Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 1.7e-207 726.5 601 100.0
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 2.1e-80 304.3 364 64.8
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 1.4e-79 301.6 365 63.0
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 1.1e-78 298.5 364 61.3
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 1.9e-78 297.7 362 66.3
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 5.7e-78 296.2 364 55.5
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 1.3e-77 295.0 363 58.1
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 1.1e-76 292.0 386 66.3
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 5.3e-76 289.7 365 56.7
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.5e-75 288.1 360 59.2
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 1.5e-75 288.1 365 71.2
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 1.0e-74 285.4 364 62.4
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 6.5e-74 282.7 364 57.1
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 6.5e-74 282.7 363 65.3
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 7.2e-73 279.3 363 57.6
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 1.2e-72 278.5 361 56.0
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 2.1e-72 277.7 364 54.7
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 6.1e-72 276.2 363 56.7
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 7.9e-72 275.8 379 54.9
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 1.0e-71 275.4 375 61.1
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 2.3e-71 274.2 373 66.0
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 3.9e-71 273.5 363 49.9
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 3.9e-71 273.5 362 54.7
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 5.1e-71 273.1 363 60.9
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 1.1e-70 271.9 386 58.8
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 1.1e-70 271.9 365 59.7
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 2.0e-70 271.2 363 68.6
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 2.6e-70 270.8 362 63.5
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 1.7e-69 268.1 370 65.4
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 3.7e-69 266.9 384 59.6
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 4.8e-69 266.5 362 59.9
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 8.2e-69 265.8 363 54.5
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 1.4e-68 265.0 381 58.0
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 1.5e-67 261.5 362 48.3
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 3.4e-67 260.4 364 54.4
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 5.9e-67 259.6 364 54.9
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 1.0e-66 258.8 381 55.9
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 3.8e-66 256.9 363 57.3
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 3.8e-66 256.9 356 57.9
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 5.0e-66 256.5 361 53.7
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 1.4e-65 255.0 351 54.1
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 1.9e-65 254.6 362 59.7
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 4.2e-65 253.4 359 59.3
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 7.2e-65 252.7 375 64.3
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 9.4e-65 252.3 355 67.0
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 9.4e-65 252.3 355 67.0
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 2.7e-64 250.8 361 52.9
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 2.7e-64 250.8 382 50.5
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 4.7e-64 250.0 375 48.5
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 4.7e-64 250.0 357 58.3
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 1.8e-63 248.1 382 52.1
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 1.8e-63 248.1 383 55.6
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 5.2e-63 246.5 360 63.6
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 6.7e-63 246.1 367 49.3
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 6.7e-63 246.1 365 60.3
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 1.1e-62 245.4 365 52.6
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 1.5e-62 245.0 359 55.4
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 2.0e-62 244.6 374 63.6
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 2.6e-62 244.2 364 47.8
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 3.3e-62 243.8 362 45.9
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 7.4e-62 242.7 366 65.3
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 2.8e-61 240.7 369 51.5
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 4.8e-61 240.0 404 47.8
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 4.8e-61 240.0 391 51.9
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 8.2e-61 239.2 361 60.4
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 1.1e-60 238.8 362 57.2
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 3.1e-60 237.3 364 42.9
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 5.3e-60 236.5 360 45.8
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 7.0e-60 236.1 360 50.0
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 9.1e-60 235.7 364 42.0
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 9.1e-60 235.7 253 64.8
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 1.2e-59 235.3 361 48.5
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.2e-59 235.3 363 62.3
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 2.0e-59 234.6 361 48.2
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 2.0e-59 234.6 362 62.4
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 2.6e-59 234.2 364 50.5
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 4.5e-59 233.4 361 47.1
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 5.9e-59 233.0 364 59.6
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 1.3e-58 231.9 383 51.2
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 1.7e-58 231.5 371 58.2
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 2.2e-58 231.1 358 48.9
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 2.2e-58 231.1 258 55.0
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 2.9e-58 230.7 372 56.5
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.8e-58 230.3 360 55.0
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 8.5e-58 229.2 357 46.5
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 1.1e-57 228.8 363 53.4
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.1e-57 228.8 363 54.3
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 1.5e-57 228.4 358 48.3
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 2.5e-57 227.6 359 46.2
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 7.2e-57 226.1 358 44.4
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.0e-55 222.2 362 55.2
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.0e-55 222.2 362 55.2
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 1.4e-55 221.9 357 52.1
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 2.3e-55 221.1 362 56.4
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 2.3e-55 221.1 361 66.2
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 3.0e-55 220.7 358 49.2
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 3.0e-55 220.7 291 55.7
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 4.0e-55 220.3 372 56.5
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 5.2e-55 219.9 361 57.6
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 5.2e-55 219.9 363 65.6
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 6.7e-55 219.5 362 54.7
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 1.2e-54 218.8 360 46.4
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 1.2e-54 218.8 400 42.8
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 1.5e-54 218.4 378 54.0
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.5e-54 218.4 363 65.0
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 2.0e-54 218.0 427 48.5
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 4.4e-54 216.9 366 56.0
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 4.4e-54 216.9 365 47.7
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 1.3e-53 215.3 357 50.4
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 2.8e-53 214.2 362 51.4
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 8.2e-53 212.6 396 54.5
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 1.4e-52 211.8 363 65.0
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 1.4e-52 211.8 394 54.6
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 2.0e-51 208.0 365 46.0
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 1.7e-50 204.9 247 58.7
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 3.8e-50 203.8 357 64.4
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 6.5e-50 203.0 367 50.1
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 1.1e-49 202.2 367 39.0
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 4.2e-49 200.3 181 62.4
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 4.2e-49 200.3 361 48.5
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 1.2e-48 198.7 370 42.2
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 2.1e-48 198.0 373 48.5
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 2.1e-48 198.0 390 53.6
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 1.0e-47 195.7 144 68.1
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 1.4e-47 195.3 253 53.0
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 1.8e-47 194.9 401 46.1
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 5.2e-47 193.4 363 46.3
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 5.7e-46 189.9 241 53.5
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 3.7e-45 187.2 363 56.7
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 4.5e-43 180.3 251 59.8
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 3.8e-42 177.2 362 46.4
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.5e-41 175.3 362 45.3
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 4.0e-39 167.2 143 58.7
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 2.0e-38 164.9 137 61.3
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 3.4e-38 164.1 138 60.1
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 1.3e-37 162.2 138 58.7
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 6.3e-37 159.8 324 42.9
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 8.3e-37 159.5 147 57.8
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 7.0e-36 156.4 259 49.4
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 2.9e-34 151.0 294 46.9
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 3.7e-29 134.0 264 48.5
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 4.9e-29 133.7 268 39.2
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 1.3e-26 125.6 284 37.0
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 1.2e-22 112.5 103 57.3
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 1.5e-22 112.1 157 56.7
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 3.4e-22 110.9 88 65.9
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 6.4e-21 106.7 287 34.5
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 7.0e-20 103.2 53 84.9
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 2.1e-16 91.7 252 43.7
MCO15G578 Micromonas commoda HOM05D002034 ORTHO05D000124 8.9e-15 86.3 82 46.3
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 5.4e-12 77.0 140 40.0
Nn1g04222 Nelumbo nucifera HOM05D002034 ORTHO05D006399 3.5e-11 74.3 151 49.7
CBR_g224 Chara braunii HOM05D005264 ORTHO05D005428 2.4e-07 61.6 40 60.0
Mapoly0154s0004 Marchantia polymorpha HOM05D005264 ORTHO05D005428 5.8e-06 57.0 38 57.9
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 7.6e-06 56.6 40 60.0
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 9.9e-06 56.2 31 67.7


User provided reference genes

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