Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 0.0e+00 1400.2 700 100.0
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 0.0e+00 1374.8 709 96.6
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 0.0e+00 1221.1 705 85.1
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 0.0e+00 1219.9 710 84.9
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 0.0e+00 1209.1 708 83.6
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 0.0e+00 1199.9 703 83.8
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 0.0e+00 1193.3 705 83.7
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 0.0e+00 1186.4 703 83.5
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 0.0e+00 1185.2 704 82.5
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 0.0e+00 1182.9 704 82.7
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 0.0e+00 1130.2 708 79.2
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 0.0e+00 1126.3 710 79.6
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 0.0e+00 1110.9 708 76.7
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 0.0e+00 1106.3 708 76.7
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 0.0e+00 1104.7 708 76.8
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1102.0 708 76.6
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1100.5 708 76.4
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 0.0e+00 1099.3 707 76.7
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 0.0e+00 1098.2 708 76.8
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1097.4 711 77.4
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 0.0e+00 1097.4 708 76.7
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 0.0e+00 1096.3 708 76.3
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1093.2 711 77.6
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 0.0e+00 1092.8 708 75.8
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1085.5 714 76.2
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1082.4 706 75.1
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 0.0e+00 1080.9 708 75.1
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1080.1 708 75.1
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 0.0e+00 1079.7 711 75.1
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 0.0e+00 1075.8 715 75.9
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 4.8e-312 1073.5 715 75.7
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 9.6e-312 1073.2 704 75.1
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 9.6e-312 1072.8 708 75.3
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 4.3e-311 1070.8 715 75.9
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 2.3e-309 1065.1 696 74.7
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 2.4e-306 1055.0 710 73.8
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 4.1e-306 1054.3 713 71.8
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 1.2e-305 1052.7 710 73.1
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 1.2e-305 1052.7 707 74.7
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 3.9e-304 1047.7 705 76.6
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 4.3e-303 1044.3 707 73.8
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 7.3e-303 1043.5 799 67.8
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 4.7e-302 1040.8 707 72.6
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 1.4e-301 1039.3 708 72.9
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 4.0e-301 1037.7 713 72.2
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 5.2e-301 1037.3 706 72.5
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 4.4e-300 1034.2 707 72.3
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 2.2e-299 1031.9 715 71.7
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 1.1e-298 1029.6 707 72.0
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 4.2e-298 1027.7 730 71.9
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 1.2e-297 1026.2 706 71.8
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 2.7e-297 1025.0 708 71.5
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 2.7e-297 1025.0 708 72.3
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 3.5e-297 1024.6 691 72.8
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 7.8e-297 1023.5 740 69.1
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 1.0e-296 1023.1 712 72.1
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 9.6e-295 1016.5 706 71.0
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 3.1e-293 1011.5 732 69.5
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 4.0e-293 1011.1 706 70.7
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 2.0e-292 1008.8 709 70.2
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 1.7e-291 1005.7 696 71.0
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 1.1e-290 1003.0 710 69.6
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 4.2e-290 1001.1 707 70.3
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 1.7e-288 995.7 690 70.9
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 3.9e-288 994.6 690 70.9
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 5.1e-288 994.2 690 70.6
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 6.6e-288 993.8 692 70.7
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 5.6e-287 990.7 720 69.4
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 1.6e-286 989.2 691 70.3
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 1.1e-285 986.5 705 69.9
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 5.3e-285 984.2 688 69.3
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 4.5e-284 981.1 702 69.9
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 7.6e-284 980.3 701 69.2
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 7.6e-284 980.3 701 68.8
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 4.9e-283 977.6 691 70.0
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 1.9e-282 975.7 699 69.0
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 4.2e-282 974.5 671 72.4
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 7.1e-282 973.8 691 69.0
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 1.1e-279 966.5 699 68.5
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 6.9e-277 957.2 707 68.6
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 2.6e-276 955.3 713 68.3
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 2.9e-275 951.8 687 68.6
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 2.5e-274 948.7 698 68.1
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 3.8e-267 924.9 692 64.7
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 5.5e-266 921.0 780 61.0
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 1.5e-263 912.9 709 64.5
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 2.2e-262 909.1 765 61.2
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 2.9e-259 898.7 594 73.4
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 6.5e-259 897.5 713 63.3
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 7.2e-258 894.0 585 75.4
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 3.7e-254 881.7 553 76.7
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 6.3e-254 880.9 678 64.7
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 3.1e-253 878.6 713 63.3
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 5.7e-247 857.8 716 62.3
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 9.7e-239 830.5 715 60.1
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 3.5e-236 822.0 703 59.7
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 5.5e-234 814.7 549 73.6
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 4.7e-225 785.0 517 75.4
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 8.6e-211 737.6 689 53.6
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 4.4e-207 725.3 729 56.0
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 1.5e-202 710.3 687 53.3
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 8.1e-185 651.4 689 49.5
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 4.0e-184 649.0 874 42.6
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 1.8e-176 623.6 440 69.5
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 4.6e-172 609.0 842 42.3
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 3.7e-161 572.8 386 72.3
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 3.1e-160 569.7 682 46.3
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 7.6e-151 538.5 488 56.6
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 1.5e-146 524.2 727 42.6
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 8.2e-145 518.5 727 42.4
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 1.2e-132 478.0 744 39.5
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 1.8e-131 474.2 694 39.5
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 1.7e-126 457.6 812 36.3
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 2.6e-114 417.2 337 66.5
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 3.4e-114 416.8 304 70.4
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 2.4e-112 410.6 362 58.8
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 1.8e-75 288.1 266 55.3
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 8.9e-75 285.8 191 72.3
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 9.3e-64 249.2 185 65.9
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 2.1e-60 238.0 132 88.6
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.1e-56 225.7 154 70.8
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 2.7e-39 167.9 102 79.4
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 5.1e-38 163.7 114 70.2
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 9.7e-37 159.5 110 77.3
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 5.0e-33 147.1 120 58.3
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 3.3e-29 134.4 100 72.0
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 3.4e-26 124.4 85 65.9
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 6.7e-22 110.2 61 82.0
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 1.1e-21 109.4 168 44.0
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 1.5e-18 99.0 62 71.0
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 1.4e-16 92.4 61 73.8
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 5.5e-16 90.5 59 71.2
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 1.6e-10 72.4 41 75.6
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 2.5e-08 65.1 50 60.0
SHI28556 Sapria himalayana HOM05D005873 ORTHO05D007582 1.6e-07 62.4 51 54.9
RcHm_v2.0_Chr2g0132441 Rosa chinensis HOM05D005873 ORTHO05D007582 2.7e-07 61.6 59 61.0


User provided reference genes

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