Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1683.3 876 100.0
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1595.5 904 94.1
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1257.3 908 77.1
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 0.0e+00 1251.9 908 75.6
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 0.0e+00 1250.3 894 75.8
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1244.2 908 75.0
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1227.6 908 75.6
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 0.0e+00 1224.9 841 77.4
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 0.0e+00 1219.1 905 74.5
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 0.0e+00 1210.7 903 73.1
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 0.0e+00 1204.1 885 73.4
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 0.0e+00 1192.6 891 70.6
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 0.0e+00 1191.8 888 73.9
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 0.0e+00 1190.6 836 75.5
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 0.0e+00 1177.2 830 74.8
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 0.0e+00 1175.2 829 74.9
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 0.0e+00 1173.3 844 75.5
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 0.0e+00 1171.8 872 73.1
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 0.0e+00 1171.0 868 71.4
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1170.2 872 73.9
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1168.7 844 74.8
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 0.0e+00 1167.9 842 74.9
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1166.8 839 74.3
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 0.0e+00 1166.0 879 72.2
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 0.0e+00 1165.6 862 73.4
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1162.1 838 75.1
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 0.0e+00 1160.2 883 71.1
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1159.1 841 74.9
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1157.1 877 71.4
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1155.6 856 72.7
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1152.5 882 70.0
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 0.0e+00 1148.7 859 72.1
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 0.0e+00 1145.6 914 69.3
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 0.0e+00 1145.2 882 70.6
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 0.0e+00 1143.6 911 67.2
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 0.0e+00 1142.1 835 73.2
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 0.0e+00 1140.9 843 72.5
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 0.0e+00 1139.0 884 68.7
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 0.0e+00 1137.5 896 67.7
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 0.0e+00 1134.8 869 71.8
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 0.0e+00 1133.6 840 71.5
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 0.0e+00 1133.2 838 72.1
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 0.0e+00 1131.7 889 68.6
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1129.0 837 72.9
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1128.6 837 72.8
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 0.0e+00 1128.2 876 69.2
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 0.0e+00 1127.5 910 69.6
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 0.0e+00 1124.0 893 67.5
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 0.0e+00 1123.6 848 70.6
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 0.0e+00 1122.1 878 69.9
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 0.0e+00 1121.7 877 68.6
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 0.0e+00 1121.7 840 72.4
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 0.0e+00 1121.3 837 73.1
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 0.0e+00 1121.3 845 70.7
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 0.0e+00 1119.8 878 69.8
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1119.0 879 68.8
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 0.0e+00 1117.4 887 68.2
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 0.0e+00 1117.1 855 70.5
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 0.0e+00 1107.8 852 70.8
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 0.0e+00 1105.1 884 67.4
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 0.0e+00 1095.1 910 66.4
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 0.0e+00 1090.1 903 65.9
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1079.7 835 70.1
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1079.3 836 70.5
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 0.0e+00 1075.8 872 66.1
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 0.0e+00 1075.5 853 69.4
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 5.4e-311 1070.8 882 67.8
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 9.0e-311 1070.1 842 68.5
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 6.1e-307 1057.4 869 66.9
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 3.0e-306 1055.0 892 64.0
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 4.1e-303 1044.6 867 66.7
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 2.0e-302 1042.3 868 63.6
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 4.7e-299 1031.2 832 68.4
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 1.2e-297 1026.5 832 66.8
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 7.5e-297 1023.8 859 65.0
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 4.9e-296 1021.1 868 62.3
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 8.6e-293 1010.4 836 63.9
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 1.5e-292 1009.6 840 63.7
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 1.0e-290 1003.4 842 66.0
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 1.0e-290 1003.4 878 62.5
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 2.6e-289 998.8 828 62.8
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 7.5e-289 997.3 838 63.6
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 5.8e-281 971.1 778 67.9
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 5.8e-281 971.1 778 67.9
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 9.0e-258 894.0 860 59.8
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 1.8e-234 816.6 630 71.3
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 3.4e-217 759.2 847 50.5
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 2.2e-211 740.0 566 70.3
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 2.2e-208 729.9 515 76.9
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 6.5e-208 728.4 615 66.8
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 2.7e-206 723.0 876 48.5
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 2.0e-201 706.8 482 74.9
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 1.3e-192 677.6 580 66.9
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 6.1e-190 668.7 498 69.1
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 9.2e-186 654.8 488 72.1
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 4.5e-185 652.5 533 67.0
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 2.9e-184 649.8 824 45.4
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 2.2e-163 580.5 840 39.2
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 3.7e-163 579.7 467 70.0
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 2.1e-161 573.9 829 42.0
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 8.7e-152 542.0 421 69.1
Cc00_g32050 Coffea canephora HOM05D002281 ORTHO05D006774 3.0e-136 490.3 363 74.4
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 2.9e-123 447.2 855 34.2
Cpa.g.sc51.36 Carica papaya HOM05D002281 ORTHO05D006774 2.0e-100 371.3 314 71.0
Cpa.g.sc51.34 Carica papaya HOM05D002281 ORTHO05D006774 8.0e-97 359.4 255 70.6
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 1.7e-94 351.7 210 83.3
CDE02G1511 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 6.3e-94 349.7 202 82.7
ClCG03G011350 Citrullus lanatus HOM05D002281 ORTHO05D006774 4.7e-89 333.6 255 69.0
Haze_04483 Corylus avellana HOM05D002281 ORTHO05D006774 6.7e-88 329.7 238 69.3
vmacro19969 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 2.6e-87 327.8 228 70.2
Actinidia39975 Actinidia chinensis HOM05D002281 ORTHO05D006774 9.4e-82 309.3 194 77.3
Ah.13g065840 Amaranthus hybridus HOM05D002281 ORTHO05D006774 1.2e-81 308.9 226 68.1
Hma1.2p1_0123F.1_g058090 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 4.7e-81 307.0 218 69.7
CiPaw.07G076900 Carya illinoinensis HOM05D002281 ORTHO05D006774 8.0e-81 306.2 196 77.0
Hma1.2p1_0463F.1_g158160 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.4e-48 199.1 128 75.0
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 6.8e-48 196.8 164 64.0
Actinidia39977 Actinidia chinensis HOM05D002281 ORTHO05D006774 1.5e-47 195.7 144 67.4
AL685U10020 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 1.5e-42 179.1 120 71.7
Sopen01g022760 Solanum pennellii HOM05D002281 ORTHO05D006774 7.8e-36 156.8 210 46.7
QL03p032920 Quercus lobata HOM05D002281 ORTHO05D006774 1.9e-34 152.1 95 78.9
QL03p033074 Quercus lobata HOM05D002281 ORTHO05D006774 1.9e-34 152.1 94 79.8
RcHm_v2.0_Chr1g0330901 Rosa chinensis HOM05D002281 ORTHO05D006774 2.1e-20 105.5 118 50.8
vmacro19968 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.8e-19 102.4 99 54.5
Solyc01g016930.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 8.7e-19 100.1 82 65.9
ClCG03G011370 Citrullus lanatus HOM05D002281 ORTHO05D006774 7.4e-18 97.1 59 79.7
Solyc01g015200.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 9.6e-18 96.7 168 38.1
CDE08G0752 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.6e-17 95.9 63 71.4
Solyc01g013970.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.6e-17 95.9 89 59.6
Solyc01g016920.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.2e-15 89.7 53 83.0
Solyc01g014000.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 4.5e-15 87.8 73 61.6
Actinidia39976 Actinidia chinensis HOM05D002281 ORTHO05D006774 3.8e-14 84.7 60 78.3
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 9.3e-13 80.1 72 54.2
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 9.3e-13 80.1 72 54.2
BolC1t05755H Brassica oleracea HOM05D002281 ORTHO05D006774 1.2e-12 79.7 52 71.2
Solyc01g016870.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 3.5e-12 78.2 49 79.6
TPR.G31597 Trifolium pratense HOM05D002281 ORTHO05D006774 3.5e-12 78.2 98 46.9
Cre12.g497350 Chlamydomonas reinhardtii HOM05D002281 ORTHO05D006774 1.6e-09 69.3 247 27.1
BraA01t04528Z Brassica rapa HOM05D002281 ORTHO05D006774 4.0e-08 64.7 49 65.3
BolC1t05758H Brassica oleracea HOM05D002281 ORTHO05D006774 2.0e-07 62.4 42 69.0


User provided reference genes

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