Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 0.0e+00 1384.8 700 100.0
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 0.0e+00 1378.2 700 99.6
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 1.4e-298 1029.2 708 75.1
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 5.4e-298 1027.3 702 75.5
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 4.3e-295 1017.7 703 75.4
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 1.1e-290 1003.0 703 74.4
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 2.1e-289 998.8 702 74.6
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 8.1e-286 986.9 710 73.2
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 7.1e-282 973.8 703 73.7
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 7.1e-282 973.8 707 72.4
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 5.8e-276 954.1 708 70.6
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 1.0e-275 953.4 706 71.7
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 9.3e-274 946.8 704 70.3
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 7.2e-266 920.6 710 68.0
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 1.3e-262 909.8 705 67.9
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 1.8e-261 906.0 703 68.0
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 2.6e-260 902.1 704 66.8
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 3.2e-258 895.2 702 68.2
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 5.5e-258 894.4 699 67.4
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 6.7e-256 887.5 704 66.6
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 2.0e-255 885.9 704 66.5
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 9.7e-255 883.6 699 67.5
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 3.4e-252 875.2 715 65.7
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 5.9e-252 874.4 723 63.9
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 5.5e-250 867.8 713 64.4
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 4.7e-249 864.8 717 64.2
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 7.9e-249 864.0 704 64.9
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 3.0e-248 862.1 702 64.7
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 1.5e-247 859.8 712 65.0
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 3.3e-247 858.6 706 65.7
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 4.8e-246 854.7 708 63.8
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 1.1e-245 853.6 707 64.8
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 1.1e-245 853.6 707 64.4
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 7.0e-245 850.9 695 63.9
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 1.6e-244 849.7 707 64.2
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 1.2e-241 840.1 697 62.8
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 1.6e-241 839.7 697 62.6
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 1.8e-240 836.3 705 63.4
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 4.0e-240 835.1 716 63.0
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 1.3e-238 830.1 721 61.9
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 2.8e-238 828.9 703 62.9
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 1.1e-237 827.0 697 61.3
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 9.1e-237 823.9 705 63.0
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 1.2e-236 823.5 697 62.1
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 1.0e-235 820.5 697 61.8
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 1.1e-234 817.0 697 62.6
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 2.5e-234 815.8 698 62.3
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 3.2e-234 815.5 569 74.3
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 1.4e-232 810.1 691 61.5
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 3.0e-232 808.9 703 61.0
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 3.0e-232 808.9 653 65.4
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 8.8e-232 807.4 708 61.2
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 2.8e-230 802.4 692 62.1
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 6.3e-230 801.2 702 61.7
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 3.1e-229 798.9 688 61.0
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 2.2e-227 792.7 702 60.7
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 1.6e-225 786.6 737 58.2
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 5.7e-223 778.1 713 59.5
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 2.8e-222 775.8 704 61.1
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 2.8e-222 775.8 709 60.2
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 7.0e-221 771.2 735 57.7
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 7.7e-220 767.7 544 72.8
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 2.3e-219 766.1 801 55.4
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 8.6e-219 764.2 707 60.5
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 1.1e-218 763.8 707 58.7
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 1.2e-215 753.8 700 58.6
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 1.5e-215 753.4 631 62.8
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 1.2e-212 743.8 665 61.2
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 3.5e-212 742.3 695 59.0
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 1.9e-210 736.5 719 55.6
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 5.8e-207 724.9 705 56.9
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 9.8e-207 724.2 704 57.8
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 3.3e-202 709.1 582 64.1
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 1.6e-201 706.8 706 57.9
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 1.7e-198 696.8 719 56.3
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 1.6e-196 690.3 545 66.1
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 4.3e-194 682.2 526 66.5
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 7.3e-194 681.4 504 70.2
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 3.4e-191 672.5 709 54.0
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 4.9e-190 668.7 539 66.6
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 1.1e-189 667.5 450 75.8
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 1.7e-182 643.7 697 51.4
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 1.0e-179 634.4 706 51.4
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 5.6e-178 628.6 726 48.5
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 7.3e-178 628.2 501 65.9
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 9.0e-176 621.3 719 51.2
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 3.5e-172 609.4 723 47.3
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 4.0e-160 569.3 404 72.3
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 1.0e-158 564.7 728 45.1
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 6.7e-147 525.4 492 57.9
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 1.5e-146 524.2 495 59.0
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 1.0e-131 474.9 360 68.6
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 5.2e-131 472.6 360 68.3
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 5.7e-130 469.2 357 67.5
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.3e-129 468.0 361 66.5
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 3.7e-129 466.5 417 58.0
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 4.5e-127 459.5 357 66.4
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 8.8e-123 445.3 758 38.0
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 2.4e-120 437.2 802 38.4
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 3.8e-118 429.9 370 60.3
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 6.5e-118 429.1 839 34.7
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 1.6e-111 407.9 716 38.4
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 3.7e-105 386.7 319 66.1
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 1.3e-97 361.7 345 54.8
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 1.8e-91 341.3 312 59.6
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 1.8e-91 341.3 325 56.6
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 5.8e-90 336.3 740 33.5
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 6.4e-73 279.6 237 62.4
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 1.3e-70 271.9 259 59.5
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 6.2e-68 263.1 320 47.5
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 4.0e-59 233.8 657 30.4
Zm00001eb281050 Zea mays HOM05D005810 ORTHO05D007279 9.0e-59 232.6 166 68.7
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 4.5e-58 230.3 199 61.3
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 2.2e-57 228.0 141 82.3
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 2.2e-57 228.0 171 70.8
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 6.4e-57 226.5 199 61.3
Zm00001eb054900 Zea mays HOM05D005810 ORTHO05D007279 3.5e-55 220.7 179 63.7
Nitab4.5_0005729g0070 Nicotiana tabacum HOM05D005810 ORTHO05D007279 4.6e-55 220.3 268 49.6
Cc02_g31840 Coffea canephora HOM05D005810 ORTHO05D007279 6.7e-46 189.9 203 52.7
HPP92_018612 Vanilla planifolia HOM05D005810 ORTHO05D007279 6.2e-44 183.3 181 54.7
Atru.chr2.785 Acer truncatum HOM05D005810 ORTHO05D007279 5.3e-43 180.3 154 58.4
FAN09G1409 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.1e-35 156.0 155 58.7
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 4.5e-34 150.6 133 59.4
ClCG06G009160 Citrullus lanatus HOM05D005810 ORTHO05D007279 5.3e-27 127.1 153 50.3
Hma1.2p1_0083F.1_g042850 Hydrangea macrophylla HOM05D005810 ORTHO05D007279 1.5e-26 125.6 141 53.9
CsaV3_UNG004060 Cucumis sativus L. HOM05D005810 ORTHO05D007279 2.5e-24 118.2 148 48.6
Sopen01g041220 Solanum pennellii HOM05D005810 ORTHO05D007279 2.5e-24 118.2 147 47.6
CsaV3_1G045610 Cucumis sativus L. HOM05D005810 ORTHO05D007279 8.2e-20 103.2 140 46.4
SHI07786 Sapria himalayana HOM05D005810 ORTHO05D007279 2.8e-12 78.2 54 68.5
MBI11_g02497_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 3.1e-11 74.7 77 57.1
Mapoly0081s0042 Marchantia polymorpha HOM05D005810 ORTHO05D007279 2.0e-10 72.0 51 62.7
Mapoly0027s0098 Marchantia polymorpha HOM05D005810 ORTHO05D007279 3.5e-10 71.2 76 50.0
CiPaw.07G064900 Carya illinoinensis HOM05D005810 ORTHO05D007279 1.5e-08 65.9 35 91.4


User provided reference genes

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