Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.98I7BY Arachis hypogaea HOM05D003066 ORTHO05D018497 5.4e-52 207.2 94 100.0
arahy.Tifrunner.gnm1.ann1.A9LG26 Arachis hypogaea HOM05D003066 ORTHO05D018497 4.3e-33 144.4 67 95.5
Psat6g020400 Pisum sativum HOM05D003066 ORTHO05D004162 2.1e-24 115.5 61 88.5
Ca_13165_v3 Cicer arietinum L. HOM05D003066 ORTHO05D004162 3.7e-24 114.8 61 88.5
arahy.Tifrunner.gnm1.ann1.9IV7G6 Arachis hypogaea HOM05D003066 ORTHO05D004162 4.8e-24 114.4 61 88.5
arahy.Tifrunner.gnm1.ann1.W9U8CY Arachis hypogaea HOM05D003066 ORTHO05D004162 4.8e-24 114.4 61 88.5
Lj5g0020573 Lotus japonicus HOM05D003066 ORTHO05D004162 4.8e-24 114.4 61 88.5
Medtr1g016230 Medicago truncatula HOM05D003066 ORTHO05D004162 8.2e-24 113.6 61 86.9
Aqoxy7G01226 Aquilegia oxysepala HOM05D003066 ORTHO05D004162 1.8e-23 112.5 61 85.2
CiPaw.15G039000 Carya illinoinensis HOM05D003066 ORTHO05D004162 1.8e-23 112.5 61 86.9
COL.COLO4_21057 Corchorus olitorius HOM05D003066 ORTHO05D004162 1.8e-23 112.5 61 86.9
Duzib150G0748 Durio zibethinus HOM05D003066 ORTHO05D004162 1.8e-23 112.5 61 85.2
TPR.G13011 Trifolium pratense HOM05D003066 ORTHO05D004162 1.8e-23 112.5 61 85.2
Sp7g30770 Schrenkiella parvula HOM05D003066 ORTHO05D004162 2.4e-23 112.1 61 85.2
CANSAT25G3853 Cannabis sativa HOM05D003066 ORTHO05D004162 3.1e-23 111.7 61 85.2
CARHR241020 Cardamine hirsuta HOM05D003066 ORTHO05D004162 3.1e-23 111.7 61 85.2
DCAR_003129 Daucus carota HOM05D003066 ORTHO05D004162 3.1e-23 111.7 61 83.6
Glyma.17G228800 Glycine max HOM05D003066 ORTHO05D004162 3.1e-23 111.7 61 85.2
Gohir.A05G042300 Gossypium hirsutum HOM05D003066 ORTHO05D004162 3.1e-23 111.7 60 86.7
Gohir.D05G044000 Gossypium hirsutum HOM05D003066 ORTHO05D004162 3.1e-23 111.7 60 86.7
Gorai.009G045100 Gossypium raimondii HOM05D003066 ORTHO05D004162 3.1e-23 111.7 60 86.7
AL7G18660 Arabidopsis lyrata HOM05D003066 ORTHO05D004162 4.0e-23 111.3 61 85.2
AT4G33010 Arabidopsis thaliana HOM05D003066 ORTHO05D004162 4.0e-23 111.3 61 85.2
Lalb_Chr14g0367671 Lupinus albus HOM05D003066 ORTHO05D004162 4.0e-23 111.3 61 85.2
SalBow1G0202 Salvia bowleyana HOM05D003066 ORTHO05D004162 4.0e-23 111.3 60 86.7
THA.LOC104799166 Tarenaya hassleriana HOM05D003066 ORTHO05D004162 6.9e-23 110.5 60 85.0
GSVIVG01035408001 Vitis vinifera HOM05D003066 ORTHO05D004162 6.9e-23 110.5 60 85.0
Glyma.14G094700 Glycine max HOM05D003066 ORTHO05D004162 9.0e-23 110.2 61 83.6
Gohir.D06G087600 Gossypium hirsutum HOM05D003066 ORTHO05D004162 9.0e-23 110.2 61 83.6
Gorai.010G101200 Gossypium raimondii HOM05D003066 ORTHO05D004162 9.0e-23 110.2 61 83.6
Haze_18191 Corylus avellana HOM05D003066 ORTHO05D004162 1.2e-22 109.8 61 83.6
THA.LOC104803730 Tarenaya hassleriana HOM05D003066 ORTHO05D004162 1.2e-22 109.8 61 83.6
VMungo0647G0915 Vigna mungo HOM05D003066 ORTHO05D004162 1.2e-22 109.8 61 83.6
Cpa.g.sc7.178 Carica papaya HOM05D003066 ORTHO05D004162 1.5e-22 109.4 60 85.0
Thhalv10024257m.g Eutrema salsugineum HOM05D003066 ORTHO05D004162 1.5e-22 109.4 61 83.6
MD08G1061500 Malus domestica HOM05D003066 ORTHO05D004162 1.5e-22 109.4 60 85.0
vmacro00142 Vaccinium macrocarpon HOM05D003066 ORTHO05D004162 1.5e-22 109.4 61 82.0
ECA240G4675 Erigeron canadensis HOM05D003066 ORTHO05D004162 2.0e-22 109.0 61 78.7
FAN20G2891 Fragaria x ananassa HOM05D003066 ORTHO05D004162 2.0e-22 109.0 60 83.3
FAN27G1891 Fragaria x ananassa HOM05D003066 ORTHO05D004162 2.0e-22 109.0 60 83.3
Duzib187G0606 Durio zibethinus HOM05D003066 ORTHO05D004162 2.6e-22 108.6 61 82.0
Aa31LG5G9680 Aethionema arabicum HOM05D003066 ORTHO05D004162 3.4e-22 108.2 61 82.0
Carub.0004s0590 Capsella rubella HOM05D003066 ORTHO05D004162 3.4e-22 108.2 61 82.0
Eucgr.C00646 Eucalyptus grandis HOM05D003066 ORTHO05D004162 3.4e-22 108.2 61 82.0
Carub.0007s0747 Capsella rubella HOM05D003066 ORTHO05D004162 4.5e-22 107.8 61 82.0
FvH4_2g31940 Fragaria vesca HOM05D003066 ORTHO05D004162 4.5e-22 107.8 60 81.7
FAN24G0169 Fragaria x ananassa HOM05D003066 ORTHO05D004162 4.5e-22 107.8 60 81.7
Lsat_1_v5_gn_5_45900 Lactuca sativa HOM05D003066 ORTHO05D004162 4.5e-22 107.8 61 78.7
MD15G1060200 Malus domestica HOM05D003066 ORTHO05D004162 4.5e-22 107.8 60 83.3
QL02p001223 Quercus lobata HOM05D003066 ORTHO05D004162 4.5e-22 107.8 61 82.0
Cfa017953 Carpinus fangiana HOM05D003066 ORTHO05D004162 5.8e-22 107.5 61 82.0
ECA246G1238 Erigeron canadensis HOM05D003066 ORTHO05D004162 5.8e-22 107.5 61 80.3
FAN15G2565 Fragaria x ananassa HOM05D003066 ORTHO05D004162 5.8e-22 107.5 60 81.7
Gohir.A06G089300 Gossypium hirsutum HOM05D003066 ORTHO05D004162 5.8e-22 107.5 61 82.0
Phvul.001G035500 Phaseolus vulgaris HOM05D003066 ORTHO05D004162 5.8e-22 107.5 61 78.7
Thecc.09G053700 Theobroma cacao HOM05D003066 ORTHO05D004162 5.8e-22 107.5 60 83.3
Dinv22899 Davidia involucrata HOM05D003066 ORTHO05D004162 7.6e-22 107.1 61 82.0
HanXRQChr06g0173861 Helianthus annuus HOM05D003066 ORTHO05D004162 7.6e-22 107.1 61 80.3
Lsat_1_v5_gn_3_24441 Lactuca sativa HOM05D003066 ORTHO05D004162 7.6e-22 107.1 61 78.7
Manes.16G080300 Manihot esculenta HOM05D003066 ORTHO05D004162 7.6e-22 107.1 60 80.0
SGA_v2.0_scaffold163G38030 Striga asiatica HOM05D003066 ORTHO05D004162 7.6e-22 107.1 61 80.3
AL4G18230 Arabidopsis lyrata HOM05D003066 ORTHO05D004162 1.0e-21 106.7 61 80.3
AT2G26080 Arabidopsis thaliana HOM05D003066 ORTHO05D004162 1.0e-21 106.7 61 80.3
Thhalv10001891m.g Eutrema salsugineum HOM05D003066 ORTHO05D004162 1.0e-21 106.7 61 80.3
Nn8g38884 Nelumbo nucifera HOM05D003066 ORTHO05D004162 1.0e-21 106.7 61 80.3
Rhsim11G0044200 Rhododendron simsii HOM05D003066 ORTHO05D004162 1.0e-21 106.7 61 80.3
Sabra06G0177800 Salix brachista HOM05D003066 ORTHO05D004162 1.0e-21 106.7 60 81.7
Sp4g05960 Schrenkiella parvula HOM05D003066 ORTHO05D004162 1.0e-21 106.7 61 82.0
SGA_v2.0_scaffold169G38693 Striga asiatica HOM05D003066 ORTHO05D004162 1.0e-21 106.7 61 80.3
CAN.G208.91 Capsicum annuum HOM05D003066 ORTHO05D004162 1.3e-21 106.3 61 80.3
AUR62009150 Chenopodium quinoa HOM05D003066 ORTHO05D004162 1.3e-21 106.3 61 80.3
Hma1.2p1_0482F.1_g162430 Hydrangea macrophylla HOM05D003066 ORTHO05D004162 1.3e-21 106.3 61 80.3
Lj7C271T2 Lonicera japonica HOM05D003066 ORTHO05D004162 1.3e-21 106.3 60 81.7
Lj7C275T3 Lonicera japonica HOM05D003066 ORTHO05D004162 1.3e-21 106.3 60 81.7
Peaxi162Scf00477g00214 Petunia axillaris HOM05D003066 ORTHO05D004162 1.3e-21 106.3 61 78.7
Potri.006G229300 Populus trichocarpa HOM05D003066 ORTHO05D004162 1.7e-21 105.9 60 80.0
Migut.E01566 Erythranthe guttata HOM05D003066 ORTHO05D004162 2.2e-21 105.5 61 78.7
PGR031G0611 Punica granatum HOM05D003066 ORTHO05D004162 2.2e-21 105.5 61 80.3
Hund19452 Selenicereus undatus HOM05D003066 ORTHO05D004162 2.2e-21 105.5 63 76.2
GSVIVG01015211001 Vitis vinifera HOM05D003066 ORTHO05D004162 2.2e-21 105.5 61 80.3
Dinv27984 Davidia involucrata HOM05D003066 ORTHO05D004162 2.9e-21 105.1 61 78.7
Glyma.04G051200 Glycine max HOM05D003066 ORTHO05D004162 2.9e-21 105.1 61 82.0
Glyma.06G052100 Glycine max HOM05D003066 ORTHO05D004162 2.9e-21 105.1 61 82.0
HanXRQChr17g0538191 Helianthus annuus HOM05D003066 ORTHO05D004162 2.9e-21 105.1 61 78.7
Oeu003985.1 Olea europaea HOM05D003066 ORTHO05D004162 2.9e-21 105.1 61 75.4
RcHm_v2.0_Chr6g0310901 Rosa chinensis HOM05D003066 ORTHO05D004162 2.9e-21 105.1 60 80.0
Hund03339 Selenicereus undatus HOM05D003066 ORTHO05D004162 2.9e-21 105.1 61 78.7
vmacro14247 Vaccinium macrocarpon HOM05D003066 ORTHO05D004162 2.9e-21 105.1 60 80.0
EL10Ac2g03886 Beta vulgaris HOM05D003066 ORTHO05D004162 3.8e-21 104.8 61 80.3
CARHR114810 Cardamine hirsuta HOM05D003066 ORTHO05D004162 3.8e-21 104.8 61 80.3
Duzib168G0564 Durio zibethinus HOM05D003066 ORTHO05D004162 3.8e-21 104.8 61 80.3
Nitab4.5_0001367g0020 Nicotiana tabacum HOM05D003066 ORTHO05D004162 3.8e-21 104.8 61 80.3
Nitab4.5_0003627g0010 Nicotiana tabacum HOM05D003066 ORTHO05D004162 3.8e-21 104.8 61 80.3
TAR626G0016 Trochodendron aralioides HOM05D003066 ORTHO05D004162 3.8e-21 104.8 61 80.3
Atru.chr7.1062 Acer truncatum HOM05D003066 ORTHO05D004162 4.9e-21 104.4 60 80.0
MSTRG.14054 Avicennia marina HOM05D003066 ORTHO05D004162 4.9e-21 104.4 60 78.3
AUR62022077 Chenopodium quinoa HOM05D003066 ORTHO05D004162 4.9e-21 104.4 61 78.7
MELO3C010754.2 Cucumis melo HOM05D003066 ORTHO05D004162 4.9e-21 104.4 61 77.0
Prupe.1G412100 Prunus persica HOM05D003066 ORTHO05D004162 4.9e-21 104.4 60 80.0
ATR0749G006 Amborella trichopoda HOM05D003066 ORTHO05D004162 6.5e-21 104.0 61 77.0
Ciclev10007310m.g Citrus clementina HOM05D003066 ORTHO05D004162 6.5e-21 104.0 60 80.0
Eucgr.C03047 Eucalyptus grandis HOM05D003066 ORTHO05D004162 6.5e-21 104.0 61 78.7
Lalb_Chr23g0267761 Lupinus albus HOM05D003066 ORTHO05D004162 6.5e-21 104.0 60 80.0
TWI34G1165 Tripterygium wilfordii HOM05D003066 ORTHO05D004162 6.5e-21 104.0 60 80.0
TAR383G0156 Trochodendron aralioides HOM05D003066 ORTHO05D004162 6.5e-21 104.0 61 78.7
unitig_26.g9798 Utricularia gibba HOM05D003066 ORTHO05D004162 6.5e-21 104.0 61 77.0
unitig_749.g13830 Utricularia gibba HOM05D003066 ORTHO05D004162 6.5e-21 104.0 61 77.0
Migut.A00136 Erythranthe guttata HOM05D003066 ORTHO05D004162 8.4e-21 103.6 61 77.0
Rhsim07G0142300 Rhododendron simsii HOM05D003066 ORTHO05D004162 8.4e-21 103.6 60 78.3
CsaV3_2G025570 Cucumis sativus L. HOM05D003066 ORTHO05D004162 1.1e-20 103.2 61 75.4
HanXRQChr13g0410471 Helianthus annuus HOM05D003066 ORTHO05D004162 1.1e-20 103.2 61 75.4
PSO210G2602 Papaver somniferum HOM05D003066 ORTHO05D004162 1.1e-20 103.2 61 77.0
PSO210G3975 Papaver somniferum HOM05D003066 ORTHO05D004162 1.1e-20 103.2 61 77.0
Sed0010471 Sechium edule HOM05D003066 ORTHO05D004162 1.1e-20 103.2 61 77.0
TWI32G0839 Tripterygium wilfordii HOM05D003066 ORTHO05D004162 1.1e-20 103.2 60 78.3
QL02p062818 Quercus lobata HOM05D003066 ORTHO05D004162 1.4e-20 102.8 61 78.7
CSS0003286 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 1.9e-20 102.4 60 78.3
CSS0010005 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 1.9e-20 102.4 60 78.3
ClCG08G017010 Citrullus lanatus HOM05D003066 ORTHO05D004162 1.9e-20 102.4 61 75.4
Solyc08g065220.3 Solanum lycopersicum HOM05D003066 ORTHO05D004162 1.9e-20 102.4 61 78.7
Sopen08g018830 Solanum pennellii HOM05D003066 ORTHO05D004162 1.9e-20 102.4 61 78.7
PGSC0003DMG400029938 Solanum tuberosum HOM05D003066 ORTHO05D004162 1.9e-20 102.4 61 78.7
VMungo1309G0513 Vigna mungo HOM05D003066 ORTHO05D004162 1.9e-20 102.4 61 78.7
Ah.10g034390 Amaranthus hybridus HOM05D003066 ORTHO05D004162 2.5e-20 102.1 60 78.3
CSS0005439 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 2.5e-20 102.1 60 76.7
Phvul.009G077400 Phaseolus vulgaris HOM05D003066 ORTHO05D004162 4.2e-20 101.3 61 77.0
CAN.G117.1 Capsicum annuum HOM05D003066 ORTHO05D004162 5.5e-20 100.9 60 78.3
CDE07G0857 Ceratophyllum demersum HOM05D003066 ORTHO05D004162 5.5e-20 100.9 60 76.7
MBI04_g34129_MAGBIO Magnolia biondii HOM05D003066 ORTHO05D004162 5.5e-20 100.9 61 77.0
C01p05670 Brassica napus HOM05D003066 ORTHO05D004162 7.1e-20 100.5 60 76.7
BolC1t00546H Brassica oleracea HOM05D003066 ORTHO05D004162 7.1e-20 100.5 60 76.7
CSS0037920 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 7.1e-20 100.5 60 75.0
CDE06G2405 Ceratophyllum demersum HOM05D003066 ORTHO05D004162 7.1e-20 100.5 60 76.7
MBI01_g09957_MAGBIO Magnolia biondii HOM05D003066 ORTHO05D004162 7.1e-20 100.5 61 75.4
Sc09g0009820 Simmondsia chinensis HOM05D003066 ORTHO05D004162 7.1e-20 100.5 60 75.0
BcaC09g52098 Brassica carinata HOM05D003066 ORTHO05D004162 9.3e-20 100.1 60 76.7
A01p05180 Brassica napus HOM05D003066 ORTHO05D004162 9.3e-20 100.1 60 76.7
BraA01t00501Z Brassica rapa HOM05D003066 ORTHO05D004162 9.3e-20 100.1 60 76.7
Cc08_g10590 Coffea canephora HOM05D003066 ORTHO05D004162 9.3e-20 100.1 60 76.7
HPP92_006466 Vanilla planifolia HOM05D003066 ORTHO05D004162 9.3e-20 100.1 61 77.0
MSTRG.1683 Avicennia marina HOM05D003066 ORTHO05D004162 2.7e-19 98.6 61 72.1
Zm00001eb406880 Zea mays HOM05D003066 ORTHO05D004162 4.6e-19 97.8 60 73.3
Mapoly0068s0042 Marchantia polymorpha HOM05D003066 ORTHO05D004162 1.0e-18 96.7 60 71.7
Os06g0611900 Oryza sativa ssp. japonica HOM05D003066 ORTHO05D004162 1.8e-18 95.9 60 71.7
SEGI_37657 Sequoiadendron giganteum HOM05D003066 ORTHO05D004162 2.3e-18 95.5 60 73.3
Pp3c16_4520 Physcomitrium patens HOM05D003066 ORTHO05D004162 3.0e-18 95.1 61 72.1
Pp3c16_4550 Physcomitrium patens HOM05D003066 ORTHO05D004162 3.0e-18 95.1 61 72.1
SEGI_16222 Sequoiadendron giganteum HOM05D003066 ORTHO05D004162 5.1e-18 94.4 60 71.7
Pp3c27_5030 Physcomitrium patens HOM05D003066 ORTHO05D004162 8.7e-18 93.6 61 70.5
SMO201G0119 Selaginella moellendorffii HOM05D003066 ORTHO05D004162 3.7e-16 88.2 59 69.5
CBR_g3314 Chara braunii HOM05D003066 ORTHO05D004162 4.1e-15 84.7 60 63.3
arahy.Tifrunner.gnm1.ann1.0K3GJ6 Arachis hypogaea HOM05D003066 ORTHO05D018497 5.3e-15 84.3 41 95.1
arahy.Tifrunner.gnm1.ann1.VTG82A Arachis hypogaea HOM05D003066 ORTHO05D018497 9.0e-15 83.6 46 82.6
PRCOL_00000289 Prasinoderma coloniale HOM05D003066 ORTHO05D004162 9.0e-15 83.6 60 60.0
Oeu009352.1 Olea europaea HOM05D003066 ORTHO05D004162 2.6e-14 82.0 57 64.9
MCO15G616 Micromonas commoda HOM05D003066 ORTHO05D004162 8.5e-13 77.0 60 56.7
Cre12.g534800 Chlamydomonas reinhardtii HOM05D003066 ORTHO05D004162 1.4e-12 76.3 61 54.1
Hma1.2p1_1957F.1_g309050 Hydrangea macrophylla HOM05D003066 ORTHO05D004162 1.4e-12 76.3 61 62.3
arahy.Tifrunner.gnm1.ann1.ET6FP5 Arachis hypogaea HOM05D003066 ORTHO05D018497 2.5e-12 75.5 43 83.7
arahy.Tifrunner.gnm1.ann1.J6ZNZP Arachis hypogaea HOM05D003066 ORTHO05D018497 2.7e-11 72.0 43 81.4
Lsat_1_v5_gn_6_76321 Lactuca sativa HOM05D003066 ORTHO05D018497 2.3e-10 68.9 56 64.3
Haze_27049 Corylus avellana HOM05D003066 ORTHO05D004162 1.1e-09 66.6 59 49.2
Cfa026270 Carpinus fangiana HOM05D003066 ORTHO05D004162 3.3e-09 65.1 59 50.8
Actinidia18187 Actinidia chinensis HOM05D003066 ORTHO05D004162 8.2e-08 60.5 33 78.8
CAN.G6.14 Capsicum annuum HOM05D003066 ORTHO05D018497 2.4e-07 58.9 43 67.4
arahy.Tifrunner.gnm1.ann1.JUU20C Arachis hypogaea HOM05D003066 ORTHO05D012067 2.6e-06 55.5 40 70.0
arahy.Tifrunner.gnm1.ann1.Z4L9BT Arachis hypogaea HOM05D003066 ORTHO05D012067 2.6e-06 55.5 40 70.0


User provided reference genes

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