Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6SF4HQ Arachis hypogaea HOM05D000228 ORTHO05D013010 2.9e-27 124.4 60 100.0
arahy.Tifrunner.gnm1.ann1.RU3ERW Arachis hypogaea HOM05D000228 ORTHO05D006129 6.4e-14 80.1 49 75.5
arahy.Tifrunner.gnm1.ann1.WX3P41 Arachis hypogaea HOM05D000228 ORTHO05D006129 6.4e-14 80.1 49 75.5
arahy.Tifrunner.gnm1.ann1.08AYB8 Arachis hypogaea HOM05D000228 ORTHO05D013010 1.1e-13 79.3 49 73.5
arahy.Tifrunner.gnm1.ann1.K7S8RA Arachis hypogaea HOM05D000228 ORTHO05D013010 1.4e-13 79.0 49 79.6
arahy.Tifrunner.gnm1.ann1.HG0937 Arachis hypogaea HOM05D000228 ORTHO05D013010 3.5e-12 74.3 54 72.2
arahy.Tifrunner.gnm1.ann1.RLQ4ZH Arachis hypogaea HOM05D000228 ORTHO05D013010 3.5e-12 74.3 49 67.3
arahy.Tifrunner.gnm1.ann1.YWW8G9 Arachis hypogaea HOM05D000228 ORTHO05D013010 1.1e-10 69.3 63 55.6
arahy.Tifrunner.gnm1.ann1.D50IR8 Arachis hypogaea HOM05D000228 ORTHO05D013010 1.5e-10 68.9 37 91.9
ClCG00G000380 Citrullus lanatus HOM05D000228 ORTHO05D006129 1.6e-09 65.5 40 67.5
ClCG10G003630 Citrullus lanatus HOM05D000228 ORTHO05D006129 1.6e-09 65.5 40 67.5
MELO3C014034.2 Cucumis melo HOM05D000228 ORTHO05D006129 1.6e-09 65.5 40 67.5
Lalb_Chr05g0214761 Lupinus albus HOM05D000228 ORTHO05D006129 1.6e-09 65.5 47 63.8
CsaV3_3G003630 Cucumis sativus L. HOM05D000228 ORTHO05D006129 2.1e-09 65.1 40 65.0
CiPaw.12G099100 Carya illinoinensis HOM05D000228 ORTHO05D013010 2.8e-09 64.7 40 67.5
Atru.chr9.1533 Acer truncatum HOM05D000228 ORTHO05D006129 4.7e-09 63.9 48 58.3
CSS0022136 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D006129 4.7e-09 63.9 43 60.5
Sed0014462 Sechium edule HOM05D000228 ORTHO05D006129 6.2e-09 63.5 40 65.0
Sc01g0008810 Simmondsia chinensis HOM05D001804 ORTHO05D006129 8.1e-09 63.2 40 67.5
Lalb_Chr05g0225101 Lupinus albus HOM05D000228 ORTHO05D013010 1.1e-08 62.8 44 61.4
Dinv37697 Davidia involucrata HOM05D000228 ORTHO05D006129 1.4e-08 62.4 43 60.5
Lj2g0010994 Lotus japonicus HOM05D000228 ORTHO05D006129 2.3e-08 61.6 43 65.1
Manes.02G028200 Manihot esculenta HOM05D000228 ORTHO05D006129 2.3e-08 61.6 46 56.5
Dinv39017 Davidia involucrata HOM05D000228 ORTHO05D006129 3.1e-08 61.2 43 60.5
Phvul.002G153700 Phaseolus vulgaris HOM05D000228 ORTHO05D006129 3.1e-08 61.2 43 62.8
TWI15G0190 Tripterygium wilfordii HOM05D000228 ORTHO05D006129 3.1e-08 61.2 40 62.5
QL12p017019 Quercus lobata HOM05D000228 ORTHO05D006129 4.0e-08 60.8 56 55.4
TPR.G6660 Trifolium pratense HOM05D000228 ORTHO05D006129 4.0e-08 60.8 55 54.5
TWI60G0610 Tripterygium wilfordii HOM05D000228 ORTHO05D006129 4.0e-08 60.8 40 62.5
Hma1.2p1_0138F.1_g062630 Hydrangea macrophylla HOM05D000228 ORTHO05D006129 5.2e-08 60.5 49 57.1
Lalb_Chr09g0324731 Lupinus albus HOM05D000228 ORTHO05D006129 5.2e-08 60.5 40 67.5
Medtr5g011000 Medicago truncatula HOM05D000228 ORTHO05D006129 5.2e-08 60.5 40 62.5
Psat2g181400 Pisum sativum HOM05D000228 ORTHO05D006129 5.2e-08 60.5 40 65.0
VMungo1215G3193 Vigna mungo HOM05D000228 ORTHO05D006129 5.2e-08 60.5 43 62.8
Potri.001G111300 Populus trichocarpa HOM05D000228 ORTHO05D006129 6.8e-08 60.1 43 60.5
Sabra01G0084800 Salix brachista HOM05D000228 ORTHO05D006129 6.8e-08 60.1 36 69.4
TPR.G33168 Trifolium pratense HOM05D000228 ORTHO05D013010 6.8e-08 60.1 39 66.7
Cfa012094 Carpinus fangiana HOM05D000228 ORTHO05D006129 8.9e-08 59.7 40 57.5
Haze_08958 Corylus avellana HOM05D000228 ORTHO05D006129 8.9e-08 59.7 40 57.5
Gohir.A08G178200 Gossypium hirsutum HOM05D000228 ORTHO05D006129 8.9e-08 59.7 40 62.5
Gohir.D08G196600 Gossypium hirsutum HOM05D000228 ORTHO05D006129 8.9e-08 59.7 40 62.5
Gorai.004G207300 Gossypium raimondii HOM05D000228 ORTHO05D006129 8.9e-08 59.7 40 62.5
QL05p069269 Quercus lobata HOM05D000228 ORTHO05D006129 8.9e-08 59.7 40 65.0
SHI01912 Sapria himalayana HOM05D000228 ORTHO05D006129 8.9e-08 59.7 41 56.1
Prupe.5G089300 Prunus persica HOM05D000228 ORTHO05D006129 1.2e-07 59.3 40 65.0
GSVIVG01019869001 Vitis vinifera HOM05D000228 ORTHO05D006129 1.2e-07 59.3 35 68.6
Rhsim07G0095300 Rhododendron simsii HOM05D000228 ORTHO05D006129 1.5e-07 58.9 36 61.1
Thecc.03G270300 Theobroma cacao HOM05D000228 ORTHO05D006129 1.5e-07 58.9 40 60.0
vmacro14006 Vaccinium macrocarpon HOM05D000228 ORTHO05D006129 1.5e-07 58.9 36 61.1
Ah.12g057750 Amaranthus hybridus HOM05D000228 ORTHO05D006129 2.0e-07 58.5 39 59.0
EL10Ac5g12720 Beta vulgaris HOM05D000228 ORTHO05D006129 2.0e-07 58.5 38 65.8
COL.COLO4_05280 Corchorus olitorius HOM05D000228 ORTHO05D006129 2.0e-07 58.5 56 50.0
Glyma.11G026700 Glycine max HOM05D000228 ORTHO05D006129 2.0e-07 58.5 43 60.5
Lj8C239G8 Lonicera japonica HOM05D000228 ORTHO05D006129 2.0e-07 58.5 40 60.0
Hund11530 Selenicereus undatus HOM05D000228 ORTHO05D006129 2.0e-07 58.5 39 64.1
ECA246G3981 Erigeron canadensis HOM05D000228 ORTHO05D006129 2.6e-07 58.2 39 59.0
Eucgr.D01929 Eucalyptus grandis HOM05D000228 ORTHO05D006129 2.6e-07 58.2 47 53.2
Gohir.A11G021201 Gossypium hirsutum HOM05D000228 ORTHO05D013010 2.6e-07 58.2 41 61.0
Lsat_1_v5_gn_3_5900 Lactuca sativa HOM05D000228 ORTHO05D006129 2.6e-07 58.2 39 61.5
PGR031G2544 Punica granatum HOM05D000228 ORTHO05D006129 2.6e-07 58.2 39 64.1
MSTRG.25571 Avicennia marina HOM05D000228 ORTHO05D006129 3.4e-07 57.8 36 66.7
AUR62017301 Chenopodium quinoa HOM05D000228 ORTHO05D006129 3.4e-07 57.8 39 61.5
Cc08_g13910 Coffea canephora HOM05D000228 ORTHO05D006129 3.4e-07 57.8 36 66.7
HanXRQChr06g0165071 Helianthus annuus HOM05D000228 ORTHO05D006129 4.4e-07 57.4 39 59.0
Ciclev10018489m.g Citrus clementina HOM05D000228 ORTHO05D006129 5.8e-07 57.0 39 59.0
AUR62010662 Chenopodium quinoa HOM05D000228 ORTHO05D006129 7.6e-07 56.6 39 59.0
Glyma.01G215700 Glycine max HOM05D000228 ORTHO05D006129 1.3e-06 55.8 36 63.9
CAN.G981.44 Capsicum annuum HOM05D000228 ORTHO05D006129 1.7e-06 55.5 36 61.1
FvH4_5g01400 Fragaria vesca HOM05D000228 ORTHO05D006129 1.7e-06 55.5 38 63.2
FAN04G1469 Fragaria x ananassa HOM05D000228 ORTHO05D006129 1.7e-06 55.5 38 63.2
FAN08G3600 Fragaria x ananassa HOM05D000228 ORTHO05D006129 1.7e-06 55.5 38 63.2
FAN13G2476 Fragaria x ananassa HOM05D000228 ORTHO05D006129 1.7e-06 55.5 38 63.2
FAN18G2520 Fragaria x ananassa HOM05D000228 ORTHO05D006129 1.7e-06 55.5 38 63.2
Nitab4.5_0001714g0190 Nicotiana tabacum HOM05D000228 ORTHO05D006129 1.7e-06 55.5 36 58.3
Nitab4.5_0007891g0030 Nicotiana tabacum HOM05D000228 ORTHO05D006129 1.7e-06 55.5 36 58.3
Lj2C197T6 Lonicera japonica HOM05D000228 ORTHO05D006129 2.2e-06 55.1 43 51.2
CAN.G981.46 Capsicum annuum HOM05D000228 ORTHO05D006129 2.9e-06 54.7 36 61.1
Migut.A00916 Erythranthe guttata HOM05D000228 ORTHO05D006129 2.9e-06 54.7 35 60.0
RcHm_v2.0_Chr7g0199481 Rosa chinensis HOM05D000228 ORTHO05D006129 2.9e-06 54.7 35 68.6
TAR636G2974 Trochodendron aralioides HOM05D000228 ORTHO05D006129 2.9e-06 54.7 39 61.5
MBI12_g02094_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D006129 3.7e-06 54.3 39 53.8
THA.LOC104809424 Tarenaya hassleriana HOM05D000228 ORTHO05D006129 6.4e-06 53.5 36 52.8
CANSAT21G2272 Cannabis sativa HOM05D000228 ORTHO05D006129 8.4e-06 53.1 36 61.1
MD04G1068800 Malus domestica HOM05D000228 ORTHO05D006129 8.4e-06 53.1 40 55.0


User provided reference genes

Program Settings