Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.H9FWK3 Arachis hypogaea HOM05D001698 ORTHO05D001805 1.4e-77 293.1 176 100.0
arahy.Tifrunner.gnm1.ann1.H3TEND Arachis hypogaea HOM05D001698 ORTHO05D001805 8.9e-56 220.7 239 66.9
Lalb_Chr25g0286961 Lupinus albus HOM05D001698 ORTHO05D001805 2.1e-17 93.2 252 33.7
Lalb_Chr25g0286951 Lupinus albus HOM05D001698 ORTHO05D001805 2.4e-16 89.7 248 32.3
Lalb_Chr20g0110191 Lupinus albus HOM05D001698 ORTHO05D001805 5.8e-15 85.1 249 32.1
GSVIVG01033618001 Vitis vinifera HOM05D001698 ORTHO05D001805 7.6e-15 84.7 184 35.9
Potri.016G037300 Populus trichocarpa HOM05D001698 ORTHO05D001805 8.4e-14 81.3 187 35.3
TPR.G32716 Trifolium pratense HOM05D001698 ORTHO05D001805 2.4e-13 79.7 250 33.6
Psat3g076560 Pisum sativum HOM05D001698 ORTHO05D001805 9.3e-13 77.8 164 37.8
Medtr7g090410 Medicago truncatula HOM05D001698 ORTHO05D001805 2.1e-12 76.6 188 38.8
TPR.G19138 Trifolium pratense HOM05D001698 ORTHO05D001805 2.1e-12 76.6 182 34.6
Psat3g076680 Pisum sativum HOM05D001698 ORTHO05D001805 3.5e-12 75.9 164 37.8
Medtr1g048710 Medicago truncatula HOM05D001698 ORTHO05D001805 6.0e-12 75.1 237 31.6
Medtr1g048720 Medicago truncatula HOM05D001698 ORTHO05D001805 6.0e-12 75.1 182 35.2
Medtr1g048750 Medicago truncatula HOM05D001698 ORTHO05D001805 6.0e-12 75.1 187 36.9
Glyma.03G130400 Glycine max HOM05D001698 ORTHO05D001805 7.9e-12 74.7 186 36.0
Psat3g076480 Pisum sativum HOM05D001698 ORTHO05D001805 1.3e-11 73.9 164 37.2
Glyma.03G130600 Glycine max HOM05D001698 ORTHO05D001805 1.8e-11 73.6 186 34.9
Lj1g0014872 Lotus japonicus HOM05D001698 ORTHO05D001805 1.8e-11 73.6 189 31.7
Manes.08G058700 Manihot esculenta HOM05D001698 ORTHO05D001805 5.1e-11 72.0 252 29.4
Ca_26784_v3 Cicer arietinum L. HOM05D001698 ORTHO05D001805 8.7e-11 71.2 199 35.2
Potri.006G037200 Populus trichocarpa HOM05D001698 ORTHO05D001805 8.7e-11 71.2 183 32.8
Dinv12050 Davidia involucrata HOM05D001698 ORTHO05D001805 1.1e-10 70.9 187 33.2
RcHm_v2.0_Chr6g0270891 Rosa chinensis HOM05D001698 ORTHO05D001805 1.1e-10 70.9 201 33.8
Thecc.09G233200 Theobroma cacao HOM05D001698 ORTHO05D001805 1.1e-10 70.9 210 31.4
Potri.006G037600 Populus trichocarpa HOM05D001698 ORTHO05D001805 1.5e-10 70.5 251 30.3
GSVIVG01027323001 Vitis vinifera HOM05D001698 ORTHO05D001805 1.5e-10 70.5 201 33.8
Prupe.7G040500 Prunus persica HOM05D001698 ORTHO05D001805 1.9e-10 70.1 136 41.9
VMungo1383G1215 Vigna mungo HOM05D001698 ORTHO05D001805 3.3e-10 69.3 219 32.0
FAN15G1141 Fragaria x ananassa HOM05D001698 ORTHO05D001805 7.4e-10 68.2 184 33.7
FAN24G2962 Fragaria x ananassa HOM05D001698 ORTHO05D001805 7.4e-10 68.2 184 33.7
Gorai.006G120300 Gossypium raimondii HOM05D001698 ORTHO05D001805 7.4e-10 68.2 158 36.7
Atru.chr1.1450 Acer truncatum HOM05D001698 ORTHO05D001805 9.6e-10 67.8 184 34.2
Dinv09479 Davidia involucrata HOM05D001698 ORTHO05D001805 9.6e-10 67.8 187 33.2
CiPaw.09G047100 Carya illinoinensis HOM05D001698 ORTHO05D001805 1.3e-09 67.4 183 33.9
FvH4_2g11650 Fragaria vesca HOM05D001698 ORTHO05D001805 1.6e-09 67.0 184 33.2
Sabra06G0025300 Salix brachista HOM05D001698 ORTHO05D001805 1.6e-09 67.0 183 32.8
Lj1g0024560 Lotus japonicus HOM05D001698 ORTHO05D001805 2.1e-09 66.6 185 30.8
Psat6g049440 Pisum sativum HOM05D001698 ORTHO05D001805 2.1e-09 66.6 249 29.3
Phvul.001G126400 Phaseolus vulgaris HOM05D001698 ORTHO05D001805 2.8e-09 66.2 225 30.2
Gohir.D09G103200 Gossypium hirsutum HOM05D001698 ORTHO05D001805 3.7e-09 65.9 156 35.9
QL08p016010 Quercus lobata HOM05D001698 ORTHO05D001805 6.2e-09 65.1 132 37.1
GSVIVG01034621001 Vitis vinifera HOM05D001698 ORTHO05D001805 6.2e-09 65.1 132 36.4
Prupe.7G039900 Prunus persica HOM05D001698 ORTHO05D001805 1.1e-08 64.3 133 39.1
Sp5g05600 Schrenkiella parvula HOM05D001698 ORTHO05D001805 1.1e-08 64.3 176 34.1
COL.COLO4_07587 Corchorus olitorius HOM05D001698 ORTHO05D001805 1.4e-08 63.9 181 32.0
Gohir.A05G069200 Gossypium hirsutum HOM05D001698 ORTHO05D001805 1.4e-08 63.9 143 37.8
Gohir.A09G106500 Gossypium hirsutum HOM05D001698 ORTHO05D001805 1.4e-08 63.9 158 35.4
CiPaw.10G039600 Carya illinoinensis HOM05D001698 ORTHO05D001805 2.4e-08 63.2 132 39.4
Gohir.D05G072100 Gossypium hirsutum HOM05D001698 ORTHO05D001805 2.4e-08 63.2 118 39.8
Lj1g0019186 Lotus japonicus HOM05D001698 ORTHO05D001805 2.4e-08 63.2 194 33.0
Prupe.7G040100 Prunus persica HOM05D001698 ORTHO05D001805 2.4e-08 63.2 133 39.1
Cfa020011 Carpinus fangiana HOM05D001698 ORTHO05D001805 3.1e-08 62.8 150 34.0
Gorai.009G073100 Gossypium raimondii HOM05D001698 ORTHO05D001805 3.1e-08 62.8 143 44.8
Lj1P1092T11 Lonicera japonica HOM05D001698 ORTHO05D001805 3.1e-08 62.8 199 34.7
Lj1g0017441 Lotus japonicus HOM05D001698 ORTHO05D001805 3.1e-08 62.8 243 28.4
QL07p009901 Quercus lobata HOM05D001698 ORTHO05D001805 3.1e-08 62.8 185 30.3
TWI53G2092 Tripterygium wilfordii HOM05D001698 ORTHO05D001805 3.1e-08 62.8 207 30.4
AT2G41240 Arabidopsis thaliana HOM05D001698 ORTHO05D001805 4.0e-08 62.4 157 35.0
QL08p015482 Quercus lobata HOM05D001698 ORTHO05D001805 4.0e-08 62.4 134 37.3
Carub.0005s2372 Capsella rubella HOM05D001698 ORTHO05D001805 5.3e-08 62.0 132 37.9
THA.LOC104824402 Tarenaya hassleriana HOM05D001698 ORTHO05D001805 5.3e-08 62.0 132 34.8
TAR623G0359 Trochodendron aralioides HOM05D001698 ORTHO05D001805 5.3e-08 62.0 133 36.8
Atru.chr1.1451 Acer truncatum HOM05D001698 ORTHO05D001805 9.0e-08 61.2 132 38.6
COL.COLO4_07588 Corchorus olitorius HOM05D001698 ORTHO05D001805 9.0e-08 61.2 156 31.4
Lj1A1094T41 Lonicera japonica HOM05D001698 ORTHO05D001805 9.0e-08 61.2 212 32.5
Sabra06G0025500 Salix brachista HOM05D001698 ORTHO05D001805 9.0e-08 61.2 211 30.3
Thhalv10006189m.g Eutrema salsugineum HOM05D001698 ORTHO05D001805 1.2e-07 60.8 127 37.8
AL4G39220 Arabidopsis lyrata HOM05D001698 ORTHO05D001805 1.5e-07 60.5 157 33.8
Prupe.7G040300 Prunus persica HOM05D001698 ORTHO05D001805 1.5e-07 60.5 136 38.2
AL5G38430 Arabidopsis lyrata HOM05D001698 ORTHO05D001805 2.0e-07 60.1 129 37.2
BcaB02g08337 Brassica carinata HOM05D001698 ORTHO05D001805 2.0e-07 60.1 129 37.2
BcaC02g09883 Brassica carinata HOM05D001698 ORTHO05D001805 2.0e-07 60.1 127 37.0
C04p35580 Brassica napus HOM05D001698 ORTHO05D001805 2.0e-07 60.1 127 37.0
BolC4t25247H Brassica oleracea HOM05D001698 ORTHO05D001805 2.0e-07 60.1 127 37.0
CANSAT64G2931 Cannabis sativa HOM05D001698 ORTHO05D001805 2.0e-07 60.1 133 36.8
Sp5g05610 Schrenkiella parvula HOM05D001698 ORTHO05D001805 2.0e-07 60.1 127 38.6
THA.LOC104816108 Tarenaya hassleriana HOM05D001698 ORTHO05D001805 2.0e-07 60.1 140 40.7
A04p03650 Brassica napus HOM05D001698 ORTHO05D001805 2.6e-07 59.7 127 37.0
BraA04t16070Z Brassica rapa HOM05D001698 ORTHO05D001805 2.6e-07 59.7 127 37.0
CARHR136330 Cardamine hirsuta HOM05D001698 ORTHO05D001805 2.6e-07 59.7 178 33.7
CARHR167120 Cardamine hirsuta HOM05D001698 ORTHO05D001805 2.6e-07 59.7 127 37.0
Thhalv10006191m.g Eutrema salsugineum HOM05D001698 ORTHO05D001805 2.6e-07 59.7 127 37.0
RcHm_v2.0_Chr1g0321521 Rosa chinensis HOM05D001698 ORTHO05D001805 2.6e-07 59.7 199 33.2
Aa31LG10G11850 Aethionema arabicum HOM05D001698 ORTHO05D001805 3.4e-07 59.3 132 37.1
BcaB02g08339 Brassica carinata HOM05D001698 ORTHO05D001805 3.4e-07 59.3 133 36.1
BraA04t16068Z Brassica rapa HOM05D001698 ORTHO05D001805 3.4e-07 59.3 117 36.8
Aa31LG10G11880 Aethionema arabicum HOM05D001698 ORTHO05D001805 4.5e-07 58.9 132 36.4
MD14G1086500 Malus domestica HOM05D001698 ORTHO05D001805 4.5e-07 58.9 135 37.0
AT3G56970 Arabidopsis thaliana HOM05D001698 ORTHO05D001805 5.8e-07 58.5 129 35.7
Carub.0005s2371 Capsella rubella HOM05D001698 ORTHO05D001805 5.8e-07 58.5 129 36.4
A04p03670 Brassica napus HOM05D001698 ORTHO05D001805 7.6e-07 58.2 117 36.8
A05p02160 Brassica napus HOM05D001698 ORTHO05D001805 7.6e-07 58.2 158 32.9
BraA05t19212Z Brassica rapa HOM05D001698 ORTHO05D001805 7.6e-07 58.2 158 32.9
Duzib170G0503 Durio zibethinus HOM05D001698 ORTHO05D001805 7.6e-07 58.2 108 39.8
Oeu063777.1 Olea europaea HOM05D001698 ORTHO05D001805 7.6e-07 58.2 132 36.4
Prupe.1G213700 Prunus persica HOM05D001698 ORTHO05D001805 7.6e-07 58.2 43 65.1
Actinidia38158 Actinidia chinensis HOM05D001698 ORTHO05D001805 9.9e-07 57.8 80 50.0
CSS0009166 Camellia sinensis var. sinensis HOM05D001698 ORTHO05D001805 9.9e-07 57.8 166 34.3
CiPaw.12G123000 Carya illinoinensis HOM05D001698 ORTHO05D001805 9.9e-07 57.8 146 35.6
Thhalv10006491m.g Eutrema salsugineum HOM05D001698 ORTHO05D001805 9.9e-07 57.8 127 35.4
Nn7g36675 Nelumbo nucifera HOM05D001698 ORTHO05D001805 9.9e-07 57.8 133 34.6
Peaxi162Scf00772g00076 Petunia axillaris HOM05D001698 ORTHO05D001805 9.9e-07 57.8 132 36.4
AT3G56980 Arabidopsis thaliana HOM05D001698 ORTHO05D001805 1.3e-06 57.4 129 36.4
Thhalv10017167m.g Eutrema salsugineum HOM05D001698 ORTHO05D001805 1.3e-06 57.4 127 35.4
CARHR167130 Cardamine hirsuta HOM05D001698 ORTHO05D001805 1.7e-06 57.0 127 36.2
Nitab4.5_0006081g0010 Nicotiana tabacum HOM05D001698 ORTHO05D001805 1.7e-06 57.0 166 33.7
BcaC02g09890 Brassica carinata HOM05D001698 ORTHO05D001805 2.2e-06 56.6 117 35.9
C04p35500 Brassica napus HOM05D001698 ORTHO05D001805 2.2e-06 56.6 117 35.9
AUR62030330 Chenopodium quinoa HOM05D001698 ORTHO05D001805 2.2e-06 56.6 177 30.5
Haze_09539 Corylus avellana HOM05D001698 ORTHO05D001805 2.2e-06 56.6 148 37.8
FAN03G2766 Fragaria x ananassa HOM05D001698 ORTHO05D001805 2.2e-06 56.6 119 37.8
Hma1.2p1_0553F.1_g177780 Hydrangea macrophylla HOM05D001698 ORTHO05D001805 2.2e-06 56.6 133 33.8
CSS0022304 Camellia sinensis var. sinensis HOM05D001698 ORTHO05D001805 2.9e-06 56.2 154 35.1
MELO3C019065.2 Cucumis melo HOM05D001698 ORTHO05D001805 2.9e-06 56.2 75 45.3
BcaC02g09887 Brassica carinata HOM05D001698 ORTHO05D001805 3.8e-06 55.8 117 35.9
C04p35520 Brassica napus HOM05D001698 ORTHO05D001805 3.8e-06 55.8 117 35.9
BolC4t25107H Brassica oleracea HOM05D001698 ORTHO05D001805 3.8e-06 55.8 117 35.9
Haze_20220 Corylus avellana HOM05D001698 ORTHO05D001805 3.8e-06 55.8 252 26.2
DCAR_020569 Daucus carota HOM05D001698 ORTHO05D001805 3.8e-06 55.8 116 33.6
Prupe.7G039800 Prunus persica HOM05D001698 ORTHO05D001805 3.8e-06 55.8 133 36.1
A04p03710 Brassica napus HOM05D001698 ORTHO05D001805 4.9e-06 55.5 129 35.7
BraA04t16063Z Brassica rapa HOM05D001698 ORTHO05D001805 4.9e-06 55.5 129 35.7
CANSAT64G2277 Cannabis sativa HOM05D001698 ORTHO05D001805 4.9e-06 55.5 133 34.6
Sp4g23560 Schrenkiella parvula HOM05D001698 ORTHO05D001805 4.9e-06 55.5 157 31.8
TWI77G0006 Tripterygium wilfordii HOM05D001698 ORTHO05D001805 4.9e-06 55.5 213 29.1
BcaC02g12765 Brassica carinata HOM05D001698 ORTHO05D001805 6.4e-06 55.1 158 31.6
Cfa020009 Carpinus fangiana HOM05D001698 ORTHO05D001805 6.4e-06 55.1 247 27.5
Ciclev10006413m.g Citrus clementina HOM05D001698 ORTHO05D001805 6.4e-06 55.1 116 37.9
MD14G1086600 Malus domestica HOM05D001698 ORTHO05D001805 6.4e-06 55.1 131 35.9
AUR62030326 Chenopodium quinoa HOM05D001698 ORTHO05D001805 8.4e-06 54.7 136 33.1
COL.COLO4_07589 Corchorus olitorius HOM05D001698 ORTHO05D001805 8.4e-06 54.7 144 32.6
Sopen10g030300 Solanum pennellii HOM05D003266 ORTHO05D003718 8.4e-06 54.7 202 31.7


User provided reference genes

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