Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.96EVWK Arachis hypogaea HOM05D007625 ORTHO05D009738 7.3e-158 560.5 273 100.0
arahy.Tifrunner.gnm1.ann1.QKB3E6 Arachis hypogaea HOM05D007625 ORTHO05D009738 4.0e-156 554.7 273 98.5
Lj4g0027770 Lotus japonicus HOM05D007625 ORTHO05D009738 9.0e-124 447.2 260 83.8
VMungo1215G1867 Vigna mungo HOM05D007625 ORTHO05D009738 2.8e-117 425.6 260 78.5
Glyma.07G247900 Glycine max HOM05D007625 ORTHO05D009738 3.7e-117 425.2 260 78.8
Lalb_Chr13g0303611 Lupinus albus HOM05D007625 ORTHO05D009738 3.7e-117 425.2 267 77.5
Medtr4g119840 Medicago truncatula HOM05D007625 ORTHO05D009738 4.8e-117 424.9 265 77.4
Ca_21505_v3 Cicer arietinum L. HOM05D007625 ORTHO05D009738 1.1e-116 423.7 262 76.7
TPR.G3171 Trifolium pratense HOM05D007625 ORTHO05D009738 3.8e-114 415.2 259 77.6
Phvul.003G105100 Phaseolus vulgaris HOM05D007625 ORTHO05D009738 5.0e-114 414.8 261 76.2
Psat4g025880 Pisum sativum HOM05D007625 ORTHO05D009738 3.2e-113 412.1 260 76.9
Ciclev10005679m.g Citrus clementina HOM05D007625 ORTHO05D009738 1.0e-103 380.6 261 69.0
Atru.chr4.2832 Acer truncatum HOM05D007625 ORTHO05D009738 8.8e-103 377.5 265 67.5
CSS0007271 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 9.7e-102 374.0 260 68.1
Actinidia00027 Actinidia chinensis HOM05D007625 ORTHO05D009738 1.3e-101 373.6 260 65.8
TWI09G0101 Tripterygium wilfordii HOM05D007625 ORTHO05D009738 8.2e-101 370.9 258 68.6
CANSAT78G1499 Cannabis sativa HOM05D007625 ORTHO05D009738 1.4e-100 370.2 267 65.9
QL06p008815 Quercus lobata HOM05D007625 ORTHO05D009738 2.4e-100 369.4 260 69.6
GSVIVG01017755001 Vitis vinifera HOM05D007625 ORTHO05D009738 2.4e-100 369.4 251 71.3
TAR633G2367 Trochodendron aralioides HOM05D007625 ORTHO05D009738 4.1e-100 368.6 259 68.0
Thecc.04G284200 Theobroma cacao HOM05D007625 ORTHO05D009738 9.1e-100 367.5 258 67.4
MD13G1169000 Malus domestica HOM05D007625 ORTHO05D009738 3.5e-99 365.5 265 66.0
SGA_v2.0_scaffold428G51521 Striga asiatica HOM05D007625 ORTHO05D009738 2.2e-98 362.8 265 64.5
Rhsim02G0009500 Rhododendron simsii HOM05D007625 ORTHO05D009738 5.0e-98 361.7 258 66.7
RcHm_v2.0_Chr4g0422131 Rosa chinensis HOM05D007625 ORTHO05D009738 5.0e-98 361.7 258 66.7
Prupe.1G137400 Prunus persica HOM05D007625 ORTHO05D009738 1.1e-97 360.5 267 66.7
FAN07G2640 Fragaria x ananassa HOM05D007625 ORTHO05D009738 7.2e-97 357.8 257 66.1
Sp3g14890 Schrenkiella parvula HOM05D007625 ORTHO05D009738 7.2e-97 357.8 260 65.8
BcaB06g25757 Brassica carinata HOM05D007625 ORTHO05D009738 2.1e-96 356.3 260 65.0
Manes.03G194700 Manihot esculenta HOM05D007625 ORTHO05D009738 3.6e-96 355.5 264 68.6
Duzib212G0442 Durio zibethinus HOM05D007625 ORTHO05D009738 4.7e-96 355.1 258 65.5
PGR031G0588 Punica granatum HOM05D007625 ORTHO05D009738 8.0e-96 354.4 258 64.3
Sabra10G0014200 Salix brachista HOM05D007625 ORTHO05D009738 1.0e-95 354.0 261 67.0
Aqoxy2G02997 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 1.4e-95 353.6 265 63.8
FvH4_4g17960 Fragaria vesca HOM05D007625 ORTHO05D009738 1.8e-95 353.2 257 65.4
Gohir.A09G239300 Gossypium hirsutum HOM05D007625 ORTHO05D009738 1.8e-95 353.2 258 64.3
BraA05t22123Z Brassica rapa HOM05D007625 ORTHO05D009738 3.0e-95 352.4 280 61.8
Thhalv10021369m.g Eutrema salsugineum HOM05D007625 ORTHO05D009738 6.7e-95 351.3 260 64.6
Cc03_g01990 Coffea canephora HOM05D007625 ORTHO05D009738 2.0e-94 349.7 250 68.8
BolC5t33727H Brassica oleracea HOM05D007625 ORTHO05D009738 5.7e-94 348.2 280 60.7
CSS0032939 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 9.7e-94 347.4 279 61.3
Gohir.D09G240200 Gossypium hirsutum HOM05D007625 ORTHO05D009738 1.7e-93 346.7 260 63.8
DCAR_027078 Daucus carota HOM05D007625 ORTHO05D009738 2.2e-93 346.3 260 65.8
Migut.N00092 Erythranthe guttata HOM05D007625 ORTHO05D009738 2.8e-93 345.9 265 63.4
AL3G29430 Arabidopsis lyrata HOM05D007625 ORTHO05D009738 3.7e-93 345.5 260 62.7
CARHR091770 Cardamine hirsuta HOM05D007625 ORTHO05D009738 3.7e-93 345.5 260 63.1
ECA240G3588 Erigeron canadensis HOM05D007625 ORTHO05D009738 1.1e-92 344.0 265 63.4
MBI18_g04687_MAGBIO Magnolia biondii HOM05D007625 ORTHO05D009738 2.4e-92 342.8 258 63.2
C05p49750 Brassica napus HOM05D007625 ORTHO05D009738 3.1e-92 342.4 271 62.0
Lsat_1_v5_gn_5_53001 Lactuca sativa HOM05D007625 ORTHO05D009738 1.6e-91 340.1 256 64.5
Potri.010G024900 Populus trichocarpa HOM05D007625 ORTHO05D009738 2.7e-91 339.3 249 66.7
Rhsim02G0010500 Rhododendron simsii HOM05D007625 ORTHO05D009738 1.0e-90 337.4 247 64.8
HanXRQChr03g0080751 Helianthus annuus HOM05D007625 ORTHO05D009738 1.3e-90 337.0 260 61.5
FAN17G2144 Fragaria x ananassa HOM05D007625 ORTHO05D009738 2.2e-90 336.3 283 60.1
FAN12G1696 Fragaria x ananassa HOM05D007625 ORTHO05D009738 1.1e-89 334.0 253 62.8
ATR0796G164 Amborella trichopoda HOM05D007625 ORTHO05D009738 5.5e-89 331.6 257 61.9
Gorai.006G263200 Gossypium raimondii HOM05D007625 ORTHO05D009738 7.2e-89 331.3 242 64.5
PSO017G7039 Papaver somniferum HOM05D007625 ORTHO05D009738 1.2e-88 330.5 265 61.1
FAN12G4294 Fragaria x ananassa HOM05D007625 ORTHO05D009738 1.6e-88 330.1 249 63.5
Hund20557 Selenicereus undatus HOM05D007625 ORTHO05D009738 6.1e-88 328.2 267 60.7
BcaNung06438 Brassica carinata HOM05D007625 ORTHO05D009738 8.0e-88 327.8 237 64.1
Dinv44384 Davidia involucrata HOM05D007625 ORTHO05D005073 1.0e-87 327.4 254 63.8
AT3G16565 Arabidopsis thaliana HOM05D007625 ORTHO05D009738 2.3e-87 326.2 293 55.6
Eucgr.B01310 Eucalyptus grandis HOM05D007625 ORTHO05D009738 7.5e-86 321.2 244 63.1
Os01g0120400 Oryza sativa ssp. japonica HOM05D007625 ORTHO05D009738 1.7e-85 320.1 258 59.3
Hma1.2p1_1567F.1_g291060 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 3.3e-81 305.8 218 69.7
Glyma.17G026200 Glycine max HOM05D007625 ORTHO05D009738 2.8e-80 302.8 363 50.4
vmacro15237 Vaccinium macrocarpon HOM05D007625 ORTHO05D009738 9.8e-78 294.3 254 58.3
Nn3g21433 Nelumbo nucifera HOM05D007625 ORTHO05D009738 4.9e-77 292.0 257 57.6
Pp3c1_7890 Physcomitrium patens HOM05D007625 ORTHO05D009738 6.3e-77 291.6 262 57.3
Hma1.2p1_0078F.1_g040640 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 3.2e-76 289.3 217 66.4
SalBow5G0239 Salvia bowleyana HOM05D007625 ORTHO05D009738 4.1e-76 288.9 230 60.0
Lj3A816T27 Lonicera japonica HOM05D007625 ORTHO05D009738 4.7e-72 275.4 228 62.3
Cpa.g.sc16.167 Carica papaya HOM05D007625 ORTHO05D009738 9.8e-70 267.7 209 62.7
SMO356G0461 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 9.2e-68 261.2 258 51.9
Lj3A819G38 Lonicera japonica HOM05D007625 ORTHO05D009738 1.6e-64 250.4 286 50.3
SMO002G0002 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 3.6e-64 249.2 249 51.8
AUR62035873 Chenopodium quinoa HOM05D007625 ORTHO05D009738 8.0e-64 248.1 202 59.9
Carub.0003s1629 Capsella rubella HOM05D007625 ORTHO05D009738 5.2e-63 245.4 167 67.1
CDE12G0709 Ceratophyllum demersum HOM05D007625 ORTHO05D009738 1.5e-62 243.8 258 50.8
Aa31LG8G3700 Aethionema arabicum HOM05D007625 ORTHO05D009738 4.4e-62 242.3 276 48.9
AagrBONN_evm.TU.Sc2ySwM_228.2358 Anthoceros agrestis HOM05D007625 ORTHO05D009738 7.1e-60 235.0 186 58.6
Sc19g0005180 Simmondsia chinensis HOM05D007625 ORTHO05D009738 1.2e-51 207.6 261 46.0
MCO16G322 Micromonas commoda HOM05D007625 ORTHO05D009738 2.1e-48 196.8 267 43.1
Zm00001eb334800 Zea mays HOM05D007625 ORTHO05D009738 4.7e-48 195.7 186 53.8
EL10Ac3g06592 Beta vulgaris HOM05D007625 ORTHO05D009738 3.2e-44 183.0 259 42.1
BcaB03g15776 Brassica carinata HOM05D007625 ORTHO05D009738 1.6e-27 127.5 119 56.3
Medtr4g123440 Medicago truncatula HOM05D007625 ORTHO05D009738 1.6e-27 127.5 124 59.7
unitig_0.g621 Utricularia gibba HOM05D007625 ORTHO05D009738 1.8e-23 114.0 156 43.6
Hma1.2p1_0785F.1_g217410 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 3.4e-22 109.8 71 67.6
Glyma.19G060100 Glycine max HOM05D007625 ORTHO05D009738 1.6e-19 100.9 82 63.4
Cpa.g.c47082 Carica papaya HOM05D007625 ORTHO05D009738 1.1e-17 94.7 90 56.7
Aqoxy2G02999 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 6.2e-16 89.0 68 61.8
MD16G1169600 Malus domestica HOM05D007625 ORTHO05D009738 8.4e-13 78.6 105 42.9
AL6G33900 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 7.1e-12 75.5 220 27.7
Manes.04G068300 Manihot esculenta HOM05D001816 ORTHO05D002001 4.6e-11 72.8 221 28.5
BcaC03g13917 Brassica carinata HOM05D001816 ORTHO05D002001 7.9e-11 72.0 221 29.9
C02p11280 Brassica napus HOM05D001816 ORTHO05D002001 7.9e-11 72.0 221 29.9
Carub.0006s2052 Capsella rubella HOM05D001816 ORTHO05D002001 7.9e-11 72.0 220 28.2
AT5G22800 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 1.0e-10 71.6 220 27.7
BolC2t07196H Brassica oleracea HOM05D001816 ORTHO05D002001 1.0e-10 71.6 221 29.9
Cfa005345 Carpinus fangiana HOM05D001816 ORTHO05D002001 1.0e-10 71.6 245 27.8
Thecc.02G050000 Theobroma cacao HOM05D001816 ORTHO05D002001 1.0e-10 71.6 232 29.7
BcaB05g22693 Brassica carinata HOM05D001816 ORTHO05D002001 1.3e-10 71.2 221 28.1
BNapus_Darmor_BZH_scaffold_38p00390 Brassica napus HOM05D001816 ORTHO05D002001 1.3e-10 71.2 221 29.4
CARHR190770 Cardamine hirsuta HOM05D001816 ORTHO05D002001 1.3e-10 71.2 220 27.7
Lalb_Chr08g0246781 Lupinus albus HOM05D001816 ORTHO05D002001 1.3e-10 71.2 223 26.9
COL.COLO4_17969 Corchorus olitorius HOM05D001816 ORTHO05D002001 1.8e-10 70.9 230 29.1
Mapoly0065s0015 Marchantia polymorpha HOM05D001816 ORTHO05D002001 1.8e-10 70.9 223 26.9
BraA02t05688Z Brassica rapa HOM05D001816 ORTHO05D002001 2.3e-10 70.5 221 29.4
CiPaw.05G091200 Carya illinoinensis HOM05D001816 ORTHO05D002001 3.0e-10 70.1 222 30.2
MELO3C013645.2 Cucumis melo HOM05D001816 ORTHO05D002001 3.0e-10 70.1 222 30.6
Haze_02022 Corylus avellana HOM05D001816 ORTHO05D002001 3.9e-10 69.7 245 27.3
PGR142G1779 Punica granatum HOM05D001816 ORTHO05D002001 3.9e-10 69.7 221 29.9
Sp6g22620 Schrenkiella parvula HOM05D001816 ORTHO05D002001 3.9e-10 69.7 224 28.6
Thhalv10012575m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 5.1e-10 69.3 221 28.1
Lj9C403T6 Lonicera japonica HOM05D001816 ORTHO05D002001 5.1e-10 69.3 215 27.0
arahy.Tifrunner.gnm1.ann1.X97WXI Arachis hypogaea HOM05D001816 ORTHO05D002001 8.7e-10 68.6 215 28.4
Gohir.A03G208200 Gossypium hirsutum HOM05D001816 ORTHO05D002001 8.7e-10 68.6 230 27.4
arahy.Tifrunner.gnm1.ann1.1BU1FJ Arachis hypogaea HOM05D001816 ORTHO05D002001 1.1e-09 68.2 215 28.4
Duzib132G0368 Durio zibethinus HOM05D001816 ORTHO05D002001 1.1e-09 68.2 230 27.8
Pp3c2_4380 Physcomitrium patens HOM05D001816 ORTHO05D002001 1.1e-09 68.2 244 28.3
Ah.01g023480 Amaranthus hybridus HOM05D001816 ORTHO05D002001 1.5e-09 67.8 222 27.5
ATR0712G016 Amborella trichopoda HOM05D001816 ORTHO05D002001 1.5e-09 67.8 222 27.9
DCAR_022835 Daucus carota HOM05D001816 ORTHO05D002001 1.5e-09 67.8 220 26.4
SGA_v2.0_scaffold32G13329 Striga asiatica HOM05D001816 ORTHO05D002001 1.5e-09 67.8 221 28.1
EL10Ac9g21289 Beta vulgaris HOM05D001816 ORTHO05D002001 1.9e-09 67.4 223 28.7
ClCG02G010990 Citrullus lanatus HOM05D001816 ORTHO05D002001 1.9e-09 67.4 221 29.0
Ciclev10030103m.g Citrus clementina HOM05D001816 ORTHO05D002001 1.9e-09 67.4 224 27.7
Atru.chr5.3488 Acer truncatum HOM05D001816 ORTHO05D002001 2.5e-09 67.0 221 28.1
Aa31LG2G15270 Aethionema arabicum HOM05D001816 ORTHO05D002001 2.5e-09 67.0 222 29.3
CsaV3_6G012710 Cucumis sativus L. HOM05D001816 ORTHO05D002001 2.5e-09 67.0 221 29.4
Gohir.D02G229700 Gossypium hirsutum HOM05D001816 ORTHO05D002001 4.3e-09 66.2 230 27.4
Phvul.007G142900 Phaseolus vulgaris HOM05D001816 ORTHO05D002001 4.3e-09 66.2 215 27.9
VMungo1309G1075 Vigna mungo HOM05D001816 ORTHO05D002001 4.3e-09 66.2 216 29.6
Gorai.005G257400 Gossypium raimondii HOM05D001816 ORTHO05D002001 5.7e-09 65.9 230 27.4
TWI31G0479 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 5.7e-09 65.9 221 27.6
Actinidia20551 Actinidia chinensis HOM05D001816 ORTHO05D002001 7.4e-09 65.5 222 28.4
Nn6g31779 Nelumbo nucifera HOM05D001816 ORTHO05D002001 7.4e-09 65.5 223 27.8
Prupe.8G174300 Prunus persica HOM05D001816 ORTHO05D002001 7.4e-09 65.5 221 27.1
AUR62009961 Chenopodium quinoa HOM05D001816 ORTHO05D002001 9.7e-09 65.1 222 29.3
FvH4_2g16070 Fragaria vesca HOM05D001816 ORTHO05D002001 9.7e-09 65.1 220 26.4
FAN15G3397 Fragaria x ananassa HOM05D001816 ORTHO05D002001 9.7e-09 65.1 220 26.8
FAN24G0316 Fragaria x ananassa HOM05D001816 ORTHO05D002001 9.7e-09 65.1 220 26.4
FAN27G0881 Fragaria x ananassa HOM05D001816 ORTHO05D002001 9.7e-09 65.1 220 26.4
MCO11G803 Micromonas commoda HOM05D001816 ORTHO05D002001 9.7e-09 65.1 216 26.9
Sabra09G0109800 Salix brachista HOM05D001816 ORTHO05D002001 9.7e-09 65.1 221 27.6
TPR.G38581 Trifolium pratense HOM05D001816 ORTHO05D002001 1.3e-08 64.7 214 26.6
Eucgr.I01492 Eucalyptus grandis HOM05D001816 ORTHO05D002001 1.6e-08 64.3 221 27.6
Medtr3g118360 Medicago truncatula HOM05D001816 ORTHO05D002001 1.6e-08 64.3 214 27.6
Sed0019949 Sechium edule HOM05D001816 ORTHO05D002001 1.6e-08 64.3 221 28.1
AUR62012953 Chenopodium quinoa HOM05D001816 ORTHO05D002001 2.2e-08 63.9 221 28.1
Phvul.009G116900 Phaseolus vulgaris HOM05D001816 ORTHO05D002001 2.2e-08 63.9 215 27.4
QL11p055386 Quercus lobata HOM05D001816 ORTHO05D002001 2.2e-08 63.9 221 27.1
THA.LOC104807386 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 2.2e-08 63.9 222 30.2
GSVIVG01023918001 Vitis vinifera HOM05D001816 ORTHO05D002001 2.2e-08 63.9 223 29.1
CSS0006826 Camellia sinensis var. sinensis HOM05D001816 ORTHO05D002001 2.8e-08 63.5 221 28.1
Glyma.04G001600 Glycine max HOM05D001816 ORTHO05D002001 2.8e-08 63.5 215 27.4
SalBow1G5513 Salvia bowleyana HOM05D001816 ORTHO05D002001 2.8e-08 63.5 245 27.3
MD10G1133000 Malus domestica HOM05D001816 ORTHO05D002001 3.7e-08 63.2 220 25.9
Zm00001eb371640 Zea mays HOM05D001816 ORTHO05D002001 3.7e-08 63.2 216 27.8
Dinv41898 Davidia involucrata HOM05D001816 ORTHO05D002001 4.8e-08 62.8 221 27.6
Potri.009G141300 Populus trichocarpa HOM05D001816 ORTHO05D002001 4.8e-08 62.8 222 28.4
RcHm_v2.0_Chr6g0279751 Rosa chinensis HOM05D001816 ORTHO05D002001 4.8e-08 62.8 221 27.1
FAN20G1974 Fragaria x ananassa HOM05D001816 ORTHO05D002001 6.3e-08 62.4 219 26.9
TAR628G0285 Trochodendron aralioides HOM05D001816 ORTHO05D002001 6.3e-08 62.4 221 26.7
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 8.2e-08 62.0 275 26.5
PRCOL_00002617 Prasinoderma coloniale HOM05D001816 ORTHO05D002001 1.1e-07 61.6 221 28.1
QL11p055697 Quercus lobata HOM05D001816 ORTHO05D002001 1.1e-07 61.6 215 27.0
CANSAT25G0387 Cannabis sativa HOM05D001816 ORTHO05D002001 1.4e-07 61.2 223 26.9
Ca_15279_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 1.4e-07 61.2 214 26.2
Glyma.06G001100 Glycine max HOM05D001816 ORTHO05D002001 1.4e-07 61.2 218 29.4
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 3.1e-07 60.1 246 27.2
Lj1g0012910 Lotus japonicus HOM05D001816 ORTHO05D002001 3.1e-07 60.1 215 26.5
PSO170G2372 Papaver somniferum HOM05D001816 ORTHO05D002001 4.1e-07 59.7 221 27.1
CDE05G1766 Ceratophyllum demersum HOM05D001816 ORTHO05D002001 6.9e-07 58.9 218 28.4
vmacro17274 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 6.9e-07 58.9 216 27.8
Cc09_g10520 Coffea canephora HOM05D001816 ORTHO05D002001 9.0e-07 58.5 215 25.6
Pp3s155_80 Physcomitrium patens HOM05D001816 ORTHO05D034380 9.0e-07 58.5 258 23.6
Rhsim05G0050000 Rhododendron simsii HOM05D001816 ORTHO05D002001 9.0e-07 58.5 217 26.7
Solyc01g111990.3 Solanum lycopersicum HOM05D001816 ORTHO05D002001 1.2e-06 58.2 221 27.6
Sopen01g054040 Solanum pennellii HOM05D001816 ORTHO05D002001 1.2e-06 58.2 221 27.6
unitig_52.g17019 Utricularia gibba HOM05D001816 ORTHO05D002001 1.2e-06 58.2 246 27.6
HanXRQChr17g0559451 Helianthus annuus HOM05D001816 ORTHO05D002001 2.0e-06 57.4 215 25.6
Aqoxy6G01808 Aquilegia oxysepala HOM05D001816 ORTHO05D002001 3.4e-06 56.6 217 26.7
PRCOL_00004192 Prasinoderma coloniale HOM05D001816 ORTHO05D034380 5.9e-06 55.8 242 25.2


User provided reference genes

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