Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 2479.9 1225 100.0
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 2292.7 1173 96.8
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 1817.7 1173 75.8
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 0.0e+00 1762.3 1172 74.1
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 0.0e+00 1753.0 1172 74.2
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 0.0e+00 1751.9 1177 73.7
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1749.2 1174 73.3
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1747.3 1171 73.7
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 0.0e+00 1588.5 1047 74.9
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 0.0e+00 1565.1 1055 73.8
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1478.0 1176 62.9
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1472.2 1175 62.2
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1462.2 1172 62.2
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1456.0 1170 60.0
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1440.2 1162 62.0
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1439.5 1160 60.7
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1429.8 1390 54.0
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1424.5 1174 59.8
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1421.8 1175 59.9
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1417.5 1179 60.0
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1414.1 1133 63.7
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1409.4 1161 60.7
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1409.4 1170 59.7
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1407.9 1192 59.1
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1401.0 1172 59.0
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1401.0 1178 61.1
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1383.2 1179 59.8
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 0.0e+00 1366.7 1208 57.1
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1363.2 1175 58.4
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1362.8 1186 58.9
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1360.1 1242 55.3
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 0.0e+00 1357.4 1176 57.7
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1353.6 1168 57.4
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 0.0e+00 1340.9 1171 56.4
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 0.0e+00 1331.2 1171 56.0
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 0.0e+00 1329.7 1189 57.4
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1327.4 1189 57.4
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 0.0e+00 1321.6 1179 56.5
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 0.0e+00 1317.0 1171 55.1
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1316.6 1187 57.1
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 0.0e+00 1315.8 1165 58.0
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 0.0e+00 1306.6 1175 56.4
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1296.2 1168 55.8
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 0.0e+00 1295.4 1173 55.2
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1295.0 1173 55.2
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1294.3 1381 50.9
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1293.9 1172 55.2
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1289.6 1187 56.2
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 0.0e+00 1287.7 1172 55.1
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1285.8 1171 55.2
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1285.0 1170 55.0
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 0.0e+00 1281.9 1205 54.9
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1281.9 1170 55.0
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1275.0 1172 54.3
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 0.0e+00 1268.8 1214 53.9
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 0.0e+00 1267.7 1171 53.7
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 1266.1 1162 54.8
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1264.6 1173 55.0
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 0.0e+00 1262.3 1171 54.1
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 0.0e+00 1250.0 1157 54.6
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 0.0e+00 1249.6 1157 53.8
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 0.0e+00 1249.2 1165 53.5
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 0.0e+00 1248.4 1171 53.7
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 0.0e+00 1248.0 1171 53.7
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 0.0e+00 1248.0 1160 55.6
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 0.0e+00 1246.1 1173 54.4
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 0.0e+00 1240.7 1157 54.6
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1232.6 1169 53.9
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 0.0e+00 1214.1 1181 53.0
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 0.0e+00 1211.1 1165 53.1
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 0.0e+00 1210.7 1037 58.4
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 0.0e+00 1209.1 1173 53.0
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 0.0e+00 1206.8 1187 53.1
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 0.0e+00 1189.1 1135 53.9
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1171.8 1174 51.9
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 0.0e+00 1168.3 1171 50.6
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 0.0e+00 1167.5 1172 50.8
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1157.5 1185 50.5
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 0.0e+00 1101.7 1117 50.9
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 0.0e+00 1081.6 1170 48.5
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 4.5e-308 1061.6 1217 46.9
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 1.1e-306 1057.0 1186 46.5
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 6.8e-304 1047.7 1113 49.7
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 1.9e-293 1013.1 1164 45.5
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 1.6e-289 1000.0 1152 47.4
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 2.3e-288 996.1 1115 49.1
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 3.3e-274 949.1 819 60.0
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 5.2e-272 941.8 752 63.3
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 2.8e-233 813.1 786 54.5
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 4.1e-232 809.3 1110 42.5
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 3.4e-223 779.6 716 54.7
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 5.0e-206 722.6 762 49.7
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 1.4e-200 704.5 1184 36.3
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 2.3e-174 617.5 582 52.7
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 9.5e-173 612.1 1177 34.7
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 1.4e-160 571.6 632 49.8
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 4.2e-152 543.5 433 63.3
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 5.8e-138 496.5 1114 32.0
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 3.0e-134 484.2 466 51.9
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 5.1e-126 456.8 393 56.7
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 1.5e-125 455.3 841 35.3
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 3.9e-110 404.1 422 50.2
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 7.7e-106 389.8 522 41.2
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 1.9e-104 385.2 240 85.0
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 7.0e-91 340.1 422 41.5
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 1.5e-85 322.4 294 54.4
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 3.7e-84 317.8 212 71.7
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 7.5e-69 266.9 178 68.0
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 2.3e-62 245.4 203 60.1
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 2.9e-60 238.4 174 69.5
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 9.9e-53 213.4 270 41.5
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 6.6e-49 200.7 1115 23.4
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 1.5e-29 136.3 157 45.9
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 4.5e-29 134.8 123 51.2
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 9.9e-29 133.7 322 29.8
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 3.0e-25 122.1 61 90.2
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 6.9e-22 110.9 53 94.3
arahy.Tifrunner.gnm1.ann1.5RG0UU Arachis hypogaea HOM05D006523 ORTHO05D008212 9.0e-22 110.5 57 96.5
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 6.4e-20 104.4 409 25.4
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 4.6e-18 98.2 462 23.6
arahy.Tifrunner.gnm1.ann1.CI9DXK Arachis hypogaea HOM05D005978 ORTHO05D007472 7.9e-18 97.4 48 95.8
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 7.4e-16 90.9 107 48.6
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 1.5e-13 83.2 71 54.9
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 1.0e-12 80.5 60 56.7
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 3.8e-12 78.6 54 70.4
SHI07939 Sapria himalayana HOM05D005978 ORTHO05D007472 9.3e-11 73.9 116 42.2
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 1.8e-09 69.7 46 65.2
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 3.9e-09 68.6 46 65.2


User provided reference genes

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