Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9A9DF4 Arachis hypogaea HOM05D006835 ORTHO05D008587 5.9e-77 292.0 333 100.0
arahy.Tifrunner.gnm1.ann1.N15UBW Arachis hypogaea HOM05D006835 ORTHO05D008587 5.9e-77 292.0 333 100.0
arahy.Tifrunner.gnm1.ann1.B8P5ZC Arachis hypogaea HOM05D006835 ORTHO05D008587 1.5e-64 250.8 333 94.0
arahy.Tifrunner.gnm1.ann1.ATV9YP Arachis hypogaea HOM05D006835 ORTHO05D008587 2.9e-63 246.5 333 93.4
Lj4g0005221 Lotus japonicus HOM05D006835 ORTHO05D008587 1.3e-60 237.7 328 89.9
Lalb_Chr09g0328551 Lupinus albus HOM05D006835 ORTHO05D008587 2.8e-58 229.9 328 87.2
Ca_18740_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 2.3e-57 226.9 336 86.9
Ca_30877_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 2.3e-57 226.9 336 86.9
Psat7g128400 Pisum sativum HOM05D006835 ORTHO05D008587 1.2e-56 224.6 336 83.0
Glyma.13G141500 Glycine max HOM05D006835 ORTHO05D008587 2.9e-55 219.9 336 86.9
Phvul.007G148200 Phaseolus vulgaris HOM05D006835 ORTHO05D008587 1.2e-53 214.5 327 88.7
Medtr4g084630 Medicago truncatula HOM05D006835 ORTHO05D008587 3.3e-51 206.5 329 82.1
Thecc.02G149200 Theobroma cacao HOM05D006835 ORTHO05D008587 9.5e-51 204.9 329 83.9
COL.COLO4_04808 Corchorus olitorius HOM05D006835 ORTHO05D008587 6.2e-50 202.2 329 83.9
Duzib132G0412 Durio zibethinus HOM05D006835 ORTHO05D008587 8.1e-50 201.8 329 80.5
Haze_01949 Corylus avellana HOM05D006835 ORTHO05D008587 2.3e-49 200.3 326 81.3
QL11p057002 Quercus lobata HOM05D006835 ORTHO05D008587 3.1e-49 199.9 329 82.1
Dinv41853 Davidia involucrata HOM05D006835 ORTHO05D008587 4.0e-49 199.5 326 72.1
TPR.G31217 Trifolium pratense HOM05D006835 ORTHO05D008587 4.0e-49 199.5 377 68.4
Gohir.A13G063900 Gossypium hirsutum HOM05D006835 ORTHO05D008587 6.8e-49 198.7 329 83.3
CiPaw.06G113200 Carya illinoinensis HOM05D006835 ORTHO05D008587 7.6e-48 195.3 329 66.3
Potri.004G209400 Populus trichocarpa HOM05D006835 ORTHO05D008587 1.3e-47 194.5 330 80.6
Gorai.013G065400 Gossypium raimondii HOM05D006835 ORTHO05D008587 1.7e-47 194.1 329 83.0
Gohir.D13G058000 Gossypium hirsutum HOM05D006835 ORTHO05D008587 2.2e-47 193.7 329 83.0
Manes.15G113100 Manihot esculenta HOM05D006835 ORTHO05D008587 2.2e-47 193.7 329 78.4
Sabra04G0141200 Salix brachista HOM05D006835 ORTHO05D008587 4.9e-47 192.6 332 80.7
Cc05_g09290 Coffea canephora HOM05D006835 ORTHO05D008587 8.3e-47 191.8 329 82.1
MELO3C015685.2 Cucumis melo HOM05D006835 ORTHO05D008587 5.4e-46 189.1 328 74.1
CsaV3_7G002240 Cucumis sativus L. HOM05D006835 ORTHO05D008587 1.2e-45 188.0 328 73.5
Cpa.g.sc60.7 Carica papaya HOM05D006835 ORTHO05D008587 2.1e-45 187.2 333 81.1
Atru.chr5.3592 Acer truncatum HOM05D006835 ORTHO05D008587 2.7e-45 186.8 327 82.6
Potri.009G170300 Populus trichocarpa HOM05D006835 ORTHO05D008587 2.7e-45 186.8 323 83.0
CANSAT25G2962 Cannabis sativa HOM05D006835 ORTHO05D008587 3.5e-45 186.4 328 80.8
Prupe.8G183100 Prunus persica HOM05D006835 ORTHO05D008587 3.5e-45 186.4 329 81.2
RcHm_v2.0_Chr6g0281661 Rosa chinensis HOM05D006835 ORTHO05D008587 3.5e-45 186.4 328 80.8
Ciclev10028825m.g Citrus clementina HOM05D006835 ORTHO05D008587 6.0e-45 185.7 327 79.8
ClCG02G003170 Citrullus lanatus HOM05D006835 ORTHO05D008587 7.8e-45 185.3 328 76.2
Hma1.2p1_0332F.1_g127850 Hydrangea macrophylla HOM05D006835 ORTHO05D008587 7.8e-45 185.3 326 83.1
FAN27G3385 Fragaria x ananassa HOM05D006835 ORTHO05D008587 1.3e-44 184.5 329 80.9
Rhsim12G0002300 Rhododendron simsii HOM05D006835 ORTHO05D008587 3.0e-44 183.3 324 80.6
CANSAT25G1616 Cannabis sativa HOM05D006835 ORTHO05D008587 3.9e-44 183.0 328 80.2
Peaxi162Scf00078g00114 Petunia axillaris HOM05D006835 ORTHO05D008587 5.1e-44 182.6 329 79.6
Actinidia17982 Actinidia chinensis HOM05D006835 ORTHO05D008587 1.5e-43 181.0 329 79.3
Sopen11g019950 Solanum pennellii HOM05D006835 ORTHO05D008587 2.5e-43 180.3 329 80.2
PGSC0003DMG400023133 Solanum tuberosum HOM05D006835 ORTHO05D008587 2.5e-43 180.3 329 79.9
Sed0026152 Sechium edule HOM05D006835 ORTHO05D008587 5.6e-43 179.1 328 75.0
Sed0006636 Sechium edule HOM05D006835 ORTHO05D008587 7.3e-43 178.7 328 72.9
FAN24G3450 Fragaria x ananassa HOM05D006835 ORTHO05D008587 9.6e-43 178.3 329 79.9
Glyma.10G054400 Glycine max HOM05D006835 ORTHO05D008587 1.6e-42 177.6 302 89.4
GSVIVG01023845001 Vitis vinifera HOM05D006835 ORTHO05D008587 2.1e-42 177.2 329 81.8
Eucgr.H05012 Eucalyptus grandis HOM05D006835 ORTHO05D008587 6.2e-42 175.6 328 80.2
PGR042G3426 Punica granatum HOM05D006835 ORTHO05D008587 6.2e-42 175.6 328 73.8
CAN.G430.3 Capsicum annuum HOM05D006835 ORTHO05D008587 1.8e-41 174.1 329 79.0
Solyc11g044360.3 Solanum lycopersicum HOM05D006835 ORTHO05D008587 6.8e-41 172.2 317 80.8
FvH4_2g17170 Fragaria vesca HOM05D006835 ORTHO05D008587 8.9e-41 171.8 316 81.0
MD10G1144800 Malus domestica HOM05D006835 ORTHO05D008587 1.2e-40 171.4 316 81.3
Oeu034382.1 Olea europaea HOM05D006835 ORTHO05D008587 1.2e-40 171.4 329 77.2
TWI75G0734 Tripterygium wilfordii HOM05D006835 ORTHO05D008587 1.2e-40 171.4 326 79.8
MSTRG.1776 Avicennia marina HOM05D006835 ORTHO05D008587 3.4e-40 169.9 327 81.3
MBI15_g25631_MAGBIO Magnolia biondii HOM05D006835 ORTHO05D008587 7.6e-40 168.7 329 72.3
Nn6g31561 Nelumbo nucifera HOM05D006835 ORTHO05D008587 1.7e-39 167.5 329 79.6
TPR.G38303 Trifolium pratense HOM05D006835 ORTHO05D008587 2.2e-39 167.2 334 74.6
Ah.01g010510 Amaranthus hybridus HOM05D006835 ORTHO05D008587 3.8e-39 166.4 326 79.4
Lsat_1_v5_gn_1_20201 Lactuca sativa HOM05D006835 ORTHO05D008587 6.4e-39 165.6 328 76.8
Atru.BG.81.p Acer truncatum HOM05D006835 ORTHO05D008587 8.4e-39 165.2 312 83.3
Sc08g0001990 Simmondsia chinensis HOM05D006835 ORTHO05D008587 2.4e-38 163.7 327 74.9
VMungo1309G0603 Vigna mungo HOM05D006835 ORTHO05D008587 4.2e-38 162.9 286 92.3
ECA247G0195 Erigeron canadensis HOM05D006835 ORTHO05D008587 9.3e-38 161.8 329 74.8
unitig_744.g24691 Utricularia gibba HOM05D006835 ORTHO05D008587 2.1e-37 160.6 324 76.5
EL10Ac9g21569 Beta vulgaris HOM05D006835 ORTHO05D008587 7.8e-37 158.7 326 75.8
Aqoxy6G03057 Aquilegia oxysepala HOM05D006835 ORTHO05D008587 1.7e-36 157.5 325 77.5
AUR62010216 Chenopodium quinoa HOM05D006835 ORTHO05D008587 3.0e-36 156.8 327 75.5
AUR62013212 Chenopodium quinoa HOM05D006835 ORTHO05D008587 3.0e-36 156.8 327 75.5
SalBow8G5127 Salvia bowleyana HOM05D006835 ORTHO05D008587 5.1e-36 156.0 318 74.8
Migut.E01343 Erythranthe guttata HOM05D006835 ORTHO05D008587 2.5e-35 153.7 328 74.4
Hund06347 Selenicereus undatus HOM05D006835 ORTHO05D008587 2.5e-35 153.7 326 75.5
Nitab4.5_0004387g0030 Nicotiana tabacum HOM05D006835 ORTHO05D008587 4.3e-35 152.9 329 79.0
Nitab4.5_0000079g0110 Nicotiana tabacum HOM05D006835 ORTHO05D008587 7.3e-35 152.1 329 79.0
PSO541G0957 Papaver somniferum HOM05D006835 ORTHO05D008587 2.1e-34 150.6 331 77.0
SGA_v2.0_scaffold144G35876 Striga asiatica HOM05D006835 ORTHO05D008587 8.1e-34 148.7 327 77.1
CARHR293940 Cardamine hirsuta HOM05D006835 ORTHO05D008587 1.2e-32 144.8 325 66.8
Carub.0007s0005 Capsella rubella HOM05D006835 ORTHO05D008587 5.4e-30 136.0 328 63.4
ATR0605G237 Amborella trichopoda HOM05D006835 ORTHO05D008587 1.2e-29 134.8 319 66.8
DCAR_006210 Daucus carota HOM05D006835 ORTHO05D008587 1.6e-29 134.4 322 67.4
Thhalv10004546m.g Eutrema salsugineum HOM05D006835 ORTHO05D008587 1.6e-29 134.4 321 65.7
Sp7g37590 Schrenkiella parvula HOM05D006835 ORTHO05D008587 1.6e-29 134.4 326 64.1
Lsat_1_v5_gn_8_70721 Lactuca sativa HOM05D006835 ORTHO05D008587 2.7e-29 133.7 310 76.1
AT4G38160 Arabidopsis thaliana HOM05D006835 ORTHO05D008587 3.5e-29 133.3 326 69.9
AL7G10060 Arabidopsis lyrata HOM05D006835 ORTHO05D008587 2.3e-28 130.6 321 63.9
Aa31LG6G16920 Aethionema arabicum HOM05D006835 ORTHO05D008587 3.0e-28 130.2 323 64.1
THA.LOC104806593 Tarenaya hassleriana HOM05D006835 ORTHO05D008587 3.0e-28 130.2 321 43.3
MD05G1145000 Malus domestica HOM05D006835 ORTHO05D008587 3.3e-27 126.7 302 77.8
CDE04G0383 Ceratophyllum demersum HOM05D006835 ORTHO05D008587 3.6e-26 123.2 333 51.7
CSS0014591 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 6.2e-26 122.5 305 76.1
FAN15G1646 Fragaria x ananassa HOM05D006835 ORTHO05D008587 8.1e-26 122.1 80 71.2
A03p48790 Brassica napus HOM05D006835 ORTHO05D008587 5.3e-25 119.4 331 66.8
BraA03t13979Z Brassica rapa HOM05D006835 ORTHO05D008587 5.3e-25 119.4 331 66.8
C07p46880 Brassica napus HOM05D006835 ORTHO05D008587 9.0e-25 118.6 331 66.5
BolC7t45204H Brassica oleracea HOM05D006835 ORTHO05D008587 9.0e-25 118.6 331 66.5
TAR381G0995 Trochodendron aralioides HOM05D006835 ORTHO05D008587 9.0e-25 118.6 86 65.1
Ah.02g121760 Amaranthus hybridus HOM05D006835 ORTHO05D008587 1.1e-22 111.7 86 54.7
ClCG02G010730 Citrullus lanatus HOM05D006835 ORTHO05D008587 6.0e-21 105.9 296 36.1
Os08g0515800 Oryza sativa ssp. japonica HOM05D006835 ORTHO05D008587 1.0e-20 105.1 330 58.2
CSS0013930 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 5.1e-20 102.8 65 72.3
vmacro17000 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 8.1e-18 95.5 318 41.5
SalBow3G3248 Salvia bowleyana HOM05D006835 ORTHO05D008587 4.0e-17 93.2 318 68.9
TAR381G1325 Trochodendron aralioides HOM05D006835 ORTHO05D008587 4.0e-17 93.2 57 71.9
SalBow4G0758 Salvia bowleyana HOM05D006835 ORTHO05D008587 4.5e-16 89.7 318 68.6
SEGI_34779 Sequoiadendron giganteum HOM05D006835 ORTHO05D008587 2.2e-15 87.4 60 61.7
SalBow8G1833 Salvia bowleyana HOM05D006835 ORTHO05D008587 8.4e-15 85.5 56 62.5
HPP92_022026 Vanilla planifolia HOM05D006835 ORTHO05D008587 5.1e-12 76.3 58 58.6
Mapoly0015s0200 Marchantia polymorpha HOM05D006835 ORTHO05D008587 2.1e-10 70.9 85 42.4
AagrBONN_evm.TU.Sc2ySwM_344.3279 Anthoceros agrestis HOM05D006835 ORTHO05D008587 8.2e-10 68.9 67 52.2
SEGI_18890 Sequoiadendron giganteum HOM05D006835 ORTHO05D008587 1.3e-07 61.6 42 59.5
Actinidia20590 Actinidia chinensis HOM05D006835 ORTHO05D008587 2.2e-07 60.8 40 65.0
FvH4_4g20570 Fragaria vesca HOM05D005956 ORTHO05D006468 5.0e-07 59.7 59 42.4
HanXRQChr15g0466591 Helianthus annuus HOM05D002901 ORTHO05D003183 5.0e-07 59.7 58 39.7
vmacro17159 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 1.1e-06 58.5 44 59.1
Cc07_g21430 Coffea canephora HOM05D005956 ORTHO05D007197 1.4e-06 58.2 59 42.4
FAN09G1770 Fragaria x ananassa HOM05D005956 ORTHO05D007197 1.4e-06 58.2 58 43.1
arahy.Tifrunner.gnm1.ann1.XHCR8J Arachis hypogaea HOM05D005956 ORTHO05D007197 1.9e-06 57.8 61 44.3
CANSAT25G2219 Cannabis sativa HOM05D002901 ORTHO05D003183 1.9e-06 57.8 58 37.9
Hma1.2p1_2405F.1_g321440 Hydrangea macrophylla HOM05D002901 ORTHO05D003183 2.5e-06 57.4 50 46.0
ECA247G3292 Erigeron canadensis HOM05D002901 ORTHO05D003183 3.2e-06 57.0 53 39.6
Hma1.2p1_0244F.1_g101100 Hydrangea macrophylla HOM05D002901 ORTHO05D003183 3.2e-06 57.0 50 46.0
Lsat_1_v5_gn_9_1861 Lactuca sativa HOM05D002901 ORTHO05D003183 3.2e-06 57.0 50 44.0
PGR083G0114 Punica granatum HOM05D005956 ORTHO05D007197 3.2e-06 57.0 59 40.7
FvH4_6g36600 Fragaria vesca HOM05D005956 ORTHO05D007197 4.2e-06 56.6 58 41.4
FAN02G1317 Fragaria x ananassa HOM05D005956 ORTHO05D007197 4.2e-06 56.6 58 41.4
FAN14G1696 Fragaria x ananassa HOM05D005956 ORTHO05D007197 4.2e-06 56.6 58 41.4
vmacro19244 Vaccinium macrocarpon HOM05D002901 ORTHO05D003183 4.2e-06 56.6 50 44.0
SMO353G0202 Selaginella moellendorffii HOM05D006835 ORTHO05D001299 5.5e-06 56.2 61 45.9
TPR.G21350 Trifolium pratense HOM05D005956 ORTHO05D007197 5.5e-06 56.2 61 42.6
Duzib192G0068 Durio zibethinus HOM05D005956 ORTHO05D007197 7.2e-06 55.8 57 42.1
Lsat_1_v5_gn_2_2920 Lactuca sativa HOM05D002901 ORTHO05D003183 7.2e-06 55.8 50 44.0
LjContig00155g0015255 Lotus japonicus HOM05D002901 ORTHO05D003183 7.2e-06 55.8 53 41.5
LjContig00482g0022414 Lotus japonicus HOM05D005956 ORTHO05D007197 7.2e-06 55.8 61 44.3
CAN.G790.4 Capsicum annuum HOM05D005956 ORTHO05D007197 9.3e-06 55.5 64 37.5
ClCG03G000530 Citrullus lanatus HOM05D005956 ORTHO05D007197 9.3e-06 55.5 61 39.3


User provided reference genes

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