Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 3.9e-242 841.3 498 100.0
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 6.7e-226 787.3 502 93.0
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 6.0e-166 588.2 496 66.5
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 7.8e-166 587.8 497 71.6
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 1.2e-161 573.9 488 67.0
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 1.1e-159 567.4 490 65.9
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 4.2e-159 565.5 493 64.7
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 4.8e-155 552.0 490 63.7
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 7.6e-153 544.7 497 64.4
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 2.4e-151 539.7 513 67.1
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 9.3e-151 537.7 512 61.3
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 4.9e-144 515.4 468 66.9
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 6.4e-144 515.0 497 60.2
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 5.5e-143 511.9 499 63.7
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 5.5e-143 511.9 499 60.5
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 7.1e-143 511.5 499 63.5
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 1.1e-140 504.2 516 59.1
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 2.1e-139 500.0 515 57.9
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 3.7e-139 499.2 502 60.2
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 3.7e-139 499.2 500 62.4
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 9.0e-138 494.6 492 65.7
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 3.4e-137 492.7 497 61.2
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 1.3e-136 490.7 498 59.6
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 1.7e-136 490.3 495 66.7
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 3.8e-136 489.2 500 58.2
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 3.8e-136 489.2 500 58.6
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 6.5e-136 488.4 496 63.7
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 8.4e-136 488.0 499 63.7
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 8.4e-136 488.0 523 53.9
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.9e-135 486.9 500 56.4
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 3.2e-135 486.1 483 55.7
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 4.2e-135 485.7 499 62.9
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 4.2e-135 485.7 496 60.7
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 5.5e-135 485.3 496 60.7
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 2.7e-134 483.0 505 59.0
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 2.7e-134 483.0 496 56.2
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 2.7e-134 483.0 509 57.6
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 3.5e-134 482.6 479 55.1
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 3.5e-134 482.6 484 58.9
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 7.9e-134 481.5 501 62.3
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 3.0e-133 479.6 478 60.0
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 3.0e-133 479.6 510 60.6
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 3.9e-133 479.2 498 58.4
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 5.1e-133 478.8 483 61.1
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 8.7e-133 478.0 500 55.8
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.1e-132 477.6 503 55.3
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 1.5e-132 477.2 507 57.8
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 1.5e-132 477.2 504 61.3
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 2.5e-132 476.5 518 54.2
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 5.7e-132 475.3 496 53.0
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 1.3e-131 474.2 502 56.0
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.6e-131 473.8 509 57.0
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 1.6e-131 473.8 489 65.0
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 2.8e-131 473.0 513 55.8
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 4.8e-131 472.2 410 60.7
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 8.2e-131 471.5 425 59.3
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 1.1e-130 471.1 484 57.9
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 1.1e-130 471.1 492 55.9
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 1.1e-130 471.1 488 54.5
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 2.4e-130 469.9 472 61.7
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 2.4e-130 469.9 482 61.0
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 4.1e-130 469.2 513 59.3
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 4.1e-130 469.2 507 56.8
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 5.3e-130 468.8 472 62.9
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 5.3e-130 468.8 467 55.7
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 6.9e-130 468.4 472 61.4
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.2e-129 467.6 411 66.2
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.5e-129 467.2 490 55.1
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 1.5e-129 467.2 427 60.7
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 1.5e-129 467.2 476 56.7
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 3.4e-129 466.1 477 62.3
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 3.4e-129 466.1 411 65.9
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 3.4e-129 466.1 504 53.4
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 4.5e-129 465.7 489 54.2
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 7.6e-129 464.9 479 62.0
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 1.7e-128 463.8 507 54.4
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 2.2e-128 463.4 511 53.2
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 8.4e-128 461.5 506 53.4
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.4e-127 460.7 495 53.1
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 1.9e-127 460.3 496 60.1
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 2.5e-127 459.9 525 51.0
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 3.2e-127 459.5 506 53.0
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 5.5e-127 458.8 498 56.6
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 9.3e-127 458.0 496 59.9
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 1.2e-126 457.6 501 56.5
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 2.1e-126 456.8 496 51.0
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 2.7e-126 456.4 510 52.2
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 3.5e-126 456.1 514 53.9
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 1.0e-125 454.5 497 57.3
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 1.3e-125 454.1 512 57.4
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 2.3e-125 453.4 490 53.9
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 2.3e-125 453.4 505 54.3
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 3.0e-125 453.0 489 59.9
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 3.0e-125 453.0 501 55.1
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 5.1e-125 452.2 414 60.1
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 8.7e-125 451.4 487 57.1
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 1.5e-124 450.7 498 57.8
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 1.5e-124 450.7 491 53.8
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 1.9e-124 450.3 472 60.6
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 2.5e-124 449.9 491 53.8
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 4.3e-124 449.1 493 59.8
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 5.7e-124 448.7 476 53.8
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 7.4e-124 448.4 497 55.3
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 7.4e-124 448.4 507 54.8
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 7.4e-124 448.4 515 56.1
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 9.7e-124 448.0 486 53.7
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 1.3e-123 447.6 470 60.6
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 1.3e-123 447.6 499 55.9
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 1.6e-123 447.2 514 54.1
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 2.2e-123 446.8 488 57.6
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 2.8e-123 446.4 501 57.1
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 6.3e-123 445.3 525 52.8
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 2.4e-122 443.4 511 53.2
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 9.0e-122 441.4 508 51.6
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 4.5e-121 439.1 508 54.3
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 5.9e-121 438.7 475 59.8
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 5.9e-121 438.7 487 57.5
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 7.7e-121 438.3 478 54.0
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 7.7e-121 438.3 512 55.7
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 1.0e-120 438.0 475 57.3
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.3e-120 437.6 505 51.9
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 1.7e-120 437.2 492 48.8
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 3.8e-120 436.0 499 52.3
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 8.5e-120 434.9 497 54.7
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 1.4e-119 434.1 454 55.7
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 4.2e-119 432.6 507 48.9
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 5.5e-119 432.2 493 58.4
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 4.6e-118 429.1 522 49.4
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.8e-117 427.2 432 54.4
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 2.3e-117 426.8 509 54.0
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 5.1e-117 425.6 491 55.8
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 2.0e-116 423.7 493 51.1
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 8.2e-115 418.3 407 56.3
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 3.1e-114 416.4 503 49.1
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 9.1e-114 414.8 482 57.3
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 2.6e-113 413.3 480 54.6
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.4e-113 412.9 412 57.3
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 2.9e-112 409.8 411 53.5
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 1.2e-110 404.4 423 53.4
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 1.0e-109 401.4 483 52.4
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 1.8e-109 400.6 499 48.9
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 4.4e-108 396.0 339 61.1
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 2.6e-105 386.7 410 58.8
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 5.2e-101 372.5 291 63.2
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 1.5e-100 370.9 428 52.6
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 1.8e-93 347.4 503 42.1
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 7.5e-92 342.0 404 48.3
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 1.2e-81 308.1 498 37.6
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 2.0e-81 307.4 338 50.3
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 3.5e-81 306.6 468 49.4
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 7.7e-81 305.4 491 43.6
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 2.1e-62 244.2 330 44.8
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 2.4e-50 204.1 217 53.0
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 4.1e-50 203.4 218 67.4
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 6.0e-49 199.5 248 45.2
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 1.3e-48 198.4 216 44.9
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 6.4e-43 179.5 325 42.2
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 1.9e-39 167.9 119 66.4
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 1.6e-33 148.3 345 35.9
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 4.6e-33 146.7 125 61.6
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 3.0e-32 144.1 143 54.5
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 6.7e-32 142.9 135 67.4
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.1e-29 135.6 129 67.4
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 6.9e-29 132.9 291 33.0
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 4.2e-26 123.6 126 61.9
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 3.0e-24 117.5 99 58.6
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 1.5e-23 115.2 124 48.4
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 1.5e-23 115.2 124 48.4
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 5.3e-21 106.7 142 46.5
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 1.2e-20 105.5 309 28.2
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 1.5e-15 88.6 70 54.3
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 8.5e-11 72.8 47 68.1
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 1.1e-10 72.4 130 36.2


User provided reference genes

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