Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8KX3ZR Arachis hypogaea HOM05D004291 ORTHO05D005620 2.2e-230 802.0 414 100.0
arahy.Tifrunner.gnm1.ann1.C5IA5B Arachis hypogaea HOM05D004291 ORTHO05D005620 2.2e-230 802.0 414 100.0
arahy.Tifrunner.gnm1.ann1.K8XT55 Arachis hypogaea HOM05D004291 ORTHO05D005620 2.2e-230 802.0 414 100.0
arahy.Tifrunner.gnm1.ann1.4JQ3QL Arachis hypogaea HOM05D004291 ORTHO05D005620 1.3e-227 792.7 414 99.5
arahy.Tifrunner.gnm1.ann1.E3XYYX Arachis hypogaea HOM05D004291 ORTHO05D005620 1.3e-227 792.7 414 99.5
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 1.5e-223 779.2 402 100.0
arahy.Tifrunner.gnm1.ann1.5E6QYU Arachis hypogaea HOM05D004291 ORTHO05D005620 6.2e-209 730.7 377 98.7
arahy.Tifrunner.gnm1.ann1.NTK3LG Arachis hypogaea HOM05D004291 ORTHO05D005620 9.9e-207 723.4 375 98.4
arahy.Tifrunner.gnm1.ann1.JQU8UC Arachis hypogaea HOM05D004291 ORTHO05D005620 2.4e-205 718.8 375 98.1
arahy.Tifrunner.gnm1.ann1.81GM5H Arachis hypogaea HOM05D004291 ORTHO05D005620 1.2e-199 699.9 348 100.0
arahy.Tifrunner.gnm1.ann1.I3FVC7 Arachis hypogaea HOM05D004291 ORTHO05D005620 1.5e-167 593.2 391 81.6
Medtr0212s0040 Medicago truncatula HOM05D000743 ORTHO05D000580 6.3e-153 544.7 346 82.7
Lalb_Chr00c21g0405651 Lupinus albus HOM05D004291 ORTHO05D005620 1.5e-138 496.9 250 97.6
Lalb_Chr00c24g0407111 Lupinus albus HOM05D004291 ORTHO05D005620 1.5e-138 496.9 250 97.6
Psat3g172200 Pisum sativum HOM05D004291 ORTHO05D005620 2.2e-137 493.0 251 98.0
Lj5g0026615 Lotus japonicus HOM05D004291 ORTHO05D005620 6.3e-137 491.5 245 98.8
LjContig00315g0005528 Lotus japonicus HOM05D004291 ORTHO05D005620 6.3e-137 491.5 245 98.8
RcHm_v2.0_MTg0498571 Rosa chinensis HOM05D004291 ORTHO05D005620 4.1e-136 488.8 251 97.2
TPR.G581 Trifolium pratense HOM05D004291 ORTHO05D005620 2.6e-130 469.5 235 98.3
Ca_03780_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 7.5e-130 468.0 234 98.3
Ca_31296_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 1.3e-129 467.2 240 96.7
CsaV3_5G015800 Cucumis sativus L. HOM05D004291 ORTHO05D005620 1.3e-129 467.2 251 93.2
ATMG00160 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 9.2e-128 461.1 249 93.6
CANSAT16G0053 Cannabis sativa HOM05D004291 ORTHO05D005620 2.7e-127 459.5 249 94.4
CARHR282690 Cardamine hirsuta HOM05D004291 ORTHO05D005620 2.7e-127 459.5 249 93.2
DCAR_032452 Daucus carota HOM05D004291 ORTHO05D005620 3.5e-127 459.1 249 94.0
RhsimMtG0001900 Rhododendron simsii HOM05D004291 ORTHO05D005620 1.0e-126 457.6 244 93.0
LjContig00315g0005262 Lotus japonicus HOM05D004291 ORTHO05D005620 4.3e-125 452.2 245 93.1
Nn1g09987 Nelumbo nucifera HOM05D004291 ORTHO05D005620 9.5e-125 451.1 251 92.4
Thhalv10023011m.g Eutrema salsugineum HOM05D004291 ORTHO05D005620 8.9e-123 444.5 249 90.4
Gorai.001G161700 Gossypium raimondii HOM05D004291 ORTHO05D005620 2.9e-121 439.5 222 97.7
Sed0009617 Sechium edule HOM05D004291 ORTHO05D005620 2.5e-117 426.4 222 95.0
arahy.Tifrunner.gnm1.ann1.8LYJ6L Arachis hypogaea HOM05D004291 ORTHO05D005620 8.1e-116 421.4 234 95.3
arahy.Tifrunner.gnm1.ann1.Y9PUBE Arachis hypogaea HOM05D004291 ORTHO05D005620 8.1e-116 421.4 234 95.3
Glyma.09G040100 Glycine max HOM05D004291 ORTHO05D005620 1.2e-114 417.5 242 84.7
A04p09440 Brassica napus HOM05D004291 ORTHO05D005620 6.4e-113 411.8 220 92.7
A04p09530 Brassica napus HOM05D004291 ORTHO05D005620 6.4e-113 411.8 220 92.7
BolSC28t60319H Brassica oleracea HOM05D004291 ORTHO05D005620 6.4e-113 411.8 220 92.7
BolSC28t60374H Brassica oleracea HOM05D004291 ORTHO05D005620 6.4e-113 411.8 220 92.7
BraSC48t46334Z Brassica rapa HOM05D004291 ORTHO05D005620 6.4e-113 411.8 220 92.7
BraSC54t46371Z Brassica rapa HOM05D004291 ORTHO05D005620 6.4e-113 411.8 220 92.7
BraSC54t46353Z Brassica rapa HOM05D004291 ORTHO05D005620 3.2e-112 409.5 219 92.7
BraSC48t46243Z Brassica rapa HOM05D004291 ORTHO05D005620 4.1e-112 409.1 221 92.8
SGA_v2.0_scaffold245G44781 Striga asiatica HOM05D004291 ORTHO05D005620 1.2e-111 407.5 221 92.8
Cfa021332 Carpinus fangiana HOM05D004291 ORTHO05D005620 1.0e-110 404.4 210 96.2
Phvul.009G252600 Phaseolus vulgaris HOM05D004291 ORTHO05D005620 1.3e-110 404.1 242 81.4
VMungo1309G0827 Vigna mungo HOM05D004291 ORTHO05D005620 1.3e-110 404.1 242 81.8
Sed0021216 Sechium edule HOM05D004291 ORTHO05D005620 2.1e-108 396.7 251 83.3
Ah.10g028620 Amaranthus hybridus HOM05D004291 ORTHO05D005620 2.3e-107 393.3 268 76.9
Ah.10g028820 Amaranthus hybridus HOM05D004291 ORTHO05D005620 2.3e-107 393.3 268 76.9
HanXRQMTg0579681 Helianthus annuus HOM05D004291 ORTHO05D005620 2.0e-106 390.2 275 75.3
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 3.4e-106 389.4 274 75.2
Potri.007G061781 Populus trichocarpa HOM05D004291 ORTHO05D005620 4.6e-103 379.0 215 87.9
Eucgr.I01856 Eucalyptus grandis HOM05D004291 ORTHO05D005620 8.6e-102 374.8 192 97.9
SabraMtG0008700 Salix brachista HOM05D004291 ORTHO05D005620 1.2e-100 370.9 206 89.3
GSVIVG01006909001 Vitis vinifera HOM05D004291 ORTHO05D005620 3.4e-98 362.8 202 91.1
BraSC54t46377Z Brassica rapa HOM05D004291 ORTHO05D005620 6.0e-95 352.1 191 92.1
Migut.J01259 Erythranthe guttata HOM05D004291 ORTHO05D005620 2.5e-93 346.7 181 95.0
RcHm_v2.0_MTg0498241 Rosa chinensis HOM05D004291 ORTHO05D005620 2.1e-92 343.6 182 95.6
Hma1.2p1_0716F.1_g208050 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 1.9e-88 330.5 170 97.6
AL8G12400 Arabidopsis lyrata HOM05D004291 ORTHO05D005620 5.1e-78 295.8 160 92.5
Psat1g132320 Pisum sativum HOM05D004291 ORTHO05D007972 6.2e-76 288.9 175 81.7
Nn1g09999 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.3e-70 271.2 169 85.2
Nn1g10072 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.3e-70 271.2 169 85.2
CAN.G1173.2 Capsicum annuum HOM05D004291 ORTHO05D005620 8.2e-68 261.9 153 87.6
Sed0022989 Sechium edule HOM05D004291 ORTHO05D005620 2.6e-66 256.9 127 96.9
Dinv06711 Davidia involucrata HOM05D004291 ORTHO05D005620 2.5e-64 250.4 189 71.4
unitig_87.g27941 Utricularia gibba HOM05D004291 ORTHO05D005620 2.5e-61 240.4 127 92.9
Psat0s4951g0120 Pisum sativum HOM05D004291 ORTHO05D005620 4.8e-60 236.1 138 88.4
PGSC0003DMG401031302 Solanum tuberosum HOM05D004291 ORTHO05D005620 2.2e-57 227.3 120 90.8
AUR62042349 Chenopodium quinoa HOM05D004291 ORTHO05D005620 5.5e-56 222.6 117 94.0
Lalb_Chr24g0400601 Lupinus albus HOM05D004291 ORTHO05D005620 7.2e-56 222.2 110 96.4
AUR62001626 Chenopodium quinoa HOM05D004291 ORTHO05D005620 7.9e-55 218.8 117 92.3
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 1.4e-54 218.0 117 92.3
Solyc00g500310.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.3e-54 217.2 117 90.6
HanXRQChr04g0112911 Helianthus annuus HOM05D004291 ORTHO05D005620 3.9e-54 216.5 117 91.5
Solyc00g500101.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.9e-54 216.5 117 90.6
Solyc00g500118.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.9e-54 216.5 117 90.6
Solyc00g500244.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.9e-54 216.5 117 90.6
Solyc00g500275.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.9e-54 216.5 117 90.6
Solyc00g500359.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.9e-54 216.5 117 90.6
PGSC0003DMG400013864 Solanum tuberosum HOM05D004291 ORTHO05D005620 2.6e-53 213.8 113 91.2
Sopen00g002740 Solanum pennellii HOM05D004291 ORTHO05D005620 2.2e-52 210.7 111 91.0
Lsat_1_v5_gn_6_95140 Lactuca sativa HOM05D004291 ORTHO05D005620 1.8e-51 207.6 117 88.0
SGA_v2.0_scaffold420G51405 Striga asiatica HOM05D004291 ORTHO05D005620 1.8e-51 207.6 129 81.4
CAN.G184.83 Capsicum annuum HOM05D004291 ORTHO05D005620 2.9e-49 200.3 114 85.1
SHI09335 Sapria himalayana HOM05D004291 ORTHO05D005620 3.2e-48 196.8 105 91.4
Thecc.10G006300 Theobroma cacao HOM05D004291 ORTHO05D005620 2.7e-47 193.7 110 87.3
TAR022G0001 Trochodendron aralioides HOM05D004291 ORTHO05D005620 1.4e-46 191.4 139 65.5
Os04g0343050 Oryza sativa ssp. japonica HOM05D004291 ORTHO05D005620 3.7e-44 183.3 112 82.1
AUR62042348 Chenopodium quinoa HOM05D004291 ORTHO05D005620 8.2e-44 182.2 96 92.7
TAR371G1150 Trochodendron aralioides HOM05D004291 ORTHO05D005620 4.1e-43 179.9 106 87.7
Lsat_1_v5_gn_6_95160 Lactuca sativa HOM05D004291 ORTHO05D005620 1.3e-41 174.9 104 85.6
Solyc09g015880.4 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.2e-40 170.2 93 86.0
Oeu042472.1 Olea europaea HOM05D004291 ORTHO05D005620 2.1e-39 167.5 117 68.4
BolSC28t60391H Brassica oleracea HOM05D004291 ORTHO05D005620 2.7e-39 167.2 84 95.2
Nitab4.5_0000309g0180 Nicotiana tabacum HOM05D001987 ORTHO05D005620 8.0e-39 165.6 106 78.3
Nitab4.5_0001819g0010 Nicotiana tabacum HOM05D004291 ORTHO05D005620 3.0e-38 163.7 92 83.7
CAN.G1897.5 Capsicum annuum HOM05D004291 ORTHO05D005620 2.6e-37 160.6 98 79.6
CDE02G1233 Ceratophyllum demersum HOM05D004291 ORTHO05D005620 2.2e-36 157.5 87 88.5
AT2G07695 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 1.8e-35 154.5 90 85.6
ATMG01280 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 1.8e-35 154.5 90 85.6
CARHR283480 Cardamine hirsuta HOM05D004291 ORTHO05D005620 1.8e-35 154.5 90 85.6
VMungo1309G2873 Vigna mungo HOM05D000045 ORTHO05D001346 7.0e-35 152.5 155 55.5
Nn1g09996 Nelumbo nucifera HOM05D004291 ORTHO05D005620 2.0e-34 151.0 80 91.2
Nn1g10097 Nelumbo nucifera HOM05D004291 ORTHO05D005620 2.0e-34 151.0 80 91.2
AUR62001625 Chenopodium quinoa HOM05D004291 ORTHO05D005620 4.5e-34 149.8 84 88.1
Nitab4.5_0000280g0210 Nicotiana tabacum HOM05D004291 ORTHO05D005620 3.8e-33 146.7 142 58.5
CAN.G8.27 Capsicum annuum HOM05D004291 ORTHO05D005620 1.9e-32 144.4 74 90.5
Lalb_Chr23g0276811 Lupinus albus HOM05D004291 ORTHO05D005620 9.4e-32 142.1 72 98.6
Cpa.g.sc555.1 Carica papaya HOM05D004291 ORTHO05D005620 1.2e-31 141.7 84 86.9
Ca_16076_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 1.2e-31 141.7 72 93.1
Nitab4.5_0007876g0040 Nicotiana tabacum HOM05D004291 ORTHO05D005620 6.1e-31 139.4 103 68.0
Cre01.g049500 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 1.8e-30 137.9 105 60.0
Dinv06717 Davidia involucrata HOM05D004291 ORTHO05D015100 3.7e-28 130.2 149 49.0
MELO3C030794.2 Cucumis melo HOM05D004291 ORTHO05D005620 1.1e-27 128.6 67 88.1
Sed0019535 Sechium edule HOM05D006604 ORTHO05D007974 1.1e-27 128.6 89 71.9
Psat0s3560g0080 Pisum sativum HOM05D000533 ORTHO05D002807 1.4e-27 128.3 60 96.7
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.1e-27 127.1 121 57.0
Mapoly0041s0129 Marchantia polymorpha HOM05D004291 ORTHO05D005620 4.1e-27 126.7 76 77.6
Cre03.g154350 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 2.7e-26 124.0 140 45.0
HanXRQMTg0579451 Helianthus annuus HOM05D004291 ORTHO05D005620 5.9e-26 122.9 126 59.5
CAN.G390.18 Capsicum annuum HOM05D004291 ORTHO05D005620 6.5e-25 119.4 61 95.1
ATR0461G001 Amborella trichopoda HOM05D004291 ORTHO05D005620 1.5e-24 118.2 61 95.1
SMO053G0014 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 3.2e-24 117.1 107 56.1
CAN.G15876.1 Capsicum annuum HOM05D004291 ORTHO05D005620 1.6e-23 114.8 80 62.5
Hma1.2p1_0716F.1_g208040 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 1.6e-23 114.8 63 87.3
MBI05_g05354_MAGBIO Magnolia biondii HOM05D004291 ORTHO05D005620 4.7e-23 113.2 117 55.6
Haze_27535 Corylus avellana HOM05D004291 ORTHO05D005620 1.0e-22 112.1 209 37.3
Solyc05g045870.2 Solanum lycopersicum HOM05D004291 ORTHO05D005620 4.0e-22 110.2 95 62.1
FAN04G2782 Fragaria x ananassa HOM05D003397 ORTHO05D004390 5.2e-22 109.8 58 86.2
Aa31csc464G30 Aethionema arabicum HOM05D006604 ORTHO05D007974 7.5e-21 105.9 156 48.1
BraSC77t46631Z Brassica rapa HOM05D004291 ORTHO05D005620 1.3e-20 105.1 61 82.0
BraSC177t45746Z Brassica rapa HOM05D004291 ORTHO05D005620 1.7e-20 104.8 92 62.0
Nitab4.5_0000007g0310 Nicotiana tabacum HOM05D004291 ORTHO05D005620 1.7e-20 104.8 70 71.4
CAN.G1449.6 Capsicum annuum HOM05D004291 ORTHO05D005620 3.7e-20 103.6 56 82.1
Solyc05g045850.3 Solanum lycopersicum HOM05D004291 ORTHO05D005620 8.3e-20 102.4 61 83.6
ATR0513G001 Amborella trichopoda HOM05D004291 ORTHO05D005620 3.1e-19 100.5 54 88.9
Solyc05g045930.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 8.6e-17 92.4 54 88.9
ATR0461G002 Amborella trichopoda HOM05D004291 ORTHO05D005620 1.1e-16 92.0 52 84.6
Solyc03g063780.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.3e-16 90.5 54 85.2
CARHR288260 Cardamine hirsuta HOM05D006604 ORTHO05D007974 8.0e-15 85.9 148 46.6
CARHR282790 Cardamine hirsuta HOM05D006604 ORTHO05D007974 1.0e-14 85.5 257 33.5
HanXRQChr00c0192g0572351 Helianthus annuus HOM05D004291 ORTHO05D005620 4.0e-14 83.6 71 66.2
Sabra01G0004500 Salix brachista HOM05D000521 ORTHO05D006286 2.6e-13 80.9 74 62.2
AT2G07741 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 3.4e-13 80.5 258 29.1
ATMG00410 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 3.4e-13 80.5 258 29.1
PGSC0003DMG400020450 Solanum tuberosum HOM05D004291 ORTHO05D005620 4.4e-13 80.1 48 77.1
Peaxi162Scf00268g01210 Petunia axillaris HOM05D004291 ORTHO05D005620 2.9e-12 77.4 40 87.5
CAN.G687.3 Capsicum annuum HOM05D004291 ORTHO05D005620 3.7e-12 77.0 48 85.4
SMO053G0010 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 3.7e-12 77.0 110 45.5
Solyc02g021365.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.7e-12 77.0 63 65.1
DCAR_031658 Daucus carota HOM05D006604 ORTHO05D007974 4.9e-12 76.6 105 41.9
DCAR_032438 Daucus carota HOM05D006604 ORTHO05D007974 4.9e-12 76.6 105 41.9
SHI33022 Sapria himalayana HOM05D004291 ORTHO05D005620 1.4e-11 75.1 52 76.9
Zm00001eb086120 Zea mays HOM05D025758 ORTHO05D015100 1.8e-11 74.7 75 50.7
Peaxi162Scf00187g00115 Petunia axillaris HOM05D004291 ORTHO05D005620 7.0e-11 72.8 46 76.1
Sp3g25850 Schrenkiella parvula HOM05D006604 ORTHO05D007974 3.5e-10 70.5 191 29.8
BraSC48t46285Z Brassica rapa HOM05D004291 ORTHO05D005620 7.8e-10 69.3 33 90.9
ClCG06G009310 Citrullus lanatus HOM05D004291 ORTHO05D005620 7.8e-10 69.3 33 90.9
SHI06816 Sapria himalayana HOM05D004291 ORTHO05D005620 7.8e-10 69.3 67 55.2
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 1.0e-09 68.9 49 65.3
CAN.G595.5 Capsicum annuum HOM05D004291 ORTHO05D005620 6.6e-09 66.2 49 67.3
BolSC28t60389H Brassica oleracea HOM05D004291 ORTHO05D005620 8.6e-09 65.9 31 90.3
BolSC28t60408H Brassica oleracea HOM05D004291 ORTHO05D005620 8.6e-09 65.9 31 90.3
Zm00001eb181630 Zea mays HOM05D013913 ORTHO05D015100 1.1e-08 65.5 68 48.5
SHI04268 Sapria himalayana HOM05D001960 ORTHO05D004348 1.5e-08 65.1 58 56.9
SHI08953 Sapria himalayana HOM05D004291 ORTHO05D005620 1.9e-08 64.7 156 32.1
Nitab4.5_0000216g0120 Nicotiana tabacum HOM05D004291 ORTHO05D005620 1.2e-07 62.0 29 89.7
Mapoly0007s0023 Marchantia polymorpha HOM05D004291 ORTHO05D005620 8.0e-07 59.3 49 61.2
Sc08g0004800 Simmondsia chinensis HOM05D004291 ORTHO05D005620 8.0e-07 59.3 47 66.0
unitig_87.g28014 Utricularia gibba HOM05D006604 ORTHO05D007974 8.0e-07 59.3 95 37.9
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 5.2e-06 56.6 41 68.3


User provided reference genes

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