Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.D8LL59 Arachis hypogaea HOM05D002543 ORTHO05D021537 1.5e-50 203.4 185 100.0
ClCG01G010830 Citrullus lanatus HOM05D002543 ORTHO05D002990 1.8e-19 100.1 55 83.6
Sed0006506 Sechium edule HOM05D002543 ORTHO05D002990 1.8e-19 100.1 55 83.6
Duzib177G1067 Durio zibethinus HOM05D002543 ORTHO05D002990 3.1e-19 99.4 54 85.2
Glyma.03G230000 Glycine max HOM05D002543 ORTHO05D002990 4.1e-19 99.0 54 83.3
Glyma.19G227700 Glycine max HOM05D002543 ORTHO05D002990 4.1e-19 99.0 54 83.3
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 4.1e-19 99.0 54 85.2
VMungo1383G0020 Vigna mungo HOM05D002543 ORTHO05D002990 4.1e-19 99.0 54 83.3
arahy.Tifrunner.gnm1.ann1.E4P10T Arachis hypogaea HOM05D002543 ORTHO05D002990 5.3e-19 98.6 51 90.2
arahy.Tifrunner.gnm1.ann1.GJPT5D Arachis hypogaea HOM05D002543 ORTHO05D002990 5.3e-19 98.6 51 90.2
Hma1.2p1_0008F-1.1_g005360 Hydrangea macrophylla HOM05D002543 ORTHO05D002990 5.3e-19 98.6 55 83.6
Hma1.2p1_1808F.1_g303465 Hydrangea macrophylla HOM05D002543 ORTHO05D002990 5.3e-19 98.6 55 83.6
Potri.013G006100 Populus trichocarpa HOM05D002543 ORTHO05D002990 5.3e-19 98.6 55 83.6
BcaB07g34128 Brassica carinata HOM05D002543 ORTHO05D002990 7.0e-19 98.2 55 80.0
BcaC05g24788 Brassica carinata HOM05D002543 ORTHO05D002990 7.0e-19 98.2 55 80.0
A06p06060 Brassica napus HOM05D002543 ORTHO05D002990 7.0e-19 98.2 55 80.0
C05p07330 Brassica napus HOM05D002543 ORTHO05D002990 7.0e-19 98.2 55 80.0
BolC5t29491H Brassica oleracea HOM05D002543 ORTHO05D002990 7.0e-19 98.2 55 80.0
BraA06t23817Z Brassica rapa HOM05D002543 ORTHO05D002990 7.0e-19 98.2 55 80.0
Cpa.g.sc48.194 Carica papaya HOM05D002543 ORTHO05D002990 7.0e-19 98.2 55 81.8
Dinv30917 Davidia involucrata HOM05D002543 ORTHO05D002990 7.0e-19 98.2 55 81.8
Nn3g21830 Nelumbo nucifera HOM05D002543 ORTHO05D002990 7.0e-19 98.2 55 81.8
CARHR009310 Cardamine hirsuta HOM05D002543 ORTHO05D002990 9.1e-19 97.8 61 73.8
Thhalv10007937m.g Eutrema salsugineum HOM05D002543 ORTHO05D002990 9.1e-19 97.8 61 73.8
MBI19_g32691_MAGBIO Magnolia biondii HOM05D002543 ORTHO05D002990 9.1e-19 97.8 55 78.2
PSO210G0417 Papaver somniferum HOM05D002543 ORTHO05D002990 9.1e-19 97.8 55 81.8
PSO761G0053 Papaver somniferum HOM05D002543 ORTHO05D002990 9.1e-19 97.8 55 81.8
Sp1g07950 Schrenkiella parvula HOM05D002543 ORTHO05D002990 9.1e-19 97.8 61 73.8
THA.LOC104816855 Tarenaya hassleriana HOM05D002543 ORTHO05D002990 9.1e-19 97.8 54 83.3
TPR.G1672 Trifolium pratense HOM05D002543 ORTHO05D002990 9.1e-19 97.8 54 83.3
MELO3C008920.2 Cucumis melo HOM05D002543 ORTHO05D002990 1.2e-18 97.4 55 81.8
FvH4_6g07910 Fragaria vesca HOM05D002543 ORTHO05D002990 1.2e-18 97.4 55 80.0
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 1.2e-18 97.4 55 80.0
FAN14G2557 Fragaria x ananassa HOM05D002543 ORTHO05D002990 1.2e-18 97.4 55 80.0
Lj1g0015240 Lotus japonicus HOM05D002543 ORTHO05D002990 1.2e-18 97.4 61 75.4
Medtr7g111860 Medicago truncatula HOM05D002543 ORTHO05D002990 1.2e-18 97.4 54 81.5
Psat3g014320 Pisum sativum HOM05D002543 ORTHO05D002990 1.2e-18 97.4 54 81.5
Potri.005G010266 Populus trichocarpa HOM05D002543 ORTHO05D002990 1.2e-18 97.4 55 81.8
QL03p017109 Quercus lobata HOM05D002543 ORTHO05D002990 1.2e-18 97.4 55 80.0
QL03p017392 Quercus lobata HOM05D002543 ORTHO05D002990 1.2e-18 97.4 55 80.0
EL10Ac4g09505 Beta vulgaris HOM05D002543 ORTHO05D002990 1.6e-18 97.1 55 80.0
Cc02_g35140 Coffea canephora HOM05D002543 ORTHO05D002990 1.6e-18 97.1 54 81.5
Ah.04g158450 Amaranthus hybridus HOM05D002543 ORTHO05D002990 2.0e-18 96.7 55 78.2
CDE08G1278 Ceratophyllum demersum HOM05D002543 ORTHO05D002990 2.0e-18 96.7 54 83.3
CsaV3_4G030580 Cucumis sativus L. HOM05D002543 ORTHO05D002990 2.0e-18 96.7 61 75.4
Lalb_Chr04g0260351 Lupinus albus HOM05D002543 ORTHO05D002990 2.0e-18 96.7 61 72.1
GSVIVG01031272001 Vitis vinifera HOM05D002543 ORTHO05D002990 2.0e-18 96.7 54 83.3
Aa31LG1G5780 Aethionema arabicum HOM05D002543 ORTHO05D002990 2.7e-18 96.3 61 72.1
CiPaw.07G031800 Carya illinoinensis HOM05D002543 ORTHO05D002990 2.7e-18 96.3 55 78.2
AUR62000430 Chenopodium quinoa HOM05D002543 ORTHO05D002990 2.7e-18 96.3 55 78.2
AUR62006776 Chenopodium quinoa HOM05D002543 ORTHO05D002990 2.7e-18 96.3 55 78.2
Dinv30918 Davidia involucrata HOM05D002543 ORTHO05D002990 2.7e-18 96.3 53 83.0
FAN02G0698 Fragaria x ananassa HOM05D002543 ORTHO05D002990 2.7e-18 96.3 55 80.0
FAN05G0666 Fragaria x ananassa HOM05D002543 ORTHO05D002990 2.7e-18 96.3 55 80.0
Phvul.001G223800 Phaseolus vulgaris HOM05D002543 ORTHO05D002990 2.7e-18 96.3 54 81.5
RcHm_v2.0_Chr3g0457611 Rosa chinensis HOM05D002543 ORTHO05D002990 2.7e-18 96.3 55 80.0
Aqoxy7G03338 Aquilegia oxysepala HOM05D002543 ORTHO05D002990 3.5e-18 95.9 54 79.6
Carub.0001s0868 Capsella rubella HOM05D002543 ORTHO05D002990 3.5e-18 95.9 61 72.1
Ca_09289_v3 Cicer arietinum L. HOM05D002543 ORTHO05D002990 3.5e-18 95.9 61 72.1
Manes.09G179000 Manihot esculenta HOM05D002543 ORTHO05D002990 3.5e-18 95.9 55 80.0
Hund21861 Selenicereus undatus HOM05D002543 ORTHO05D002990 3.5e-18 95.9 64 70.3
Sc09g0002550 Simmondsia chinensis HOM05D002543 ORTHO05D002990 3.5e-18 95.9 55 78.2
Thecc.05G326100 Theobroma cacao HOM05D002543 ORTHO05D002990 3.5e-18 95.9 54 81.5
AL1G19830 Arabidopsis lyrata HOM05D002543 ORTHO05D002990 4.5e-18 95.5 61 72.1
BcaC07g41890 Brassica carinata HOM05D002543 ORTHO05D002990 4.5e-18 95.5 61 72.1
MD12G1203600 Malus domestica HOM05D002543 ORTHO05D002990 4.5e-18 95.5 55 76.4
THA.LOC104820540 Tarenaya hassleriana HOM05D002543 ORTHO05D002990 4.5e-18 95.5 61 73.8
AT1G09340 Arabidopsis thaliana HOM05D002543 ORTHO05D002990 5.9e-18 95.1 61 70.5
Ciclev10001494m.g Citrus clementina HOM05D002543 ORTHO05D002990 5.9e-18 95.1 54 81.5
Zm00001eb261910 Zea mays HOM05D002543 ORTHO05D002990 5.9e-18 95.1 62 75.8
Actinidia16883 Actinidia chinensis HOM05D002543 ORTHO05D002990 7.7e-18 94.7 55 78.2
CANSAT54G0111 Cannabis sativa HOM05D002543 ORTHO05D002990 7.7e-18 94.7 54 81.5
CDE02G1117 Ceratophyllum demersum HOM05D002543 ORTHO05D002990 7.7e-18 94.7 66 69.7
TAR362G1343 Trochodendron aralioides HOM05D002543 ORTHO05D002990 7.7e-18 94.7 55 78.2
Eucgr.H03311 Eucalyptus grandis HOM05D002543 ORTHO05D002990 1.0e-17 94.4 54 81.5
Os12g0420200 Oryza sativa ssp. japonica HOM05D002543 ORTHO05D002990 1.0e-17 94.4 54 79.6
Prupe.6G309500 Prunus persica HOM05D002543 ORTHO05D002990 1.0e-17 94.4 55 78.2
TWI56G1324 Tripterygium wilfordii HOM05D002543 ORTHO05D002990 1.0e-17 94.4 54 81.5
MSTRG.27925 Avicennia marina HOM05D002543 ORTHO05D002990 1.3e-17 94.0 61 73.8
Gohir.A11G274700 Gossypium hirsutum HOM05D002543 ORTHO05D002990 1.3e-17 94.0 66 68.2
MD04G1191000 Malus domestica HOM05D002543 ORTHO05D002990 1.3e-17 94.0 55 76.4
SGA_v2.0_scaffold5G02903 Striga asiatica HOM05D002543 ORTHO05D002990 1.7e-17 93.6 54 79.6
ATR0693G343 Amborella trichopoda HOM05D002543 ORTHO05D002990 2.2e-17 93.2 55 78.2
MSTRG.5153 Avicennia marina HOM05D002543 ORTHO05D002990 2.2e-17 93.2 64 68.8
CSS0021124 Camellia sinensis var. sinensis HOM05D002543 ORTHO05D002990 2.2e-17 93.2 54 79.6
unitig_749.g13404 Utricularia gibba HOM05D002543 ORTHO05D002990 2.2e-17 93.2 54 79.6
Atru.chr2.231 Acer truncatum HOM05D002543 ORTHO05D002990 2.9e-17 92.8 55 74.5
Cfa006711 Carpinus fangiana HOM05D002543 ORTHO05D002990 2.9e-17 92.8 55 74.5
Haze_04051 Corylus avellana HOM05D002543 ORTHO05D002990 2.9e-17 92.8 54 77.8
DCAR_005274 Daucus carota HOM05D002543 ORTHO05D002990 2.9e-17 92.8 54 77.8
Gohir.D11G284900 Gossypium hirsutum HOM05D002543 ORTHO05D002990 2.9e-17 92.8 66 68.2
Gorai.007G308300 Gossypium raimondii HOM05D002543 ORTHO05D002990 2.9e-17 92.8 66 68.2
HanXRQChr01g0008121 Helianthus annuus HOM05D002543 ORTHO05D002990 2.9e-17 92.8 54 77.8
Oeu053729.3 Olea europaea HOM05D002543 ORTHO05D002990 2.9e-17 92.8 61 72.1
CAN.G65.169 Capsicum annuum HOM05D002543 ORTHO05D002990 3.8e-17 92.4 54 79.6
ECA248G3036 Erigeron canadensis HOM05D002543 ORTHO05D002990 3.8e-17 92.4 54 77.8
HanXRQChr13g0388191 Helianthus annuus HOM05D002543 ORTHO05D002990 3.8e-17 92.4 54 77.8
Lsat_1_v5_gn_5_157440 Lactuca sativa HOM05D002543 ORTHO05D002990 3.8e-17 92.4 54 77.8
Manes.16G048915 Manihot esculenta HOM05D002543 ORTHO05D002990 3.8e-17 92.4 55 78.2
Rhsim11G0098700 Rhododendron simsii HOM05D002543 ORTHO05D002990 3.8e-17 92.4 55 78.2
SalBow7G2281 Salvia bowleyana HOM05D002543 ORTHO05D002990 3.8e-17 92.4 54 79.6
Solyc06g073260.3 Solanum lycopersicum HOM05D002543 ORTHO05D002990 3.8e-17 92.4 54 79.6
Sopen06g029620 Solanum pennellii HOM05D002543 ORTHO05D002990 3.8e-17 92.4 54 79.6
PGSC0003DMG400026913 Solanum tuberosum HOM05D002543 ORTHO05D002990 3.8e-17 92.4 54 79.6
Nitab4.5_0002084g0070 Nicotiana tabacum HOM05D002543 ORTHO05D002990 5.0e-17 92.0 54 77.8
Nitab4.5_0006914g0020 Nicotiana tabacum HOM05D002543 ORTHO05D002990 5.0e-17 92.0 54 77.8
Peaxi162Scf00413g00612 Petunia axillaris HOM05D002543 ORTHO05D002990 5.0e-17 92.0 54 77.8
Sabra13G0005200 Salix brachista HOM05D002543 ORTHO05D002990 5.0e-17 92.0 61 75.4
CBR_g216 Chara braunii HOM05D002543 ORTHO05D002990 6.5e-17 91.7 54 74.1
Migut.N00952 Erythranthe guttata HOM05D002543 ORTHO05D002990 6.5e-17 91.7 54 77.8
PGR031G1645 Punica granatum HOM05D002543 ORTHO05D002990 6.5e-17 91.7 54 77.8
SMO169G0181 Selaginella moellendorffii HOM05D002543 ORTHO05D002990 6.5e-17 91.7 61 70.5
Actinidia35506 Actinidia chinensis HOM05D002543 ORTHO05D002990 8.5e-17 91.3 51 82.4
COL.COLO4_05521 Corchorus olitorius HOM05D002543 ORTHO05D002990 8.5e-17 91.3 54 79.6
Lju99A11T81 Lonicera japonica HOM05D002543 ORTHO05D002990 8.5e-17 91.3 54 77.8
vmacro01588 Vaccinium macrocarpon HOM05D002543 ORTHO05D002990 1.1e-16 90.9 54 77.8
Pp3c22_14530 Physcomitrium patens HOM05D002543 ORTHO05D002990 2.5e-16 89.7 54 74.1
arahy.Tifrunner.gnm1.ann1.B43GKP Arachis hypogaea HOM05D001103 ORTHO05D018483 4.2e-16 89.0 67 70.1
AagrBONN_evm.TU.Sc2ySwM_117.679 Anthoceros agrestis HOM05D002543 ORTHO05D002990 7.2e-16 88.2 66 65.2
Mapoly0014s0058 Marchantia polymorpha HOM05D002543 ORTHO05D002990 1.2e-15 87.4 62 64.5
Cre10.g435800 Chlamydomonas reinhardtii HOM05D002543 ORTHO05D002990 1.8e-14 83.6 54 68.5
HanXRQChr09g0252291 Helianthus annuus HOM05D002543 ORTHO05D002990 8.8e-14 81.3 54 72.2
FAN01G1511 Fragaria x ananassa HOM05D002543 ORTHO05D021537 2.4e-11 73.2 52 67.3
HanXRQChr11g0337781 Helianthus annuus HOM05D000522 ORTHO05D000565 3.1e-11 72.8 45 73.3
FAN10G0623 Fragaria x ananassa HOM05D002543 ORTHO05D021537 1.2e-10 70.9 46 71.7
FAN10G1760 Fragaria x ananassa HOM05D002543 ORTHO05D021537 1.2e-10 70.9 52 65.4
FAN03G0917 Fragaria x ananassa HOM05D004650 ORTHO05D005715 2.0e-10 70.1 46 71.7
C08p49510 Brassica napus HOM05D002543 ORTHO05D002990 1.9e-08 63.5 35 80.0
arahy.Tifrunner.gnm1.ann1.HHC45T Arachis hypogaea HOM05D001103 ORTHO05D000954 9.5e-08 61.2 36 83.3
arahy.Tifrunner.gnm1.ann1.9C4868 Arachis hypogaea HOM05D000311 ORTHO05D000183 1.4e-06 57.4 146 79.5
Hma1.2p1_0045F.1_g026490 Hydrangea macrophylla HOM05D002543 ORTHO05D002990 1.4e-06 57.4 31 87.1
BcaC07g41896 Brassica carinata HOM05D002543 ORTHO05D002990 6.8e-06 55.1 32 75.0
FAN09G3392 Fragaria x ananassa HOM05D002543 ORTHO05D002990 8.8e-06 54.7 36 66.7


User provided reference genes

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