Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 0.0e+00 1992.6 1047 100.0
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 0.0e+00 1883.6 1058 95.2
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 0.0e+00 1237.6 945 72.5
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 0.0e+00 1204.5 953 70.5
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 0.0e+00 1203.0 951 70.6
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 0.0e+00 1167.1 945 69.6
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 0.0e+00 1163.3 951 68.3
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 0.0e+00 1081.2 951 63.9
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 0.0e+00 1078.5 943 65.0
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 0.0e+00 1078.2 950 64.4
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 5.2e-305 1051.2 941 63.5
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 3.0e-300 1035.4 954 61.6
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 2.4e-297 1025.8 947 61.0
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 8.4e-295 1017.3 981 58.8
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 1.5e-288 996.5 959 60.3
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 3.4e-288 995.3 993 58.2
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 4.6e-285 984.9 989 57.8
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 2.5e-283 979.2 944 60.5
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 5.6e-283 978.0 968 58.5
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 2.2e-279 966.1 960 58.8
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 1.0e-276 957.2 953 57.6
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 2.2e-274 949.5 957 57.9
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 1.0e-271 940.6 972 57.0
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 6.5e-271 937.9 964 57.0
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 1.9e-270 936.4 962 56.8
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 4.8e-266 921.8 961 56.1
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 2.4e-265 919.5 961 56.2
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 6.9e-265 917.9 959 55.6
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 5.0e-263 911.8 954 55.6
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 3.2e-262 909.1 873 60.5
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 1.2e-261 907.1 959 55.1
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 3.9e-260 902.1 959 55.6
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 3.9e-260 902.1 958 55.7
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 1.5e-259 900.2 959 55.7
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.5e-259 900.2 1016 53.6
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 4.4e-259 898.7 1020 53.1
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 5.7e-259 898.3 961 55.2
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 7.4e-259 897.9 961 55.0
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 9.7e-259 897.5 947 56.3
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 3.7e-258 895.6 962 55.8
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.1e-257 894.0 1022 52.8
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 4.1e-257 892.1 964 53.8
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 2.0e-256 889.8 955 55.0
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.9e-254 883.2 1022 52.5
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 5.5e-254 881.7 1035 52.8
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.6e-253 879.0 1045 51.8
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 2.0e-251 873.2 952 54.4
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 6.7e-244 848.2 959 52.8
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 1.5e-243 847.0 958 52.6
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 4.2e-238 828.9 930 53.5
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 7.2e-238 828.2 860 57.6
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 7.5e-235 818.1 1003 50.0
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 6.5e-231 805.1 871 55.8
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 1.1e-230 804.3 793 58.9
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 1.0e-228 797.7 1091 47.0
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 5.2e-228 795.4 902 53.3
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 9.5e-222 774.6 860 54.7
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 2.2e-218 763.5 960 49.1
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 2.2e-218 763.5 987 48.7
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 5.6e-214 748.8 960 48.0
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 1.1e-212 744.6 973 47.8
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 1.8e-212 743.8 960 48.0
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 1.2e-211 741.1 977 47.1
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 4.4e-211 739.2 1037 46.9
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 1.7e-210 737.3 955 47.9
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 1.9e-209 733.8 563 69.3
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 9.2e-209 731.5 952 46.8
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 2.1e-208 730.3 950 49.5
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 5.6e-206 722.2 537 70.2
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 5.6e-206 722.2 949 47.8
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 1.8e-204 717.2 954 47.1
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 2.3e-204 716.8 956 46.9
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 2.0e-203 713.8 1006 45.3
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 5.4e-201 705.7 958 45.3
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 1.3e-199 701.0 771 54.3
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 2.5e-198 696.8 843 50.4
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 8.1e-197 691.8 1039 45.6
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 1.3e-194 684.5 958 44.6
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 3.2e-193 679.9 799 51.7
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 2.8e-189 666.8 1001 42.6
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 9.0e-188 661.8 1000 42.8
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 1.9e-185 654.1 1044 41.5
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 1.2e-184 651.4 949 45.5
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 1.3e-183 647.9 956 43.7
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 1.3e-183 647.9 968 42.7
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.0e-179 634.0 935 44.8
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 4.5e-179 632.9 1004 41.9
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 1.3e-178 631.3 953 44.0
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 8.4e-178 628.6 549 64.3
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 7.9e-176 622.1 607 60.6
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 3.0e-175 620.2 940 43.3
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 3.3e-174 616.7 959 42.6
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 4.8e-173 612.8 953 42.5
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 1.1e-172 611.7 957 42.8
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 1.2e-171 608.2 947 42.4
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 2.2e-170 604.0 938 41.8
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 6.4e-170 602.4 976 41.8
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 4.6e-168 596.3 961 41.4
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 6.7e-167 592.4 951 41.7
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 1.5e-166 591.3 961 40.8
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 2.8e-165 587.0 966 40.0
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 3.7e-165 586.6 577 56.8
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 8.2e-165 585.5 966 40.0
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 1.8e-164 584.3 959 40.3
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 3.1e-164 583.6 976 40.1
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 4.0e-164 583.2 959 40.1
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 5.3e-164 582.8 959 40.1
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 2.2e-162 577.4 487 64.9
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 1.6e-160 571.2 961 40.5
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 2.2e-157 560.8 1012 39.3
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 2.3e-151 540.8 829 43.9
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 2.4e-140 504.2 942 36.9
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 3.5e-131 473.8 717 44.4
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 3.6e-128 463.8 1029 34.5
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 8.0e-128 462.6 954 36.4
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 3.3e-126 457.2 792 39.8
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 2.7e-123 447.6 551 47.7
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 7.2e-121 439.5 799 38.9
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 1.4e-119 435.3 369 63.4
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 1.3e-117 428.7 543 49.4
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 3.7e-117 427.2 820 37.8
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 5.4e-116 423.3 784 38.9
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 1.7e-114 418.3 318 69.8
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 5.5e-113 413.3 769 39.0
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 2.3e-111 407.9 540 45.7
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 5.7e-110 403.3 820 37.1
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 3.7e-109 400.6 1018 32.2
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 5.4e-108 396.7 1006 32.1
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 1.0e-106 392.5 330 64.8
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 8.6e-106 389.4 562 43.4
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 9.8e-102 375.9 553 43.2
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 3.4e-94 350.9 372 57.3
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 5.8e-94 350.1 356 58.7
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 2.2e-93 348.2 251 70.9
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 8.6e-90 336.3 1021 30.2
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.1e-87 329.3 1079 27.9
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 2.0e-86 325.1 623 39.2
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 5.8e-78 297.0 341 55.4
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 7.6e-78 296.6 282 56.4
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 5.6e-73 280.4 444 45.7
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.3e-69 269.2 268 55.6
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 8.4e-69 266.5 680 32.1
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 2.7e-67 261.5 480 41.2
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 2.1e-64 251.9 237 56.5
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 9.0e-55 219.9 337 43.6
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 2.9e-45 188.3 379 37.5
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.5e-44 185.3 186 55.4
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.2e-43 183.0 229 50.7
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 5.1e-42 177.6 277 47.7
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 6.7e-42 177.2 226 56.6
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 2.9e-37 161.8 328 38.7
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 8.5e-37 160.2 210 45.2
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 7.9e-35 153.7 568 28.0
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 1.0e-34 153.3 167 51.5
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 1.5e-33 149.4 176 47.7
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 2.0e-33 149.1 164 50.6
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 4.8e-32 144.4 143 53.1
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 2.0e-30 139.0 218 44.0
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 3.8e-29 134.8 102 70.6
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 5.5e-28 131.0 119 59.7
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 1.7e-24 119.4 185 41.6
Hma1.2p1_0358F.1_g134800 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.0e-22 112.5 151 44.4
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 3.5e-22 111.7 82 68.3
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 7.2e-20 104.0 126 48.4
CDE11G0573 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 4.7e-19 101.3 189 32.8
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 5.2e-18 97.8 77 64.9
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 8.8e-18 97.1 299 33.1
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 2.6e-17 95.5 147 45.6
CBR_g32446 Chara braunii HOM05D000019 ORTHO05D000353 4.4e-17 94.7 124 40.3
SEGI_02434 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 7.0e-15 87.4 77 55.8
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.0e-14 85.9 117 47.0
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 2.6e-14 85.5 159 35.2
Os05g0188600 Oryza sativa ssp. japonica HOM05D003625 ORTHO05D004382 4.7e-11 74.7 96 40.6
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 1.4e-10 73.2 120 34.2
Zm00001eb115510 Zea mays HOM05D003625 ORTHO05D004382 1.4e-10 73.2 176 34.1
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 3.0e-10 72.0 86 45.3
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 2.8e-08 65.5 119 36.1
TPR.G16077 Trifolium pratense HOM05D000200 ORTHO05D000262 6.3e-08 64.3 48 62.5
TPR.G163 Trifolium pratense HOM05D003625 ORTHO05D004382 4.1e-07 61.6 106 49.1
HanXRQChr16g0512981 Helianthus annuus HOM05D003625 ORTHO05D048258 7.0e-07 60.8 48 66.7
HanXRQChr16g0513531 Helianthus annuus HOM05D003625 ORTHO05D222387 3.5e-06 58.5 83 34.9
HanXRQChr01g0002901 Helianthus annuus HOM05D003625 ORTHO05D004382 4.5e-06 58.2 101 39.6


User provided reference genes

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