Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.EHS3F0 Arachis hypogaea HOM05D002578 ORTHO05D005154 1.0e-66 256.5 126 100.0
BNapus_Darmor_BZH_scaffold_253p00370 Brassica napus HOM05D002578 ORTHO05D005154 7.5e-57 223.8 142 78.9
C03p38130 Brassica napus HOM05D002578 ORTHO05D005154 7.5e-57 223.8 142 78.9
BolSC29t60532H Brassica oleracea HOM05D002578 ORTHO05D005154 7.5e-57 223.8 142 78.9
BolSC56t61245H Brassica oleracea HOM05D002578 ORTHO05D005154 7.5e-57 223.8 142 78.9
BraA06t25386Z Brassica rapa HOM05D002578 ORTHO05D005154 7.5e-57 223.8 142 78.9
BraSC103t45443Z Brassica rapa HOM05D002578 ORTHO05D005154 7.5e-57 223.8 142 78.9
BraSC103t45487Z Brassica rapa HOM05D002578 ORTHO05D005154 7.5e-57 223.8 142 78.9
BraSC138t45551Z Brassica rapa HOM05D002578 ORTHO05D005154 7.5e-57 223.8 142 78.9
BraSC59t46568Z Brassica rapa HOM05D002578 ORTHO05D005154 7.5e-57 223.8 142 78.9
ATCG00800 Arabidopsis thaliana HOM05D002578 ORTHO05D005154 1.1e-55 219.9 142 77.5
CARHR282270 Cardamine hirsuta HOM05D002578 ORTHO05D005154 1.1e-55 219.9 142 77.5
BolSC35t60726H Brassica oleracea HOM05D002578 ORTHO05D005154 1.4e-55 219.5 143 76.9
DCAR_032524 Daucus carota HOM05D002578 ORTHO05D005154 9.2e-55 216.9 142 76.8
Hma1.2p1_0104F.1_g050140 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 9.2e-55 216.9 142 76.8
Hma1.2p1_0298F.1_g117740 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 9.2e-55 216.9 142 76.8
Hma1.2p1_0818F.1_g223306 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 9.2e-55 216.9 142 76.8
AL2G20530 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 1.2e-54 216.5 139 77.7
Gohir.1Z049834 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.2e-54 216.5 142 75.4
Gohir.D11G067600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.2e-54 216.5 142 75.4
PGR111G0034 Punica granatum HOM05D002578 ORTHO05D005154 1.2e-54 216.5 142 75.4
LjContig00318g0021445 Lotus japonicus HOM05D002578 ORTHO05D005154 1.6e-54 216.1 142 78.2
LjContig00319g0008344 Lotus japonicus HOM05D002578 ORTHO05D005154 1.6e-54 216.1 142 78.2
LjContig00319g0015839 Lotus japonicus HOM05D002578 ORTHO05D005154 1.6e-54 216.1 142 78.2
Gohir.A09G101600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.0e-54 215.7 142 75.4
AL1G45070 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 3.5e-54 214.9 139 77.0
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 3.5e-54 214.9 142 74.6
Gohir.D01G102164 Gossypium hirsutum HOM05D002578 ORTHO05D005154 5.9e-54 214.2 142 73.9
SalBow1G1132 Salvia bowleyana HOM05D002578 ORTHO05D005154 5.9e-54 214.2 141 76.6
CAN.G424.95 Capsicum annuum HOM05D002578 ORTHO05D005154 7.8e-54 213.8 142 74.6
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 1.0e-53 213.4 142 75.4
TAR375G1061 Trochodendron aralioides HOM05D002578 ORTHO05D005154 1.0e-53 213.4 142 76.1
CSS0047935 Camellia sinensis var. sinensis HOM05D002578 ORTHO05D005154 2.3e-53 212.2 142 75.4
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 2.3e-53 212.2 142 73.9
Thhalv10010706m.g Eutrema salsugineum HOM05D002578 ORTHO05D005154 2.9e-53 211.8 142 75.4
QL93p1043_0025 Quercus lobata HOM05D002578 ORTHO05D005154 3.9e-53 211.5 143 74.1
Cpa.g.sc0.194 Carica papaya HOM05D002578 ORTHO05D005154 5.0e-53 211.1 142 75.4
HanXRQChr00c0557g0575711 Helianthus annuus HOM05D002578 ORTHO05D005154 5.0e-53 211.1 142 76.1
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 5.0e-53 211.1 142 76.1
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 5.0e-53 211.1 142 76.1
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 5.0e-53 211.1 142 76.1
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 5.0e-53 211.1 142 76.1
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 1.5e-52 209.5 139 74.1
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 1.5e-52 209.5 139 74.1
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 1.5e-52 209.5 139 74.1
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 1.5e-52 209.5 139 74.1
Sed0004436 Sechium edule HOM05D002578 ORTHO05D005154 2.5e-52 208.8 141 75.2
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 3.3e-52 208.4 138 76.8
PSO548G0101 Papaver somniferum HOM05D002578 ORTHO05D005154 3.3e-52 208.4 142 75.4
Sed0023475 Sechium edule HOM05D002578 ORTHO05D005154 3.3e-52 208.4 142 74.6
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 4.3e-52 208.0 142 71.8
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 5.6e-52 207.6 142 74.6
arahy.Tifrunner.gnm1.ann1.I6CLRS Arachis hypogaea HOM05D002578 ORTHO05D005154 1.2e-49 199.9 142 75.4
Gohir.A08G071000 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.5e-49 199.5 142 71.8
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 4.4e-49 198.0 142 71.8
CAN.G127.12 Capsicum annuum HOM05D002578 ORTHO05D005154 2.2e-48 195.7 142 67.6
Gohir.A12G090125 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.1e-47 191.4 128 74.2
ATR0306G002 Amborella trichopoda HOM05D002578 ORTHO05D005154 9.2e-47 190.3 128 74.2
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 1.6e-46 189.5 128 75.8
MELO3C004853.2 Cucumis melo HOM05D002578 ORTHO05D005154 1.0e-45 186.8 128 75.8
Hund28761 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.0e-45 186.8 142 65.5
Lsat_1_v5_gn_5_50461 Lactuca sativa HOM05D002578 ORTHO05D005154 8.6e-45 183.7 133 70.7
Sc09g0006250 Simmondsia chinensis HOM05D002578 ORTHO05D005154 1.1e-44 183.3 141 66.0
HanXRQChr00c0593g0576401 Helianthus annuus HOM05D002578 ORTHO05D005154 1.5e-44 183.0 123 76.4
Hund29530 Selenicereus undatus HOM05D002578 ORTHO05D005154 2.5e-44 182.2 129 69.0
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 1.6e-43 179.5 124 73.4
Nitab4.5_0004430g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 8.9e-42 173.7 142 64.1
Sc16g0004460 Simmondsia chinensis HOM05D002578 ORTHO05D005154 1.5e-41 172.9 123 70.7
Gohir.A02G112702 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.6e-41 172.2 113 75.2
Psat4g046880 Pisum sativum HOM05D002578 ORTHO05D005154 2.6e-41 172.2 143 62.9
Hund08206 Selenicereus undatus HOM05D002578 ORTHO05D005154 2.6e-41 172.2 130 66.2
Gorai.011G034100 Gossypium raimondii HOM05D002578 ORTHO05D005154 9.8e-41 170.2 117 73.5
Psat5g168200 Pisum sativum HOM05D002578 ORTHO05D005154 2.9e-40 168.7 143 61.5
Lj2P1237T124 Lonicera japonica HOM05D002578 ORTHO05D005154 1.1e-39 166.8 123 69.9
Lj2P1239T79 Lonicera japonica HOM05D002578 ORTHO05D005154 1.1e-39 166.8 123 69.9
Lju5009P0T57 Lonicera japonica HOM05D002578 ORTHO05D005154 1.1e-39 166.8 123 69.9
Lalb_Chr23g0274261 Lupinus albus HOM05D002578 ORTHO05D005154 9.2e-39 163.7 129 67.4
Solyc09g050066.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 9.2e-39 163.7 118 73.7
Gohir.D06G105066 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.1e-38 162.5 118 68.6
Solyc00g500153.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 1.7e-37 159.5 108 75.0
Ah.10g027320 Amaranthus hybridus HOM05D002578 ORTHO05D005154 2.3e-37 159.1 115 69.6
Zm00001eb039190 Zea mays HOM05D002578 ORTHO05D005154 5.1e-37 157.9 142 56.3
Zm00001eb097380 Zea mays HOM05D002578 ORTHO05D005154 5.1e-37 157.9 142 56.3
Medtr0002s0790 Medicago truncatula HOM05D002578 ORTHO05D005154 1.6e-35 152.9 142 53.5
Psat3g190920 Pisum sativum HOM05D002578 ORTHO05D005154 2.1e-35 152.5 194 46.4
Hund30213 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.4e-34 149.8 142 55.6
Lsat_1_v5_gn_5_168120 Lactuca sativa HOM05D002578 ORTHO05D005154 1.8e-34 149.4 122 63.9
Eucgr.E01404 Eucalyptus grandis HOM05D002578 ORTHO05D005154 6.8e-34 147.5 104 70.2
Hund07448 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.5e-33 146.4 101 69.3
Eucgr.C03015 Eucalyptus grandis HOM05D002578 ORTHO05D005154 3.4e-33 145.2 119 58.8
Hund29503 Selenicereus undatus HOM05D002578 ORTHO05D005154 3.4e-33 145.2 126 60.3
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 9.2e-31 137.1 104 67.3
arahy.Tifrunner.gnm1.ann1.YJ6L74 Arachis hypogaea HOM05D002578 ORTHO05D005154 2.7e-30 135.6 94 74.5
Gorai.010G148900 Gossypium raimondii HOM05D002578 ORTHO05D005154 2.7e-30 135.6 102 66.7
Gorai.012G056700 Gossypium raimondii HOM05D002578 ORTHO05D005154 2.3e-29 132.5 100 65.0
Lalb_Chr13g0292561 Lupinus albus HOM05D002578 ORTHO05D005154 3.0e-29 132.1 96 67.7
Gohir.A12G024500 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.9e-28 129.4 96 66.7
Gohir.D04G051050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.3e-28 128.3 100 63.0
Migut.D01324 Erythranthe guttata HOM05D002578 ORTHO05D005154 9.6e-28 127.1 69 85.5
RcHm_v2.0_Chr2g0118541 Rosa chinensis HOM05D002578 ORTHO05D005154 1.2e-27 126.7 70 84.3
HanXRQChr05g0152541 Helianthus annuus HOM05D002578 ORTHO05D005154 1.6e-27 126.3 70 85.7
HanXRQChr11g0327001 Helianthus annuus HOM05D002578 ORTHO05D005154 1.6e-27 126.3 70 85.7
Nn1g08404 Nelumbo nucifera HOM05D002578 ORTHO05D005154 4.7e-27 124.8 70 81.4
Gohir.D09G093200 Gossypium hirsutum HOM05D002578 ORTHO05D005154 5.2e-26 121.3 70 80.0
MD14G1153600 Malus domestica HOM05D002578 ORTHO05D005154 6.8e-26 120.9 70 80.0
CsaV3_4G010600 Cucumis sativus L. HOM05D002578 ORTHO05D005154 1.2e-25 120.2 70 78.6
TWI14G1004 Tripterygium wilfordii HOM05D002578 ORTHO05D005154 1.5e-25 119.8 70 80.0
Gohir.A09G103050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.0e-25 119.4 70 78.6
arahy.Tifrunner.gnm1.ann1.R0YUWC Arachis hypogaea HOM05D002578 ORTHO05D005154 2.6e-25 119.0 61 96.7
SEGI_06953 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 2.6e-25 119.0 125 50.4
SEGI_26563 Sequoiadendron giganteum HOM05D000540 ORTHO05D002320 2.6e-25 119.0 125 50.4
SEGI_30011 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 2.6e-25 119.0 125 50.4
SEGI_35211 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 2.6e-25 119.0 125 50.4
SEGI_36364 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.6e-25 119.0 125 50.4
SEGI_41075 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 2.6e-25 119.0 125 50.4
AL2G21750 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 4.4e-25 118.2 87 71.3
Medtr8g038470 Medicago truncatula HOM05D002578 ORTHO05D005154 7.6e-25 117.5 114 57.0
SEGI_07135 Sequoiadendron giganteum HOM05D000890 ORTHO05D000697 9.9e-25 117.1 125 49.6
SEGI_06984 Sequoiadendron giganteum HOM05D002578 ORTHO05D005154 1.7e-24 116.3 130 49.2
SEGI_32412 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 2.2e-24 115.9 125 48.8
HanXRQChr11g0321131 Helianthus annuus HOM05D002578 ORTHO05D005154 1.9e-23 112.8 85 70.6
Potri.002G235600 Populus trichocarpa HOM05D002578 ORTHO05D005154 2.1e-22 109.4 70 70.0
SEGI_12372 Sequoiadendron giganteum HOM05D000445 ORTHO05D005154 2.1e-22 109.4 113 49.6
Ciclev10006396m.g Citrus clementina HOM05D002578 ORTHO05D005154 6.0e-22 107.8 61 82.0
arahy.Tifrunner.gnm1.ann1.ID3W56 Arachis hypogaea HOM05D002578 ORTHO05D005154 1.7e-21 106.3 70 75.7
Potri.017G072340 Populus trichocarpa HOM05D002578 ORTHO05D005154 8.7e-21 104.0 86 60.5
AL5G19940 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 1.1e-20 103.6 79 69.6
Eucgr.F03422 Eucalyptus grandis HOM05D002578 ORTHO05D005154 4.3e-20 101.7 100 53.0
Lalb_Chr17g0337521 Lupinus albus HOM05D002578 ORTHO05D005154 4.3e-20 101.7 91 62.6
SMO086G0021 Selaginella moellendorffii HOM05D002578 ORTHO05D005154 1.6e-19 99.8 136 44.1
Lj2A1234G110 Lonicera japonica HOM05D002578 ORTHO05D005154 2.1e-19 99.4 56 82.1
SEGI_32821 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 6.2e-19 97.8 92 54.3
Nn4g25225 Nelumbo nucifera HOM05D002578 ORTHO05D005154 1.1e-18 97.1 61 77.0
Nitab4.5_0001339g0110 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.8e-18 96.3 81 56.8
Psat6g181640 Pisum sativum HOM05D002578 ORTHO05D005154 2.4e-18 95.9 56 78.6
CiPaw.10G131300 Carya illinoinensis HOM05D002578 ORTHO05D005154 3.1e-18 95.5 93 57.0
Oeu062830.1 Olea europaea HOM05D002578 ORTHO05D005154 2.0e-17 92.8 61 72.1
HanXRQChr14g0432301 Helianthus annuus HOM05D002578 ORTHO05D005154 5.8e-17 91.3 57 77.2
Zm00001eb437960 Zea mays HOM05D002578 ORTHO05D005154 1.9e-15 86.3 96 50.0
Lsat_1_v5_gn_3_113300 Lactuca sativa HOM05D002578 ORTHO05D005154 2.1e-14 82.8 56 73.2
Zm00001eb434870 Zea mays HOM05D002578 ORTHO05D005154 7.9e-14 80.9 93 48.4
Zm00001eb435640 Zea mays HOM05D002578 ORTHO05D005154 7.9e-14 80.9 93 48.4
Zm00001eb439940 Zea mays HOM05D002578 ORTHO05D005154 7.9e-14 80.9 93 48.4
Zm00001eb439960 Zea mays HOM05D002578 ORTHO05D005154 7.9e-14 80.9 93 48.4
Zm00001eb440780 Zea mays HOM05D002578 ORTHO05D005154 7.9e-14 80.9 93 48.4
Eucgr.L01887 Eucalyptus grandis HOM05D002578 ORTHO05D005154 3.0e-13 79.0 64 65.6
Eucgr.A01255 Eucalyptus grandis HOM05D002578 ORTHO05D002698 2.5e-12 75.9 44 79.5
Hund18006 Selenicereus undatus HOM05D002578 ORTHO05D005154 4.8e-11 71.6 66 57.6
Zm00001eb115040 Zea mays HOM05D002578 ORTHO05D005154 4.8e-11 71.6 61 59.0
CsaV3_5G013710 Cucumis sativus L. HOM05D007755 ORTHO05D009866 6.2e-11 71.2 42 78.6
Sc25g0002540 Simmondsia chinensis HOM05D002578 ORTHO05D001488 1.8e-10 69.7 52 61.5
Mapoly0015s0207 Marchantia polymorpha HOM05D002578 ORTHO05D005154 1.2e-09 67.0 90 41.1
CANSAT16G0046 Cannabis sativa HOM05D001987 ORTHO05D006514 1.3e-08 63.5 113 32.7
Eucgr.H02719 Eucalyptus grandis HOM05D001987 ORTHO05D006514 2.2e-08 62.8 119 31.1
arahy.Tifrunner.gnm1.ann1.8UR9GU Arachis hypogaea HOM05D001987 ORTHO05D006514 3.8e-08 62.0 119 31.1
arahy.Tifrunner.gnm1.ann1.K88Y93 Arachis hypogaea HOM05D001987 ORTHO05D006514 3.8e-08 62.0 119 31.1
arahy.Tifrunner.gnm1.ann1.TY26DT Arachis hypogaea HOM05D001987 ORTHO05D006514 3.8e-08 62.0 119 31.1
Nitab4.5_0005412g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.1e-07 60.5 34 79.4
Hund28418 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.4e-07 60.1 62 43.5
Hund29734 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.4e-07 60.1 62 43.5
Hund29823 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.4e-07 60.1 62 43.5
Hund30343 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.4e-07 60.1 62 43.5
Hund30419 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.4e-07 60.1 62 43.5
PSO541G5803 Papaver somniferum HOM05D001987 ORTHO05D006514 1.9e-07 59.7 106 34.0
PSO675G5335 Papaver somniferum HOM05D001987 ORTHO05D006514 1.9e-07 59.7 106 34.0
Zm00001eb435100 Zea mays HOM05D002578 ORTHO05D005154 1.9e-07 59.7 52 57.7
SEGI_09039 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 3.2e-07 58.9 87 40.2
SEGI_13221 Sequoiadendron giganteum HOM05D000540 ORTHO05D004018 4.2e-07 58.5 128 34.4
SEGI_36078 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 5.5e-07 58.2 92 39.1
Sc17g0003730 Simmondsia chinensis HOM05D001987 ORTHO05D006514 5.5e-07 58.2 61 44.3
TPR.G26049 Trifolium pratense HOM05D001987 ORTHO05D006514 7.1e-07 57.8 119 30.3
SEGI_31371 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 1.2e-06 57.0 87 40.2
Ah.10g028690 Amaranthus hybridus HOM05D001987 ORTHO05D006514 2.1e-06 56.2 56 42.9
Hma1.2p1_0105F.1_g050680 Hydrangea macrophylla HOM05D001987 ORTHO05D006514 2.7e-06 55.8 114 30.7
AagrBONN_evm.TU.Sc2ySwM_362.2082 Anthoceros agrestis HOM05D001987 ORTHO05D006514 3.5e-06 55.5 64 43.8
LjContig00315g0000313 Lotus japonicus HOM05D001987 ORTHO05D006514 3.5e-06 55.5 114 30.7
Solyc00g500100.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.5e-06 55.5 126 28.6
Solyc00g500117.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.5e-06 55.5 126 28.6
Solyc00g500274.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.5e-06 55.5 126 28.6
Solyc00g500309.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 4.6e-06 55.1 126 28.6
Peaxi162Scf01098g00013 Petunia axillaris HOM05D001987 ORTHO05D006514 6.0e-06 54.7 114 29.8
DCAR_032448 Daucus carota HOM05D001987 ORTHO05D006514 7.9e-06 54.3 136 26.5


User provided reference genes

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