Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.BF4XTR Arachis hypogaea HOM05D005801 ORTHO05D008555 0.0e+00 1187.6 601 100.0
Lalb_Chr05g0223241 Lupinus albus HOM05D005801 ORTHO05D008555 5.3e-217 758.1 580 71.2
Phvul.002G308600 Phaseolus vulgaris HOM05D005801 ORTHO05D008555 5.6e-211 738.0 574 70.9
VMungo0251G1949 Vigna mungo HOM05D005801 ORTHO05D008555 2.6e-208 729.2 574 70.0
Glyma.08G033500 Glycine max HOM05D005801 ORTHO05D008555 5.5e-206 721.5 575 69.2
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 1.1e-201 707.2 604 64.7
Ca_17365_v3 Cicer arietinum L. HOM05D005801 ORTHO05D008555 1.8e-196 689.9 565 68.3
Medtr8g102480 Medicago truncatula HOM05D005801 ORTHO05D008555 2.3e-188 662.9 597 63.3
Psat7g016720 Pisum sativum HOM05D005801 ORTHO05D008555 6.5e-183 644.8 631 59.6
Thecc.09G100600 Theobroma cacao HOM05D005801 ORTHO05D008555 1.0e-172 610.9 580 60.2
Gorai.001G010100 Gossypium raimondii HOM05D005801 ORTHO05D008555 4.0e-172 609.0 574 61.0
Gohir.A07G009500 Gossypium hirsutum HOM05D005801 ORTHO05D008555 5.2e-172 608.6 573 61.3
Gohir.D07G009800 Gossypium hirsutum HOM05D005801 ORTHO05D008555 4.8e-170 602.1 570 60.2
CiPaw.04G157900 Carya illinoinensis HOM05D005801 ORTHO05D008555 1.1e-169 600.9 602 56.5
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 8.5e-167 591.3 585 57.8
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 1.9e-166 590.1 624 54.8
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 2.5e-166 589.7 622 55.8
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 4.2e-166 589.0 504 64.3
RcHm_v2.0_Chr2g0091911 Rosa chinensis HOM05D005801 ORTHO05D008555 1.8e-164 583.6 606 57.1
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 2.2e-162 576.6 592 57.1
CANSAT21G1751 Cannabis sativa HOM05D005801 ORTHO05D008555 2.0e-160 570.1 576 57.8
TAR636G1320 Trochodendron aralioides HOM05D005801 ORTHO05D008555 2.0e-160 570.1 599 55.8
Cfa003179 Carpinus fangiana HOM05D005801 ORTHO05D008555 2.7e-160 569.7 437 68.9
Manes.16G108700 Manihot esculenta HOM05D005801 ORTHO05D008555 3.5e-160 569.3 572 57.3
FAN28G2516 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.7e-159 567.0 629 55.0
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 6.5e-159 565.1 623 54.6
FvH4_1g06150 Fragaria vesca HOM05D005801 ORTHO05D008555 3.2e-158 562.8 661 52.6
CSS0008146 Camellia sinensis var. sinensis HOM05D005801 ORTHO05D008555 4.2e-158 562.4 486 65.0
FAN23G0343 Fragaria x ananassa HOM05D005801 ORTHO05D008555 3.6e-157 559.3 645 53.3
FAN19G1715 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.8e-156 557.0 662 52.3
COL.COLO4_34743 Corchorus olitorius HOM05D005801 ORTHO05D008555 2.3e-156 556.6 445 68.5
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 4.0e-156 555.8 487 63.2
Dinv36686 Davidia involucrata HOM05D005801 ORTHO05D008555 2.0e-155 553.5 575 56.5
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 4.4e-155 552.4 479 63.5
TWI63G0976 Tripterygium wilfordii HOM05D005801 ORTHO05D008555 2.2e-154 550.1 597 54.8
FAN26G1273 Fragaria x ananassa HOM05D005801 ORTHO05D008555 4.9e-154 548.9 671 51.0
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 6.3e-154 548.5 535 60.0
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 6.3e-154 548.5 474 65.0
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 1.1e-153 547.7 511 61.1
Peaxi162Scf00720g00044 Petunia axillaris HOM05D005801 ORTHO05D008555 7.0e-153 545.0 478 63.0
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 1.2e-152 544.3 523 59.3
MD02G1065700 Malus domestica HOM05D005801 ORTHO05D008555 2.0e-152 543.5 386 70.2
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 3.8e-151 539.3 493 61.9
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 1.5e-150 537.3 487 61.4
Ciclev10007826m.g Citrus clementina HOM05D005801 ORTHO05D008555 4.3e-150 535.8 597 54.4
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 1.2e-149 534.3 445 64.9
EL10Ac8g18377 Beta vulgaris HOM05D005801 ORTHO05D008555 2.1e-149 533.5 569 55.0
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 4.7e-149 532.3 472 63.8
Migut.K00541 Erythranthe guttata HOM05D005801 ORTHO05D008555 1.0e-148 531.2 538 57.1
FAN19G0317 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.0e-148 531.2 359 74.1
FAN26G1315 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.0e-148 531.2 663 51.0
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 1.0e-148 531.2 415 68.2
THA.LOC104814572 Tarenaya hassleriana HOM05D005801 ORTHO05D008555 1.4e-148 530.8 605 52.4
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 1.8e-148 530.4 536 57.6
Aqoxy7G01401 Aquilegia oxysepala HOM05D005801 ORTHO05D008555 5.2e-148 528.9 346 76.3
PGSC0003DMG400038162 Solanum tuberosum HOM05D005801 ORTHO05D008555 2.0e-147 526.9 483 59.8
Sc18g0001500 Simmondsia chinensis HOM05D005801 ORTHO05D008555 1.7e-146 523.9 563 56.1
SalBow1G2797 Salvia bowleyana HOM05D005801 ORTHO05D008555 2.2e-146 523.5 538 59.5
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 3.7e-146 522.7 483 59.4
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 2.4e-145 520.0 454 62.6
DCAR_028663 Daucus carota HOM05D005801 ORTHO05D008555 1.6e-144 517.3 507 57.6
Sed0027809 Sechium edule HOM05D005801 ORTHO05D008555 3.0e-143 513.1 573 54.3
Solyc05g017990.4 Solanum lycopersicum HOM05D005801 ORTHO05D008555 8.0e-141 505.0 497 57.5
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 8.9e-140 501.5 350 72.3
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 7.5e-139 498.4 350 72.9
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 1.3e-138 497.7 344 72.7
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 2.9e-138 496.5 364 69.8
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 1.4e-137 494.2 340 72.6
Sp3g33210 Schrenkiella parvula HOM05D005801 ORTHO05D008555 5.4e-137 492.3 422 62.6
PSO063G7511 Papaver somniferum HOM05D005801 ORTHO05D008555 7.8e-136 488.4 311 80.1
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 1.7e-135 487.3 542 55.0
unitig_46.g18397 Utricularia gibba HOM05D005801 ORTHO05D008555 1.5e-134 484.2 344 70.3
PSO832G4312 Papaver somniferum HOM05D005801 ORTHO05D008555 7.3e-134 481.9 306 79.7
MBI04_g34406_MAGBIO Magnolia biondii HOM05D005801 ORTHO05D008555 9.5e-134 481.5 347 70.9
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 2.9e-130 469.9 489 56.9
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 2.9e-130 469.9 573 51.1
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 4.9e-130 469.2 563 52.6
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 4.9e-130 469.2 563 52.6
CDE04G1187 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 4.9e-130 469.2 462 56.1
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 8.3e-130 468.4 569 51.3
ATR0681G166 Amborella trichopoda HOM05D005801 ORTHO05D008555 2.4e-129 466.8 405 59.8
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 2.1e-128 463.8 575 50.4
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 4.6e-128 462.6 343 70.6
Actinidia32650 Actinidia chinensis HOM05D005801 ORTHO05D008555 1.5e-126 457.6 314 76.1
Aa31LG8G16820 Aethionema arabicum HOM05D005801 ORTHO05D008555 4.3e-126 456.1 403 59.1
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 1.6e-125 454.1 520 52.3
SHI02689 Sapria himalayana HOM05D005801 ORTHO05D008555 5.2e-124 449.1 470 53.8
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 2.6e-123 446.8 460 54.8
AUR62021403 Chenopodium quinoa HOM05D005801 ORTHO05D008555 2.2e-122 443.7 581 48.5
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 4.9e-122 442.6 549 47.9
Cpa.g.sc40.94 Carica papaya HOM05D005801 ORTHO05D008555 1.1e-121 441.4 286 78.7
AUR62010892 Chenopodium quinoa HOM05D005801 ORTHO05D008555 5.4e-121 439.1 580 48.4
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 4.4e-115 419.5 282 77.7
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 2.2e-114 417.2 282 77.3
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 2.2e-114 417.2 282 77.3
MD15G1196600 Malus domestica HOM05D005801 ORTHO05D008555 1.1e-108 398.3 604 44.5
Lalb_Chr09g0331541 Lupinus albus HOM05D005801 ORTHO05D008555 1.0e-82 312.0 228 73.7
Mapoly0135s0034 Marchantia polymorpha HOM05D005801 ORTHO05D008555 8.8e-79 298.9 330 48.8
FvH4_1g06190 Fragaria vesca HOM05D005801 ORTHO05D008555 3.3e-78 297.0 175 82.3
Pp3c17_17180 Physcomitrium patens HOM05D005801 ORTHO05D008555 1.4e-76 291.6 331 48.6
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 3.8e-74 283.5 326 48.5
Lalb_Chr09g0331551 Lupinus albus HOM05D005801 ORTHO05D008555 2.9e-66 257.3 321 52.0
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 3.2e-65 253.8 273 50.9
Lj6C67T4 Lonicera japonica HOM05D005801 ORTHO05D008555 2.0e-59 234.6 163 73.6
CAN.G640.23 Capsicum annuum HOM05D005801 ORTHO05D008555 1.2e-51 208.8 207 57.0
Os01g0742000 Oryza sativa ssp. japonica HOM05D005801 ORTHO05D008555 5.9e-51 206.5 152 71.7
PRCOL_00003145 Prasinoderma coloniale HOM05D005801 ORTHO05D008555 1.1e-49 202.2 289 43.3
CDE02G3237 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 4.2e-49 200.3 468 34.0
MCO03G539 Micromonas commoda HOM05D005801 ORTHO05D008555 1.2e-48 198.7 302 41.4
Cre13.g566150 Chlamydomonas reinhardtii HOM05D005801 ORTHO05D008555 2.1e-48 198.0 298 39.3
CAN.G775.15 Capsicum annuum HOM05D005801 ORTHO05D008555 9.8e-46 189.1 285 42.1
HanXRQChr12g0378121 Helianthus annuus HOM05D005801 ORTHO05D008555 7.0e-36 156.4 155 53.5
CAN.G1277.2 Capsicum annuum HOM05D005801 ORTHO05D008555 3.8e-34 150.6 283 39.9
CAN.G77.3 Capsicum annuum HOM05D005801 ORTHO05D008555 8.3e-21 106.3 83 62.7
EL10Ac8g19871 Beta vulgaris HOM05D005801 ORTHO05D008555 3.2e-20 104.4 92 64.1
BcaC04g20246 Brassica carinata HOM05D005801 ORTHO05D016715 7.3e-17 93.2 73 60.3
BolC9t57462H Brassica oleracea HOM05D005801 ORTHO05D016715 7.3e-17 93.2 73 60.3
C09p45950 Brassica napus HOM05D005801 ORTHO05D016715 1.2e-16 92.4 73 58.9
A07p26140 Brassica napus HOM05D005801 ORTHO05D013666 4.0e-15 87.4 70 61.4
BraA07t30260Z Brassica rapa HOM05D005801 ORTHO05D013666 2.0e-14 85.1 70 60.0
BcaC03g16316 Brassica carinata HOM05D005801 ORTHO05D016715 1.7e-13 82.0 71 53.5
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 8.3e-13 79.7 235 30.2
C03p54440 Brassica napus HOM05D005801 ORTHO05D041341 1.1e-12 79.3 56 66.1
BolC3t17730H Brassica oleracea HOM05D005801 ORTHO05D041341 1.1e-12 79.3 56 66.1
BcaC04g22492 Brassica carinata HOM05D005801 ORTHO05D016715 2.7e-11 74.7 64 59.4
Medtr8g046830 Medicago truncatula HOM05D005801 ORTHO05D008555 6.6e-10 70.1 51 72.5
BcaB08g34890 Brassica carinata HOM05D005801 ORTHO05D008555 7.3e-09 66.6 75 56.0
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 5.2e-07 60.5 179 33.5
BcaB07g33268 Brassica carinata HOM05D005801 ORTHO05D016715 8.9e-07 59.7 76 48.7
BcaB07g33439 Brassica carinata HOM05D005801 ORTHO05D016715 1.2e-06 59.3 120 36.7


User provided reference genes

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