.2e-253 879.8 596 75.7
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 1.5e-253 879.4 596 75.8
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 5.8e-253 877.5 586 75.3
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 9.8e-253 876.7 593 74.7
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 1.7e-252 875.9 595 74.1
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.7e-252 875.9 597 75.4
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.7e-252 875.9 597 75.4
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 2.9e-252 875.2 589 74.9
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 6.4e-252 874.0 596 73.5
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 8.3e-252 873.6 589 75.2
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 1.1e-251 873.2 563 78.7
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.9e-251 872.5 594 74.4
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 3.2e-251 871.7 589 74.9
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 7.1e-251 870.5 597 73.9
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 7.1e-251 870.5 594 73.4
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 2.1e-250 869.0 594 74.2
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 6.0e-250 867.5 600 73.8
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 6.0e-250 867.5 597 74.2
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 7.8e-250 867.1 597 73.9
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.3e-249 866.3 594 74.2
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 1.7e-249 865.9 594 73.2
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 3.0e-249 865.1 597 73.7
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 3.9e-249 864.8 600 73.7
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 6.6e-249 864.0 595 74.3
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 8.6e-249 863.6 611 73.0
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 1.1e-248 863.2 593 74.4
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.9e-248 862.4 597 73.7
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 2.5e-248 862.1 609 72.7
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 3.3e-248 861.7 598 73.7
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 4.3e-248 861.3 597 73.9
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 5.6e-248 860.9 594 73.2
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 7.3e-248 860.5 597 73.5
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 1.2e-247 859.8 597 73.9
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 1.6e-247 859.4 590 74.7
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 2.8e-247 858.6 594 72.4
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 4.7e-247 857.8 644 68.5
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 8.1e-247 857.1 591 73.4
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 5.2e-246 854.4 594 72.4
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 5.2e-246 854.4 594 72.4
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 5.2e-246 854.4 594 72.4
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 6.8e-246 854.0 594 72.4
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 8.9e-246 853.6 596 73.5
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 1.5e-245 852.8 594 72.7
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 1.5e-245 852.8 594 72.2
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 9.9e-245 850.1 590 73.9
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 2.9e-244 848.6 589 72.7
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 2.9e-244 848.6 588 72.8
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 3.7e-244 848.2 597 72.9
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 1.9e-243 845.9 591 72.8
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 4.1e-243 844.7 607 71.5
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 4.6e-242 841.3 653 67.2
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 1.3e-241 839.7 593 72.2
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 2.5e-240 835.5 560 76.4
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.1e-239 832.4 598 72.4
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 8.1e-239 830.5 589 71.3
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 5.2e-238 827.8 620 69.0
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 1.5e-237 826.2 677 64.7
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 8.4e-236 820.5 594 69.4
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 1.4e-235 819.7 596 70.8
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 1.7e-233 812.8 596 70.1
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.9e-232 809.3 562 73.8
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 1.6e-231 806.2 540 75.0
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 2.1e-231 805.8 547 75.0
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 5.8e-229 797.7 596 70.0
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 4.2e-227 791.6 585 70.3
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 1.2e-226 790.0 591 70.1
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.2e-226 790.0 585 70.1
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 6.6e-225 784.3 599 69.3
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 7.9e-218 760.8 474 80.6
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 3.9e-217 758.4 471 79.2
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 4.0e-214 748.4 596 66.6
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 3.2e-211 738.8 651 59.9
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 1.6e-210 736.5 591 62.9
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 2.7e-210 735.7 635 62.2
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 7.6e-205 717.6 591 63.5
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 1.4e-203 713.4 593 62.4
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 7.2e-203 711.1 494 73.1
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 5.1e-201 704.9 490 73.3
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 5.5e-195 684.9 427 78.5
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.4e-190 670.2 542 66.1
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.0e-169 600.9 580 54.7
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 1.5e-168 597.0 436 70.9
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 2.6e-168 596.3 494 64.2
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 8.5e-164 581.3 567 53.8
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 1.2e-162 577.4 591 51.4
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 1.7e-151 540.4 338 82.5
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 9.8e-144 514.6 428 61.4
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 1.1e-137 494.6 605 46.3
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 1.9e-131 473.8 570 45.4
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 1.2e-130 471.1 362 68.2
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 4.4e-128 462.6 288 80.9
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 2.9e-127 459.9 400 60.0
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.1e-125 453.8 530 50.8
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.1e-115 421.4 248 82.7
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.9e-107 394.0 310 66.5
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 3.8e-103 379.8 288 67.4
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.4e-97 361.3 427 49.6
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 3.0e-84 317.0 278 59.4
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.4e-76 291.6 311 52.7
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.8e-73 281.2 181 79.0
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 3.8e-71 273.5 667 30.6
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 3.2e-70 270.4 470 37.9
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 1.5e-67 261.5 153 83.0
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 3.0e-60 237.3 155 78.1
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 4.4e-59 233.4 149 79.9
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.0e-44 185.7 102 87.3
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.0e-44 184.1 107 84.1
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 1.7e-42 178.3 614 27.9
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 4.6e-32 143.7 101 71.3
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.7e-31 141.7 120 57.5
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 7.0e-25 119.8 164 40.2
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.2e-21 109.0 66 77.3
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 3.7e-18 97.4 79 55.7
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 1.9e-17 95.1 93 59.1
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 2.3e-15 88.2 481 23.9
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.1e-14 85.9 93 49.5
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 1.5e-14 85.5 49 81.6
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 7.3e-14 83.2 48 81.2
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 2.8e-13 81.3 72 50.0
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.4e-12 79.0 53 77.4
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 3.1e-12 77.8 53 77.4
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 5.2e-12 77.0 61 68.9
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 2.0e-11 75.1 54 68.5
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 4.4e-11 73.9 93 47.3
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 1.3e-10 72.4 55 56.4
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 2.2e-10 71.6 207 28.5
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 7.8e-08 63.2 54 63.0
Os08g0323266 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D026010 6.6e-07 60.1 47 61.7


User provided reference genes

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