Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 6.8e-115 417.5 243 100.0
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 6.8e-115 417.5 243 100.0
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 2.0e-114 416.0 243 98.8
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 5.1e-110 401.4 235 97.9
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 4.9e-97 358.2 242 80.2
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 7.1e-96 354.4 241 85.5
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 1.1e-93 347.1 241 85.1
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 1.5e-93 346.7 239 84.9
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 1.5e-93 346.7 241 86.3
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 7.3e-93 344.4 241 85.9
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 1.6e-92 343.2 239 85.8
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 3.6e-92 342.0 239 83.3
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 4.8e-92 341.7 241 83.4
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 8.1e-92 340.9 239 84.1
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 1.8e-91 339.7 241 81.7
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 4.0e-91 338.6 239 79.9
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 4.0e-91 338.6 241 74.7
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 1.5e-90 336.7 241 82.6
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 2.0e-90 336.3 239 83.7
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 2.6e-90 335.9 239 79.5
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 2.6e-90 335.9 241 80.1
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 5.8e-90 334.7 241 80.5
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 5.8e-90 334.7 237 74.7
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 1.3e-89 333.6 241 80.1
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 2.2e-89 332.8 239 73.6
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 3.8e-89 332.0 241 80.1
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 3.8e-89 332.0 239 81.6
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 6.4e-89 331.3 241 80.9
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 1.1e-88 330.5 239 80.8
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 1.1e-88 330.5 241 79.7
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 1.1e-88 330.5 239 82.8
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 1.1e-88 330.5 241 80.1
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 1.4e-88 330.1 243 83.5
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.4e-88 330.1 241 79.7
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 1.9e-88 329.7 240 78.3
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 3.2e-88 328.9 241 78.8
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 4.2e-88 328.6 239 80.3
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 5.4e-88 328.2 240 72.5
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 9.3e-88 327.4 239 81.2
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 2.1e-87 326.2 241 79.7
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.1e-87 326.2 242 71.5
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 2.7e-87 325.9 241 76.3
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 2.7e-87 325.9 239 72.0
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 2.7e-87 325.9 241 72.6
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 2.7e-87 325.9 242 74.8
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 3.5e-87 325.5 240 72.9
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 1.0e-86 323.9 240 72.5
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.0e-86 323.9 239 71.5
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.3e-86 323.6 239 71.1
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 1.3e-86 323.6 239 72.8
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.3e-86 323.6 242 75.2
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 1.3e-86 323.6 239 72.4
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.3e-86 322.8 239 71.1
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 5.1e-86 321.6 204 80.4
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 6.7e-86 321.2 249 70.7
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 8.7e-86 320.9 242 74.0
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 1.1e-85 320.5 242 74.0
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 1.9e-85 319.7 241 78.0
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 4.3e-85 318.5 239 70.7
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 5.6e-85 318.2 241 78.8
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 5.6e-85 318.2 243 76.5
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 7.4e-85 317.8 242 74.4
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 9.6e-85 317.4 242 74.0
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 6.2e-84 314.7 228 79.4
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.1e-83 313.9 241 67.6
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 1.4e-83 313.5 228 82.0
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 1.8e-83 313.2 245 70.6
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 2.4e-83 312.8 240 71.7
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 2.4e-83 312.8 241 77.6
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 4.0e-83 312.0 202 80.2
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 5.3e-83 311.6 241 75.9
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 9.0e-83 310.8 243 74.9
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 9.0e-83 310.8 200 81.5
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 2.0e-82 309.7 239 76.6
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 2.6e-82 309.3 241 72.2
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 3.4e-82 308.9 241 67.6
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 4.5e-82 308.5 242 70.7
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 4.5e-82 308.5 242 70.7
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 2.9e-81 305.8 240 75.0
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 4.9e-81 305.1 241 75.1
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 4.9e-81 305.1 205 76.6
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 6.4e-81 304.7 240 68.3
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 6.4e-81 304.7 241 71.0
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 8.4e-81 304.3 195 81.5
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.4e-80 303.5 241 73.4
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.9e-80 303.1 241 71.0
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 2.5e-80 302.8 208 76.0
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 3.2e-80 302.4 204 77.0
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 4.2e-80 302.0 199 78.9
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 5.5e-80 301.6 245 65.7
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 5.5e-80 301.6 241 73.9
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 1.6e-79 300.1 241 74.7
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 2.1e-79 299.7 204 77.0
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.3e-78 297.0 242 72.3
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.8e-78 296.6 241 66.4
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 1.1e-77 293.9 241 65.6
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.5e-77 293.5 241 67.2
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 5.6e-77 291.6 210 81.9
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 9.6e-77 290.8 229 73.4
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 1.6e-76 290.0 242 71.9
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 3.7e-76 288.9 242 71.1
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 6.2e-76 288.1 202 75.7
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 8.2e-76 287.7 241 65.1
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 1.1e-75 287.3 202 75.2
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 3.1e-75 285.8 206 73.8
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 5.8e-74 281.6 230 69.6
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 7.6e-74 281.2 242 69.8
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 6.5e-73 278.1 207 68.6
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 6.5e-73 278.1 207 68.6
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 8.4e-73 277.7 207 69.6
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 1.4e-72 276.9 207 69.1
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 1.4e-72 276.9 207 68.6
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 1.4e-72 276.9 207 68.6
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 1.9e-72 276.6 207 70.0
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 1.9e-72 276.6 207 69.6
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.2e-71 273.9 207 68.6
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 2.1e-71 273.1 183 75.4
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 3.5e-71 272.3 243 66.3
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 3.5e-71 272.3 207 69.1
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 4.6e-71 271.9 242 67.4
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 4.5e-66 255.4 239 56.5
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 5.9e-66 255.0 193 69.9
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 2.2e-65 253.1 179 72.6
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 2.9e-65 252.7 193 67.4
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 8.2e-60 234.6 193 63.7
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 3.2e-56 222.6 159 72.3
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 1.2e-55 220.7 206 61.7
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 7.9e-55 218.0 243 53.1
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 4.4e-53 212.2 192 59.4
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 3.2e-48 196.1 169 64.5
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 3.3e-45 186.0 133 72.2
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 1.4e-43 180.6 111 79.3
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 9.4e-40 167.9 206 52.9
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 1.2e-37 161.0 102 77.5
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 4.8e-36 155.6 177 49.2
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 7.7e-34 148.3 174 48.3
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 4.4e-29 132.5 185 40.0
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 1.2e-26 124.4 129 55.8
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 5.5e-24 115.5 87 64.4
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 2.9e-17 93.2 183 33.9
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 2.5e-16 90.1 89 67.4
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 1.2e-15 87.8 60 70.0
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 1.0e-14 84.7 88 56.8
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 1.7e-12 77.4 180 31.1
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 1.4e-06 57.8 81 45.7


User provided reference genes

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