Gene: AT5G08450

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G08450
  • Transcript Identifier AT5G08450.1
  • Gene Type Coding gene
  • Location Chr5 : 2727970-2732572 : negative

Gene Family Information

  • ID HOM05D003684
  • #Genes/#Species 186/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G08450.1
  • Alias HDC1,Histone Deacetylation Complex 1,RXT3-like,RXT3-like
  • uniprot Q8RWV9

Descriptions

  • Description zinc finger CCCH domain protein
  • Computational description CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009737
IMP
Gene Ontologyresponse to abscisic acid1
GO:0009845
IMP
Gene Ontologyseed germination1
GO:0009908
IMP
Gene Ontologyflower development1
GO:0016575
IEA
GOA Databasehistone deacetylation
GO:0016575
IDA
Gene Ontologyhistone deacetylation1
GO:0016575
IEA
InterProhistone deacetylation
GO:0080186
IMP
Gene Ontologydevelopmental vegetative growth1
GO:1902074
IMP
Gene Ontologyresponse to salt1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IDA
ISM
Gene Ontologynucleus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036609 LCCL domain superfamily
IPR013951 Histone deacetylation protein Rxt3
Mapman id Description
12.3.2.1.1.2.5 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.SNL-HDA19 histone deacetylase complex.associated component HDC1/Rxt3