Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 1.3e-129 468.0 736 100.0
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 1.2e-117 428.3 738 91.1
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 2.1e-103 380.9 370 78.1
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 6.9e-102 375.9 211 94.8
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 1.2e-101 375.2 212 94.3
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 3.4e-101 373.6 211 94.3
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 1.0e-100 372.1 210 93.8
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 1.3e-100 371.7 212 93.9
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 3.8e-100 370.2 212 93.9
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 6.5e-100 369.4 209 91.9
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 7.1e-99 365.9 211 93.4
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 7.9e-98 362.5 212 90.6
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 1.0e-97 362.1 210 89.0
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 1.0e-97 362.1 212 89.2
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 1.3e-97 361.7 212 88.2
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 1.3e-97 361.7 221 87.8
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 2.3e-97 360.9 213 92.5
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 3.0e-97 360.5 212 89.2
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 3.9e-97 360.1 212 88.2
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 8.7e-97 359.0 212 88.7
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 1.9e-96 357.8 211 87.2
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 2.5e-96 357.5 209 88.5
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 3.3e-96 357.1 212 87.7
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 3.3e-96 357.1 210 89.5
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 3.3e-96 357.1 212 87.7
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 5.7e-96 356.3 209 89.5
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 1.3e-95 355.1 212 87.7
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 1.3e-95 355.1 212 87.3
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 1.6e-95 354.8 212 87.3
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 1.6e-95 354.8 211 91.0
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 2.1e-95 354.4 210 86.2
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 3.7e-95 353.6 212 86.8
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 4.8e-95 353.2 212 86.8
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 6.3e-95 352.8 210 87.1
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 6.3e-95 352.8 210 85.7
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 8.2e-95 352.4 212 86.3
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 8.2e-95 352.4 213 86.4
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 1.1e-94 352.1 210 87.1
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 1.1e-94 352.1 207 89.4
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 1.4e-94 351.7 212 85.8
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 1.8e-94 351.3 209 87.1
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 3.1e-94 350.5 213 86.9
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 4.1e-94 350.1 213 85.9
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 6.9e-94 349.4 213 86.9
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 6.9e-94 349.4 210 86.2
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 1.5e-93 348.2 212 88.2
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 2.6e-93 347.4 212 86.8
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 4.5e-93 346.7 213 84.5
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 4.5e-93 346.7 213 84.5
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 4.5e-93 346.7 213 84.5
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 5.9e-93 346.3 213 86.4
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 5.9e-93 346.3 213 86.4
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 5.9e-93 346.3 213 84.5
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 5.9e-93 346.3 213 84.5
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.0e-92 345.5 213 84.5
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.0e-92 345.5 213 85.9
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 1.3e-92 345.1 213 85.0
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 3.8e-92 343.6 212 84.0
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 5.0e-92 343.2 210 83.8
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 6.5e-92 342.8 214 85.5
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 8.5e-92 342.4 213 83.6
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.1e-91 342.0 213 85.0
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 1.9e-91 341.3 362 74.3
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 2.5e-91 340.9 205 86.3
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 2.5e-91 340.9 205 86.3
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 2.5e-91 340.9 210 84.3
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 2.5e-91 340.9 210 83.8
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 2.5e-91 340.9 210 82.9
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 3.2e-91 340.5 202 88.1
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 4.2e-91 340.1 210 82.9
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 4.2e-91 340.1 208 82.7
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 1.2e-90 338.6 213 82.6
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 1.2e-90 338.6 220 83.2
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 1.6e-90 338.2 210 83.8
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 1.6e-90 338.2 212 83.0
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 1.0e-89 335.5 212 82.5
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 6.7e-89 332.8 210 80.5
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 1.5e-88 331.6 212 81.1
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 3.3e-88 330.5 208 80.8
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 1.6e-87 328.2 208 80.3
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 2.4e-86 324.3 196 86.7
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 4.1e-86 323.6 251 72.1
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 6.9e-86 322.8 202 83.7
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 3.4e-85 320.5 195 83.6
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.4e-83 315.1 210 77.1
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 1.9e-83 314.7 212 77.8
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 2.5e-83 314.3 212 77.8
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 3.6e-82 310.5 213 75.6
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.4e-81 308.5 210 74.8
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 1.8e-81 308.1 207 77.3
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 5.1e-81 306.6 225 78.7
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 1.5e-80 305.1 190 84.2
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 5.7e-80 303.1 179 88.3
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 1.3e-76 292.0 182 82.4
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 1.7e-76 291.6 182 83.5
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 1.1e-75 288.9 213 69.5
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 1.4e-75 288.5 180 82.8
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 9.1e-70 269.2 200 68.0
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.6e-69 268.5 190 72.6
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 2.0e-69 268.1 208 66.8
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 1.7e-68 265.0 202 70.8
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 1.9e-67 261.5 210 64.8
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 4.0e-65 253.8 157 86.6
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 3.7e-63 247.3 188 71.8
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 1.1e-62 245.7 180 75.6
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 1.9e-59 235.0 171 73.1
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 5.4e-54 216.9 194 62.4
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.8e-42 177.9 156 59.6
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 3.6e-34 151.0 94 83.0
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 2.6e-32 144.8 115 62.6
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 5.8e-32 143.7 103 80.6
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 5.6e-27 127.1 199 40.2
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 2.1e-26 125.2 79 78.5
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 1.2e-24 119.4 203 37.9
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 5.8e-24 117.1 82 76.8
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 1.3e-23 115.9 75 77.3
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 3.7e-23 114.4 64 90.6
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 9.2e-22 109.8 63 82.5
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 7.3e-19 100.1 63 77.8
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 1.2e-18 99.4 56 87.5
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 1.4e-17 95.9 180 37.2
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.4e-17 95.9 107 50.5
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 1.8e-17 95.5 66 74.2
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.2e-16 92.8 56 78.6
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 1.3e-15 89.4 168 36.3
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 8.4e-15 86.7 63 71.4
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 1.4e-14 85.9 142 35.2
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 1.4e-14 85.9 142 35.2
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 9.2e-14 83.2 52 76.9
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 7.8e-13 80.1 159 36.5
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 4.0e-09 67.8 58 65.5
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 3.4e-08 64.7 35 85.7
Cfa023102 Carpinus fangiana HOM05D000298 ORTHO05D125655 2.2e-07 62.0 152 27.0
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 3.8e-07 61.2 36 77.8


User provided reference genes

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