Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 0.0e+00 1520.0 813 100.0
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 0.0e+00 1487.2 813 97.2
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 0.0e+00 1160.6 830 73.9
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 0.0e+00 1156.7 820 74.4
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 0.0e+00 1152.5 816 74.0
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 0.0e+00 1149.0 831 72.9
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 0.0e+00 1140.2 830 74.9
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 0.0e+00 1119.0 818 73.1
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 0.0e+00 1088.2 854 70.3
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 0.0e+00 1080.9 840 70.0
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 0.0e+00 1077.4 818 70.8
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 5.6e-312 1074.7 818 70.7
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 5.6e-312 1073.5 820 70.6
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 1.9e-310 1068.9 819 70.2
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 7.7e-304 1047.0 816 69.2
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 2.3e-300 1035.4 815 66.7
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 5.2e-300 1034.2 820 69.3
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 1.6e-293 1012.7 816 67.3
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 8.8e-292 1006.9 838 66.2
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 5.7e-291 1004.2 842 65.0
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 1.1e-289 1000.0 826 65.5
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 1.8e-289 999.2 815 65.3
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 2.0e-288 995.7 817 66.6
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 2.0e-288 995.7 833 66.7
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 7.7e-288 993.8 835 66.7
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 7.2e-286 987.3 818 68.7
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 6.8e-284 980.7 815 64.4
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 2.8e-282 975.3 824 65.5
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 1.8e-281 972.6 822 66.9
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 1.8e-281 972.6 826 64.8
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 2.4e-281 972.2 836 64.5
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 5.4e-281 971.1 811 64.2
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 1.1e-278 963.4 820 63.9
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.5e-278 963.0 816 64.3
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 2.1e-277 959.1 823 63.4
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 2.1e-277 959.1 824 63.8
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.8e-277 958.7 823 64.3
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 4.7e-277 958.0 807 64.2
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 2.0e-275 952.6 841 64.1
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.3e-274 949.9 817 63.4
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 2.2e-274 949.1 823 63.3
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.4e-273 946.4 815 63.2
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.0e-272 942.6 817 63.2
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 8.6e-271 937.2 860 60.6
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 6.1e-269 931.0 834 62.0
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 1.4e-268 929.9 816 64.0
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 1.0e-263 913.7 840 60.8
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 2.1e-261 906.0 728 66.9
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 8.0e-261 904.0 794 63.4
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 4.1e-257 891.7 723 66.9
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 3.9e-255 885.2 822 61.4
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 2.0e-251 872.8 779 62.4
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 6.8e-244 847.8 839 57.1
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.1e-241 840.5 844 59.4
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 3.2e-241 839.0 820 58.4
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 1.3e-234 817.0 825 57.8
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 2.9e-234 815.8 830 55.9
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 2.9e-234 815.8 830 56.0
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 3.2e-233 812.4 562 75.6
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.2e-232 810.4 881 53.9
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 1.6e-229 800.0 809 58.5
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 1.1e-228 797.3 881 54.4
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 1.8e-228 796.6 877 52.1
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 6.4e-226 788.1 678 67.4
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 8.7e-223 777.7 830 54.6
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 1.1e-222 777.3 836 54.5
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 2.5e-222 776.2 822 54.0
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 8.1e-221 771.2 823 55.2
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 1.8e-220 770.0 850 53.5
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 6.9e-220 768.1 931 51.7
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 6.9e-220 768.1 936 51.1
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 4.2e-217 758.8 833 54.5
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 4.6e-216 755.4 827 57.4
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 7.9e-216 754.6 924 51.3
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 1.3e-213 747.3 987 48.1
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 2.2e-210 736.5 939 49.2
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 1.1e-209 734.2 932 50.2
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 7.9e-208 728.0 838 51.8
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 1.1e-206 724.2 828 52.2
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 4.8e-205 718.8 826 52.5
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 2.4e-204 716.5 546 69.0
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 2.4e-204 716.5 766 56.4
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 6.9e-204 714.9 814 54.4
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 3.2e-201 706.1 834 53.8
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 5.1e-199 698.7 913 49.9
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 2.5e-198 696.4 914 49.9
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 2.5e-198 696.4 812 51.1
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 4.3e-198 695.7 941 47.6
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 7.4e-198 694.9 917 49.7
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 2.2e-197 693.3 923 49.4
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.8e-196 690.3 822 50.9
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 2.4e-196 689.9 822 49.5
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 3.1e-196 689.5 827 51.4
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 1.1e-193 681.0 824 51.1
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 1.4e-193 680.6 789 53.5
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 1.9e-193 680.2 475 74.3
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 7.4e-190 668.3 923 48.8
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 9.7e-190 667.9 822 51.7
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 2.2e-189 666.8 847 50.9
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 4.1e-188 662.5 923 48.6
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 4.5e-187 659.1 1060 43.4
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 3.8e-186 656.0 827 49.9
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 7.2e-185 651.7 839 48.4
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 2.3e-183 646.7 824 50.5
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.1e-180 636.3 634 58.2
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 2.7e-176 623.2 812 49.8
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 2.3e-167 593.6 419 71.4
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 7.5e-166 588.6 384 76.3
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 7.2e-161 572.0 358 79.1
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 1.0e-159 568.2 669 51.0
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 2.2e-157 560.5 345 79.1
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 1.8e-156 557.4 358 77.7
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 2.7e-155 553.5 1101 38.1
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 6.0e-147 525.8 408 65.7
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 1.1e-145 521.5 361 72.3
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 1.2e-142 511.5 346 72.8
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 9.8e-142 508.4 449 61.0
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 2.4e-140 503.8 380 67.4
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 1.0e-138 498.4 802 43.9
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 3.0e-138 496.9 413 65.1
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 9.5e-137 491.9 354 68.1
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 1.8e-135 487.6 596 50.2
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 6.8e-135 485.7 386 66.6
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 4.1e-132 476.5 514 51.8
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 3.1e-127 460.3 297 75.1
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 1.5e-126 458.0 335 70.4
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 4.4e-126 456.4 379 64.9
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 1.4e-124 451.4 417 57.3
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 4.6e-123 446.4 676 43.3
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 5.1e-122 443.0 431 52.9
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 1.3e-120 438.3 442 53.6
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 1.5e-118 431.4 274 77.0
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 4.2e-116 423.3 468 55.6
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 7.8e-115 419.1 525 47.0
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 2.6e-110 404.1 437 49.4
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 8.4e-109 399.1 403 53.3
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 7.9e-107 392.5 907 34.3
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 8.7e-106 389.0 456 53.3
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 1.2e-99 368.6 624 41.0
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.6e-96 358.2 245 75.5
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 3.2e-92 344.0 322 55.6
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 3.3e-89 334.0 613 38.8
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.5e-84 317.8 189 82.5
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 3.2e-84 317.4 480 43.3
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 1.2e-83 315.5 385 50.4
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 5.7e-81 306.6 350 52.3
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 1.7e-80 305.1 465 43.9
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 6.9e-79 299.7 483 46.4
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 9.1e-79 299.3 413 40.9
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 4.7e-75 287.0 269 58.0
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 8.8e-74 282.7 467 41.8
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 2.2e-72 278.1 579 42.3
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 7.0e-71 273.1 198 67.7
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 3.6e-67 260.8 417 44.1
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 4.7e-67 260.4 182 69.8
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.8e-58 231.9 476 40.5
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 5.2e-58 230.3 433 35.3
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 1.5e-57 228.8 334 38.6
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 1.5e-57 228.8 184 64.7
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 2.4e-55 221.5 187 62.6
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 4.5e-54 217.2 151 69.5
TPR.G16635 Trifolium pratense HOM05D003684 ORTHO05D004428 2.5e-52 211.5 214 61.7
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 7.2e-52 209.9 472 40.3
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 4.9e-48 197.2 365 37.3
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 2.4e-47 194.9 322 37.3
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 3.1e-47 194.5 101 92.1
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 1.5e-44 185.7 149 64.4
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 4.6e-38 164.1 85 88.2
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 2.7e-22 111.7 63 84.1
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 6.0e-22 110.5 65 81.5
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.3e-21 108.6 127 52.8
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 1.6e-19 102.4 65 73.8
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 3.6e-19 101.3 53 88.7
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 2.3e-18 98.6 225 35.1
Ca_09910_v3 Cicer arietinum L. HOM05D003095 ORTHO05D003517 6.0e-14 84.0 96 56.2
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 3.3e-12 78.2 52 73.1
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 2.1e-11 75.5 60 60.0
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.4e-09 67.8 38 89.5
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 5.8e-09 67.4 47 70.2
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 1.7e-08 65.9 32 87.5
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 8.4e-08 63.5 58 55.2
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.9e-07 62.4 56 60.7


User provided reference genes

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