Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 2.3e-174 615.5 332 100.0
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 5.2e-174 614.4 332 97.6
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 2.6e-141 505.8 332 80.7
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 3.8e-140 501.9 333 80.2
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 3.5e-138 495.4 332 78.3
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 6.6e-137 491.1 319 80.3
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 1.1e-136 490.3 320 80.9
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 3.3e-136 488.8 321 81.3
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 3.3e-136 488.8 332 78.6
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 4.3e-128 461.8 319 76.2
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 3.4e-125 452.2 307 75.9
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 2.2e-124 449.5 316 73.7
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 1.4e-123 446.8 318 73.6
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 4.2e-123 445.3 315 74.0
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 7.1e-123 444.5 331 71.9
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 3.5e-122 442.2 311 76.5
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 6.7e-121 438.0 322 72.0
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 8.7e-121 437.6 331 71.0
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 1.1e-120 437.2 332 70.8
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.5e-120 436.8 322 71.4
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.5e-120 436.0 322 71.7
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 3.7e-119 432.2 322 71.7
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 4.8e-119 431.8 301 74.8
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 8.2e-119 431.0 319 71.8
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 1.4e-118 430.3 326 70.2
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 2.4e-118 429.5 322 70.2
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 3.1e-118 429.1 312 72.8
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 9.0e-118 427.6 319 72.4
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 2.0e-117 426.4 305 73.1
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 2.6e-117 426.0 321 70.7
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.8e-117 424.9 323 70.6
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 1.0e-116 424.1 322 70.5
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.7e-116 423.3 313 71.2
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 2.2e-116 422.9 313 71.2
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.2e-116 422.9 313 71.2
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.2e-116 422.9 313 71.2
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 2.9e-116 422.5 317 73.2
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 8.4e-116 421.0 317 70.0
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.1e-115 420.6 313 70.9
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.9e-115 419.9 319 69.6
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 4.2e-115 418.7 331 69.5
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 7.1e-115 417.9 311 71.1
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.2e-114 417.2 319 69.6
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 7.9e-114 414.5 320 68.4
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 7.9e-114 414.5 325 66.8
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 1.0e-113 414.1 333 68.2
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 1.8e-113 413.3 320 66.9
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 2.3e-113 412.9 292 72.6
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 3.0e-113 412.5 304 70.4
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 3.9e-113 412.1 321 69.5
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 5.1e-113 411.8 320 66.6
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 6.7e-113 411.4 307 69.4
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 6.7e-113 411.4 315 69.8
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 8.7e-113 411.0 320 67.2
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 3.3e-112 409.1 320 66.2
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 7.4e-112 407.9 320 66.2
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 2.2e-111 406.4 288 74.0
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 2.8e-111 406.0 291 72.2
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 6.3e-111 404.8 312 68.6
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 1.1e-110 404.1 295 70.2
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 9.0e-110 401.0 286 73.8
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 9.0e-110 401.0 313 69.3
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 9.0e-110 401.0 331 65.9
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 2.0e-109 399.8 307 68.4
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 3.4e-109 399.1 320 67.8
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 4.5e-109 398.7 311 67.5
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 2.2e-108 396.4 294 70.4
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 2.2e-108 396.4 304 69.4
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 3.8e-108 395.6 287 71.4
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 5.0e-108 395.2 287 70.0
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 1.1e-107 394.0 315 67.6
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 1.4e-107 393.7 315 67.0
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 4.2e-107 392.1 324 64.5
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 9.3e-107 391.0 286 69.9
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 1.2e-106 390.6 310 67.1
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 1.6e-106 390.2 339 63.4
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 2.7e-106 389.4 310 65.5
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 2.7e-106 389.4 330 63.9
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 6.1e-106 388.3 339 65.8
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 6.1e-106 388.3 342 62.9
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 7.9e-106 387.9 294 68.7
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 1.0e-105 387.5 297 69.0
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 1.8e-105 386.7 329 63.8
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 1.8e-105 386.7 320 64.1
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 3.9e-105 385.6 335 62.7
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 5.1e-105 385.2 318 65.4
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 1.1e-104 384.0 313 64.2
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 2.5e-104 382.9 330 61.2
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 4.8e-103 378.6 319 63.0
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 8.2e-103 377.9 306 68.3
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 1.8e-102 376.7 308 64.9
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 3.1e-102 375.9 374 58.0
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 1.2e-101 374.0 309 65.0
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 4.5e-101 372.1 292 68.2
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 5.9e-101 371.7 314 65.3
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 1.3e-100 370.5 315 63.2
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 2.2e-100 369.8 311 64.3
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 2.2e-100 369.8 314 64.3
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 2.9e-100 369.4 311 64.3
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 3.8e-100 369.0 392 54.3
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 8.5e-100 367.9 262 72.1
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 1.4e-99 367.1 308 64.3
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 4.2e-99 365.5 304 64.1
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 4.2e-99 365.5 304 64.1
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 2.1e-98 363.2 304 63.5
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 2.1e-98 363.2 339 62.2
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 3.6e-98 362.5 304 63.5
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 3.6e-98 362.5 304 63.5
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 3.6e-98 362.5 333 60.7
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 4.7e-98 362.1 304 63.5
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 5.1e-97 358.6 303 63.4
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 5.1e-97 358.6 303 63.7
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 1.1e-96 357.5 394 51.3
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 1.5e-96 357.1 315 61.3
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 4.4e-96 355.5 303 63.4
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 5.7e-96 355.1 303 62.7
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 1.7e-95 353.6 303 63.0
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 1.7e-95 353.6 285 62.5
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 2.8e-95 352.8 309 62.1
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 4.8e-95 352.1 377 56.0
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 1.1e-94 350.9 309 62.1
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 1.4e-94 350.5 304 62.5
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 2.6e-93 346.3 307 61.6
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 7.7e-93 344.7 322 59.3
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 7.7e-93 344.7 304 61.8
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 4.4e-88 328.9 315 58.7
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 8.2e-87 324.7 290 58.6
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 7.0e-86 321.6 317 57.7
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 1.4e-78 297.4 290 56.6
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 7.0e-78 295.0 295 55.6
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 7.0e-78 295.0 309 56.0
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 3.8e-76 289.3 310 52.6
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 3.2e-75 286.2 303 55.8
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 1.4e-73 280.8 308 55.5
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 3.0e-73 279.6 247 59.5
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 2.6e-72 276.6 230 64.8
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 1.0e-65 254.6 313 48.9
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 9.8e-64 248.1 265 53.6
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 2.2e-63 246.9 325 47.4
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 6.3e-63 245.4 290 48.6
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 3.8e-60 236.1 250 56.0
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 1.5e-59 234.2 214 61.7
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 8.0e-58 228.4 167 69.5
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 3.7e-55 219.5 184 65.8
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 4.9e-55 219.2 189 63.0
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 8.0e-50 201.8 135 77.8
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 1.1e-46 191.4 150 64.7
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 3.2e-46 189.9 174 60.9
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 2.1e-45 187.2 170 61.2
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 2.2e-39 167.2 303 39.6
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 3.9e-36 156.4 161 60.9
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 8.1e-34 148.7 151 58.3
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 2.0e-32 144.1 344 36.9
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 3.8e-31 139.8 101 70.3
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 7.8e-29 132.1 132 56.8
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 5.1e-28 129.4 309 34.3
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 3.9e-20 103.2 79 62.0
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 3.3e-19 100.1 99 56.6
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 1.3e-18 98.2 90 56.7
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 9.0e-17 92.0 89 53.9
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 2.6e-16 90.5 73 60.3
Glyma.20G228801 Glycine max HOM05D004156 ORTHO05D211242 7.1e-14 82.4 79 63.3
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 9.3e-14 82.0 61 67.2
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 4.0e-09 66.6 38 89.5
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 1.2e-08 65.1 50 58.0
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 2.0e-08 64.3 57 54.4
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 4.9e-07 59.7 43 67.4
TAR626G1412 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.1e-06 58.5 101 41.6


User provided reference genes

Program Settings