Gene: TPR.G23454
General Information
Structural Information
- Species Trifolium pratense
- Gene Identifier TPR.G23454
- Transcript Identifier TPR.T24262
- Gene Type Coding gene
- Location Tp57577_TGAC_v2_LG3 : 1027285-1038296 : negative
Gene Family Information
- ID HOM05D001972
- #Genes/#Species 335/98
- Phylogenetic origin
- ID ORTHO05D002555
- #Genes/#Species 279/97
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Tp57577_TGAC_v2_mRNA24262.v2
- id Tp57577_TGAC_v2_gene23454.v2
- pacid 35990213
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0032776 | ISO | PLAZA Integrative Orthology | DNA methylation on cytosine | AT1G57820 |
| GO:0016567 | ISO | PLAZA Integrative Orthology | protein ubiquitination | AT4G08590 |
| GO:0090309 | ISO | PLAZA Integrative Orthology | positive regulation of DNA methylation-dependent heterochromatin assembly | AT1G57820 |
| GO:0010228 | ISO | PLAZA Integrative Orthology | vegetative to reproductive phase transition of meristem | AT5G39550 |
| GO:0010424 | ISO | PLAZA Integrative Orthology | DNA methylation on cytosine within a CG sequence | AT1G57820 |
| GO:0031508 | ISO | PLAZA Integrative Orthology | pericentric heterochromatin assembly | AT1G57820 |
| GO:0051301 | ISO | PLAZA Integrative Orthology | cell division | AT1G57820 |
| GO:0006325 | ISO | PLAZA Integrative Orthology | chromatin organization | AT1G57820 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010429 | ISO | PLAZA Integrative Orthology | methyl-CpNpN binding | AT1G57820 |
| GO:0042393 | ISO | PLAZA Integrative Orthology | histone binding | AT1G57820 |
| GO:0046872 | IEA | InterPro | metal ion binding | |
| GO:0010428 | ISO | PLAZA Integrative Orthology | methyl-CpNpG binding | AT1G57820 |
| GO:0004842 | ISO | PLAZA Integrative Orthology | ubiquitin-protein transferase activity | AT4G08590 |
| GO:0008327 | ISO | PLAZA Integrative Orthology | methyl-CpG binding | AT1G57820 |
| GO:0003682 | ISO | PLAZA Integrative Orthology | chromatin binding | AT1G57820 |
| GO:0010385 | ISO | PLAZA Integrative Orthology | double-stranded methylated DNA binding | AT1G57820 |
| GO:0008641 | IEA | InterPro | ubiquitin-like modifier activating enzyme activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT4G08590 |
| GO:0010369 | ISO | PLAZA Integrative Orthology | chromocenter | AT1G57820 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G57820 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR018957 | Zinc finger, C3HC4 RING-type |
| IPR035985 | Ubiquitin-activating enzyme |
| IPR044861 | Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain |
| IPR011011 | Zinc finger, FYVE/PHD-type |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR003105 | SRA-YDG |
| IPR001841 | Zinc finger, RING-type |
| IPR027443 | Isopenicillin N synthase-like superfamily |
| IPR026992 | Non-haem dioxygenase N-terminal domain |
| IPR027370 | RING-type zinc-finger, LisH dimerisation motif |
| IPR015947 | PUA-like superfamily |
| IPR001965 | Zinc finger, PHD-type |
| IPR045134 | UHRF1/2-like |
| IPR036987 | SRA-YDG superfamily |
| IPR000594 | THIF-type NAD/FAD binding fold |