Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 0.0e+00 1122.5 976 100.0
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 0.0e+00 1090.1 966 93.8
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 4.0e-230 802.4 976 71.2
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 1.5e-224 783.9 982 69.2
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 5.2e-222 775.4 488 90.6
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 7.5e-221 771.5 591 82.7
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 1.7e-220 770.4 973 73.6
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 9.1e-219 764.6 968 70.9
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 8.6e-217 758.1 1044 63.5
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 5.7e-213 745.3 494 84.8
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 5.0e-209 732.3 491 84.1
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 3.3e-208 729.6 588 79.1
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 9.5e-208 728.0 589 80.3
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 2.8e-207 726.5 592 75.2
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 1.7e-204 717.2 491 83.1
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 5.4e-203 712.2 598 74.2
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 1.7e-201 707.2 491 82.1
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 5.0e-201 705.7 492 78.7
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.1e-200 704.5 591 74.3
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 4.3e-200 702.6 596 74.2
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.2e-199 701.0 492 78.5
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 3.4e-197 693.0 594 72.9
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 4.9e-196 689.1 588 75.0
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.9e-195 687.2 479 79.1
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 7.1e-195 685.3 492 80.3
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 1.6e-194 684.1 588 75.0
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 1.6e-194 684.1 493 80.7
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 2.1e-194 683.7 487 79.9
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 3.5e-194 682.9 490 80.6
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 7.8e-194 681.8 496 81.2
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 1.7e-193 680.6 596 71.8
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 3.9e-193 679.5 501 79.2
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 3.9e-193 679.5 491 79.4
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 1.5e-192 677.6 485 77.1
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 4.3e-192 676.0 594 73.6
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 9.5e-192 674.9 593 72.0
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 2.8e-191 673.3 972 64.6
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 2.3e-190 670.2 481 78.8
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 7.5e-189 665.2 588 70.7
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 1.7e-188 664.1 493 77.7
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 4.9e-188 662.5 593 71.2
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 1.1e-187 661.4 493 78.5
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 7.1e-187 658.7 491 76.4
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 1.2e-186 657.9 491 76.2
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.6e-186 657.5 490 78.0
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 3.5e-186 656.4 500 77.2
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 6.0e-186 655.6 490 77.8
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 6.0e-186 655.6 490 77.8
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 6.0e-186 655.6 490 78.0
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 6.0e-186 655.6 493 77.9
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.3e-185 654.4 493 77.7
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 8.6e-185 651.7 491 77.8
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 1.9e-184 650.6 501 75.0
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 2.5e-184 650.2 493 73.8
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 7.3e-184 648.7 495 71.7
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 2.1e-183 647.1 490 74.3
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 8.1e-183 645.2 591 68.0
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 2.2e-180 637.1 491 74.9
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 7.1e-179 632.1 497 73.2
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 2.7e-178 630.2 493 75.1
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 1.9e-176 624.0 498 72.3
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 5.6e-176 622.5 489 73.6
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 3.6e-175 619.8 593 66.3
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 6.2e-175 619.0 493 72.0
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 9.0e-174 615.1 489 73.0
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 9.0e-174 615.1 607 67.1
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 2.0e-173 614.0 500 72.2
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 3.4e-173 613.2 500 72.4
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 4.4e-173 612.8 495 71.1
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 7.6e-173 612.1 979 65.7
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 8.4e-172 608.6 595 67.6
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 1.1e-171 608.2 489 71.2
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 2.4e-171 607.1 490 72.0
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 1.6e-170 604.4 498 69.3
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 1.6e-170 604.4 490 71.4
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 7.8e-170 602.1 498 69.1
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 7.8e-170 602.1 498 69.1
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 7.8e-170 602.1 502 71.3
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 7.8e-170 602.1 496 72.0
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 1.7e-169 600.9 498 68.9
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 2.3e-169 600.5 498 70.7
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 2.3e-169 600.5 498 68.9
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 6.6e-169 599.0 613 63.6
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 5.6e-168 595.9 615 64.6
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 5.6e-168 595.9 635 61.4
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 1.3e-167 594.7 490 70.6
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 2.8e-167 593.6 596 65.6
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 3.6e-167 593.2 505 70.7
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 1.1e-166 591.7 505 69.7
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 1.1e-166 591.7 500 68.4
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 1.2e-165 588.2 493 72.0
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 4.9e-164 582.8 508 69.3
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 1.3e-161 574.7 605 65.0
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 2.3e-161 573.9 490 68.0
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 4.2e-155 553.1 493 66.1
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 5.5e-155 552.7 500 65.6
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 1.8e-150 537.7 610 61.3
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 7.6e-149 532.3 610 61.0
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 5.0e-148 529.6 500 63.2
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 1.2e-146 525.0 512 68.2
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 5.5e-123 446.4 498 58.2
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 7.2e-123 446.0 320 83.8
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 8.2e-119 432.6 315 82.5
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 1.6e-117 428.3 501 57.1
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 2.5e-115 421.0 514 55.6
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 1.7e-111 408.3 319 70.5
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 3.7e-111 407.1 290 72.8
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 6.2e-90 336.7 541 46.2
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 6.2e-90 336.7 497 48.3
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 3.4e-88 330.9 209 77.5
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 5.6e-75 287.0 435 48.0
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 1.8e-73 282.0 206 79.1
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 3.1e-73 281.2 500 45.6
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 5.2e-73 280.4 497 45.1
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 8.4e-71 273.1 287 61.3
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 9.2e-70 269.6 177 78.0
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 1.2e-69 269.2 276 63.8
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 2.4e-65 255.0 226 69.0
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 7.6e-64 250.0 236 57.6
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 2.5e-59 235.0 287 66.9
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 1.8e-57 228.8 178 69.1
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 3.2e-54 218.0 272 59.9
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 1.5e-27 129.4 145 57.2
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 8.2e-26 123.6 71 85.9
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 1.9e-22 112.5 58 93.1
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 3.6e-21 108.2 88 59.1
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 2.3e-20 105.5 86 61.6
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 2.8e-18 98.6 261 36.4
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 2.4e-17 95.5 79 82.3
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 4.5e-16 91.3 87 65.5
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 2.9e-15 88.6 104 52.9
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 6.5e-15 87.4 98 56.1
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 1.9e-14 85.9 422 26.3
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 1.0e-12 80.1 104 51.0
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 1.4e-12 79.7 429 30.1
arahy.Tifrunner.gnm1.ann1.6LH71N Arachis hypogaea HOM05D005307 ORTHO05D006695 3.9e-12 78.2 139 74.1
arahy.Tifrunner.gnm1.ann1.J4KN9P Arachis hypogaea HOM05D047407 ORTHO05D087377 7.4e-11 73.9 43 83.7
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 3.1e-09 68.6 121 46.3
Gohir.A01G041600 Gossypium hirsutum HOM05D001023 ORTHO05D000912 1.3e-07 63.2 102 37.3
Gorai.002G038400 Gossypium raimondii HOM05D001023 ORTHO05D000912 1.3e-07 63.2 102 37.3
AagrBONN_evm.TU.Sc2ySwM_344.2987 Anthoceros agrestis HOM05D005307 ORTHO05D006695 5.0e-07 61.2 96 54.2
Gohir.D05G333200 Gossypium hirsutum HOM05D001023 ORTHO05D000912 6.5e-07 60.8 109 32.1
Gohir.A04G047000 Gossypium hirsutum HOM05D001023 ORTHO05D000912 8.5e-07 60.5 102 34.3
Gorai.009G358300 Gossypium raimondii HOM05D001023 ORTHO05D000912 8.5e-07 60.5 102 34.3
BraA01t03245Z Brassica rapa HOM05D005307 ORTHO05D006695 1.1e-06 60.1 89 41.6
arahy.Tifrunner.gnm1.ann1.6FDN0X Arachis hypogaea HOM05D001023 ORTHO05D000912 1.5e-06 59.7 98 35.7
arahy.Tifrunner.gnm1.ann1.8WSJ5E Arachis hypogaea HOM05D001023 ORTHO05D000912 1.5e-06 59.7 98 35.7
Carub.0001s4292 Capsella rubella HOM05D001023 ORTHO05D000912 1.5e-06 59.7 102 35.3
Gohir.A11G291200 Gossypium hirsutum HOM05D001023 ORTHO05D000912 1.5e-06 59.7 109 33.9
Gohir.D11G301400 Gossypium hirsutum HOM05D001023 ORTHO05D000912 1.5e-06 59.7 109 33.9
Gorai.007G335300 Gossypium raimondii HOM05D001023 ORTHO05D000912 1.5e-06 59.7 109 33.9
ATR0730G215 Amborella trichopoda HOM05D001023 ORTHO05D000912 3.2e-06 58.5 112 33.9
THA.LOC104810411 Tarenaya hassleriana HOM05D001023 ORTHO05D000912 3.2e-06 58.5 102 32.4
Aa31LG10G1640 Aethionema arabicum HOM05D001023 ORTHO05D000912 4.2e-06 58.2 109 33.9
A01p24780 Brassica napus HOM05D001023 ORTHO05D000912 4.2e-06 58.2 91 35.2
Migut.M00654 Erythranthe guttata HOM05D001023 ORTHO05D000912 4.2e-06 58.2 110 34.5
Thhalv10021108m.g Eutrema salsugineum HOM05D001023 ORTHO05D000912 4.2e-06 58.2 110 33.6
Mapoly0001s0473 Marchantia polymorpha HOM05D042108 ORTHO05D048733 4.2e-06 58.2 104 51.0
BcaC05g29071 Brassica carinata HOM05D001023 ORTHO05D000912 5.5e-06 57.8 110 33.6
A05p34920 Brassica napus HOM05D001023 ORTHO05D000912 5.5e-06 57.8 110 33.6
C05p52830 Brassica napus HOM05D001023 ORTHO05D000912 5.5e-06 57.8 110 33.6
BolC5t33960H Brassica oleracea HOM05D001023 ORTHO05D000912 5.5e-06 57.8 110 33.6
BraA05t22306Z Brassica rapa HOM05D001023 ORTHO05D000912 5.5e-06 57.8 110 33.6
THA.LOC104822602 Tarenaya hassleriana HOM05D001023 ORTHO05D000912 5.5e-06 57.8 103 33.0
ECA232G0760 Erigeron canadensis HOM05D001023 ORTHO05D000912 7.2e-06 57.4 97 38.1
TWI38G1104 Tripterygium wilfordii HOM05D001023 ORTHO05D000912 7.2e-06 57.4 112 31.2
Zm00001eb120320 Zea mays HOM05D001023 ORTHO05D000912 7.2e-06 57.4 103 35.0
BcaB06g25380 Brassica carinata HOM05D001023 ORTHO05D000912 9.4e-06 57.0 110 32.7
BcaC01g03928 Brassica carinata HOM05D001023 ORTHO05D000912 9.4e-06 57.0 110 32.7
BcaC04g23542 Brassica carinata HOM05D001023 ORTHO05D000912 9.4e-06 57.0 84 39.3
A03p38850 Brassica napus HOM05D001023 ORTHO05D000912 9.4e-06 57.0 110 32.7
C03p47040 Brassica napus HOM05D001023 ORTHO05D000912 9.4e-06 57.0 110 32.7
C09p07240 Brassica napus HOM05D001023 ORTHO05D000912 9.4e-06 57.0 84 39.3
BolC3t16969H Brassica oleracea HOM05D001023 ORTHO05D000912 9.4e-06 57.0 110 32.7
BraA03t13033Z Brassica rapa HOM05D001023 ORTHO05D000912 9.4e-06 57.0 110 32.7
Carub.0003s1418 Capsella rubella HOM05D001023 ORTHO05D000912 9.4e-06 57.0 110 32.7
Thecc.07G146900 Theobroma cacao HOM05D001023 ORTHO05D000912 9.4e-06 57.0 102 33.3


User provided reference genes

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