Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8HXD5I Arachis hypogaea HOM05D004270 ORTHO05D005037 4.5e-52 207.6 101 100.0
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 2.4e-21 105.5 237 35.0
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 2.4e-21 105.5 237 35.0
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 2.0e-20 102.4 169 37.3
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 5.5e-18 94.4 237 32.1
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 5.5e-18 94.4 211 33.6
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 1.6e-17 92.8 244 32.0
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 1.6e-17 92.8 237 31.6
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 2.1e-17 92.4 237 31.6
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 2.1e-17 92.4 212 33.0
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 2.1e-17 92.4 237 31.6
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 4.7e-17 91.3 237 31.2
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 4.7e-17 91.3 237 31.2
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 6.1e-17 90.9 234 30.8
arahy.Tifrunner.gnm1.ann1.FF7QMU Arachis hypogaea HOM05D004270 ORTHO05D005037 7.9e-17 90.5 46 95.7
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 1.4e-16 89.7 237 30.0
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 3.0e-16 88.6 98 53.1
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 3.9e-16 88.2 98 52.0
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 3.9e-16 88.2 46 91.3
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 3.9e-16 88.2 46 91.3
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 5.1e-16 87.8 46 89.1
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 5.1e-16 87.8 46 89.1
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 5.1e-16 87.8 89 55.1
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 5.1e-16 87.8 46 89.1
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 5.1e-16 87.8 89 55.1
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 5.1e-16 87.8 46 89.1
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 5.1e-16 87.8 89 55.1
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 5.1e-16 87.8 46 89.1
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 5.1e-16 87.8 46 89.1
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 5.1e-16 87.8 237 29.5
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 5.1e-16 87.8 46 89.1
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 6.7e-16 87.4 237 30.0
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 6.7e-16 87.4 237 30.0
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 6.7e-16 87.4 46 87.0
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 6.7e-16 87.4 46 87.0
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 6.7e-16 87.4 46 87.0
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 6.7e-16 87.4 237 30.0
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 6.7e-16 87.4 46 87.0
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 6.7e-16 87.4 89 53.9
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 8.8e-16 87.0 75 62.7
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 8.8e-16 87.0 46 89.1
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 8.8e-16 87.0 91 51.6
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 8.8e-16 87.0 91 51.6
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 8.8e-16 87.0 237 30.8
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 1.1e-15 86.7 46 89.1
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 1.1e-15 86.7 46 87.0
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 1.1e-15 86.7 46 89.1
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 1.1e-15 86.7 46 89.1
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 1.1e-15 86.7 50 82.0
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 1.1e-15 86.7 46 87.0
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 1.1e-15 86.7 46 87.0
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 1.1e-15 86.7 89 53.9
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 1.1e-15 86.7 46 87.0
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 1.1e-15 86.7 92 51.1
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 1.5e-15 86.3 46 84.8
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 1.5e-15 86.3 46 87.0
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 1.5e-15 86.3 46 84.8
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.5e-15 86.3 46 87.0
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.5e-15 86.3 46 87.0
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.5e-15 86.3 46 87.0
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 1.5e-15 86.3 46 84.8
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 1.5e-15 86.3 46 84.8
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.5e-15 86.3 237 29.1
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 1.5e-15 86.3 46 87.0
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 1.5e-15 86.3 46 87.0
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 1.5e-15 86.3 46 87.0
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 1.5e-15 86.3 46 87.0
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 2.0e-15 85.9 46 87.0
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 2.0e-15 85.9 46 82.6
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 2.0e-15 85.9 98 50.0
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 2.0e-15 85.9 46 89.1
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 2.0e-15 85.9 46 84.8
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 2.6e-15 85.5 46 84.8
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 2.6e-15 85.5 98 50.0
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 2.6e-15 85.5 90 52.2
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 2.6e-15 85.5 46 87.0
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 2.6e-15 85.5 46 84.8
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 2.6e-15 85.5 46 87.0
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 2.6e-15 85.5 46 87.0
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 2.6e-15 85.5 46 87.0
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 2.6e-15 85.5 46 84.8
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 2.6e-15 85.5 46 84.8
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 3.3e-15 85.1 46 84.8
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 3.3e-15 85.1 46 84.8
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 3.3e-15 85.1 46 84.8
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 3.3e-15 85.1 46 84.8
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 3.3e-15 85.1 89 52.8
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 3.3e-15 85.1 89 52.8
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 3.3e-15 85.1 89 52.8
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 3.3e-15 85.1 89 52.8
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 3.3e-15 85.1 89 52.8
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 3.3e-15 85.1 89 52.8
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 3.3e-15 85.1 89 52.8
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 3.3e-15 85.1 89 52.8
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 3.3e-15 85.1 89 52.8
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 3.3e-15 85.1 89 52.8
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 3.3e-15 85.1 46 80.4
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 3.3e-15 85.1 46 84.8
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 3.3e-15 85.1 46 84.8
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 3.3e-15 85.1 46 84.8
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 3.3e-15 85.1 46 84.8
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 3.3e-15 85.1 46 82.6
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 3.3e-15 85.1 46 84.8
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 3.3e-15 85.1 46 84.8
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 4.4e-15 84.7 46 82.6
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 4.4e-15 84.7 89 51.7
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 4.4e-15 84.7 46 82.6
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 5.7e-15 84.3 46 82.6
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 7.4e-15 84.0 46 82.6
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 7.4e-15 84.0 237 28.7
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 7.4e-15 84.0 237 28.7
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 7.4e-15 84.0 46 80.4
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 7.4e-15 84.0 46 82.6
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 9.7e-15 83.6 46 78.3
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 9.7e-15 83.6 46 82.6
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 9.7e-15 83.6 46 80.4
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 9.7e-15 83.6 234 30.3
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 9.7e-15 83.6 46 82.6
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 1.3e-14 83.2 46 84.8
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 1.7e-14 82.8 46 78.3
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 2.2e-14 82.4 46 80.4
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 2.2e-14 82.4 46 80.4
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 2.2e-14 82.4 46 80.4
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 2.2e-14 82.4 46 80.4
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 2.2e-14 82.4 46 80.4
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 6.3e-14 80.9 46 78.3
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 1.4e-13 79.7 46 80.4
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 1.4e-13 79.7 46 80.4
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 1.4e-13 79.7 46 80.4
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 1.4e-13 79.7 46 78.3
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 1.4e-13 79.7 46 80.4
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 4.1e-13 78.2 46 76.1
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 7.0e-13 77.4 59 69.5
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 3.5e-12 75.1 49 75.5
arahy.Tifrunner.gnm1.ann1.IZH1PK Arachis hypogaea HOM05D004270 ORTHO05D005037 3.5e-12 75.1 49 75.5
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 4.5e-12 74.7 60 63.3
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 1.7e-11 72.8 62 58.1
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 5.0e-11 71.2 46 69.6
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 5.0e-11 71.2 55 67.3
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 5.0e-11 71.2 55 67.3
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 1.5e-10 69.7 45 77.8
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-10 69.7 46 69.6
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 1.9e-10 69.3 76 51.3
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 1.9e-10 69.3 76 51.3
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 3.2e-10 68.6 199 30.7
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 5.5e-10 67.8 46 69.6
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 1.6e-09 66.2 41 73.2
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 2.7e-09 65.5 75 45.3
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 3.6e-09 65.1 75 44.0
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 1.4e-08 63.2 75 45.3
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 1.4e-08 63.2 75 45.3
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 6.7e-08 60.8 46 67.4
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 4.4e-07 58.2 45 55.6
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 5.7e-07 57.8 35 74.3
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 6.3e-06 54.3 30 80.0


User provided reference genes

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