Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.52E2E0 Arachis hypogaea HOM05D000104 ORTHO05D005769 4.0e-280 967.6 548 100.0
arahy.Tifrunner.gnm1.ann1.2E0FT9 Arachis hypogaea HOM05D000104 ORTHO05D005769 1.2e-215 753.4 462 94.6
Phvul.007G259200 Phaseolus vulgaris HOM05D000104 ORTHO05D005769 3.4e-186 655.6 542 72.9
TPR.G27751 Trifolium pratense HOM05D000104 ORTHO05D005769 4.5e-183 645.2 549 70.3
Glyma.09G112200 Glycine max HOM05D000104 ORTHO05D005769 5.9e-183 644.8 548 71.2
VMungo0720G3110 Vigna mungo HOM05D000104 ORTHO05D005769 3.3e-181 639.0 542 72.0
Glyma.02G174100 Glycine max HOM05D000104 ORTHO05D005769 2.1e-180 636.3 539 69.2
Ca_25705_v3 Cicer arietinum L. HOM05D000104 ORTHO05D005769 2.4e-176 622.9 550 67.1
Medtr1g053955 Medicago truncatula HOM05D000104 ORTHO05D005769 2.5e-173 612.8 544 68.9
Lalb_Chr21g0316431 Lupinus albus HOM05D000104 ORTHO05D005769 1.7e-166 590.1 537 67.2
Psat4g106680 Pisum sativum HOM05D000104 ORTHO05D005769 4.4e-162 575.5 552 64.1
Lj5g0023468 Lotus japonicus HOM05D000104 ORTHO05D005769 1.5e-154 550.4 538 66.0
Thecc.05G185200 Theobroma cacao HOM05D000104 ORTHO05D005769 1.3e-137 494.2 541 57.9
Dinv19274 Davidia involucrata HOM05D000104 ORTHO05D005769 2.1e-135 486.9 559 57.8
Duzib177G0813 Durio zibethinus HOM05D000104 ORTHO05D005769 1.3e-134 484.2 546 58.1
Gorai.004G264200 Gossypium raimondii HOM05D000104 ORTHO05D005769 1.1e-133 481.1 547 57.2
CiPaw.09G030900 Carya illinoinensis HOM05D000104 ORTHO05D005769 3.3e-133 479.6 558 55.2
Gohir.A08G227300 Gossypium hirsutum HOM05D000104 ORTHO05D005769 3.3e-133 479.6 548 57.3
QL07p023509 Quercus lobata HOM05D000104 ORTHO05D005769 2.6e-130 469.9 593 52.6
Prupe.4G135700 Prunus persica HOM05D000104 ORTHO05D005769 3.8e-129 466.1 619 52.8
TWI23G0183 Tripterygium wilfordii HOM05D000104 ORTHO05D005769 4.9e-129 465.7 540 57.6
Dinv14287 Davidia involucrata HOM05D000104 ORTHO05D005769 4.2e-128 462.6 552 55.8
Atru.chr8.1089 Acer truncatum HOM05D000104 ORTHO05D005769 1.2e-127 461.1 547 55.9
TWI14G1199 Tripterygium wilfordii HOM05D000104 ORTHO05D005769 6.0e-127 458.8 533 56.5
GSVIVG01033511001 Vitis vinifera HOM05D000104 ORTHO05D005769 1.8e-126 457.2 554 55.8
PGR142G4395 Punica granatum HOM05D000104 ORTHO05D005769 7.4e-125 451.8 538 53.5
Potri.001G207700 Populus trichocarpa HOM05D000104 ORTHO05D005769 4.8e-124 449.1 533 56.5
Manes.15G110200 Manihot esculenta HOM05D000104 ORTHO05D005769 6.2e-124 448.7 545 53.2
Ciclev10010891m.g Citrus clementina HOM05D000104 ORTHO05D005769 1.4e-123 447.6 554 53.2
Gohir.D08G247700 Gossypium hirsutum HOM05D000104 ORTHO05D005769 1.5e-122 444.1 525 56.6
CiPaw.10G027000 Carya illinoinensis HOM05D000104 ORTHO05D005769 4.9e-121 439.1 544 55.0
Eucgr.K01834 Eucalyptus grandis HOM05D000104 ORTHO05D005769 1.1e-120 438.0 541 54.9
Sc11g0006160 Simmondsia chinensis HOM05D000104 ORTHO05D005769 1.9e-120 437.2 557 54.8
RcHm_v2.0_Chr5g0025621 Rosa chinensis HOM05D000104 ORTHO05D005769 5.5e-120 435.6 596 53.4
Sabra01G0160500 Salix brachista HOM05D000104 ORTHO05D005769 1.2e-119 434.5 533 55.2
Potri.003G022100 Populus trichocarpa HOM05D000104 ORTHO05D005769 2.3e-118 430.3 533 54.8
Thhalv10019875m.g Eutrema salsugineum HOM05D000104 ORTHO05D005769 1.1e-117 427.9 546 55.3
MELO3C009633.2 Cucumis melo HOM05D000104 ORTHO05D005769 1.9e-117 427.2 617 47.5
BcaB06g25509 Brassica carinata HOM05D000104 ORTHO05D005769 9.6e-117 424.9 541 54.0
FvH4_3g15170 Fragaria vesca HOM05D000104 ORTHO05D005769 1.3e-116 424.5 597 52.1
CsaV3_3G038900 Cucumis sativus L. HOM05D000104 ORTHO05D005769 2.8e-116 423.3 620 47.1
MSTRG.19900 Avicennia marina HOM05D000104 ORTHO05D005769 6.3e-116 422.2 552 52.9
BolC5t34177H Brassica oleracea HOM05D000104 ORTHO05D005769 6.3e-116 422.2 540 53.3
CAN.G570.8 Capsicum annuum HOM05D000104 ORTHO05D005769 6.3e-116 422.2 572 50.9
Cc06_g16020 Coffea canephora HOM05D000104 ORTHO05D005769 1.4e-115 421.0 552 52.5
THA.LOC104826283 Tarenaya hassleriana HOM05D000104 ORTHO05D005769 1.4e-115 421.0 552 52.2
BcaC05g29235 Brassica carinata HOM05D000104 ORTHO05D005769 2.4e-115 420.2 548 52.7
MD10G1206600 Malus domestica HOM05D000104 ORTHO05D005769 2.4e-115 420.2 631 51.2
BraA05t22469Z Brassica rapa HOM05D000104 ORTHO05D005769 4.1e-115 419.5 552 53.4
A05p36660 Brassica napus HOM05D000104 ORTHO05D005769 5.3e-115 419.1 549 52.8
C05p55090 Brassica napus HOM05D000104 ORTHO05D005769 2.6e-114 416.8 548 52.4
Rhsim03G0007000 Rhododendron simsii HOM05D000104 ORTHO05D005769 3.4e-114 416.4 560 51.8
Sopen03g015780 Solanum pennellii HOM05D000104 ORTHO05D005769 7.6e-114 415.2 548 52.7
Solyc03g063220.2 Solanum lycopersicum HOM05D000104 ORTHO05D005769 2.2e-113 413.7 548 52.0
Migut.J01827 Erythranthe guttata HOM05D000104 ORTHO05D005769 2.9e-113 413.3 552 50.2
AT3G12810 Arabidopsis thaliana HOM05D000104 ORTHO05D005769 1.1e-112 411.4 564 51.4
FAN25G3235 Fragaria x ananassa HOM05D000104 ORTHO05D005769 1.9e-112 410.6 597 51.3
AL3G24490 Arabidopsis lyrata HOM05D000104 ORTHO05D005769 1.2e-111 407.9 559 51.7
Sabra03G0014100 Salix brachista HOM05D000104 ORTHO05D005769 3.5e-111 406.4 691 44.4
PSO170G6710 Papaver somniferum HOM05D000104 ORTHO05D005769 4.6e-111 406.0 598 48.5
PSO528G0284 Papaver somniferum HOM05D000104 ORTHO05D005769 6.1e-111 405.6 592 48.1
TAR381G0643 Trochodendron aralioides HOM05D000104 ORTHO05D005769 1.9e-109 400.6 546 54.6
ECA248G0087 Erigeron canadensis HOM05D000104 ORTHO05D005769 5.7e-109 399.1 545 51.7
Peaxi162Scf00258g00431 Petunia axillaris HOM05D000104 ORTHO05D005769 3.7e-108 396.4 572 50.0
FAN11G3896 Fragaria x ananassa HOM05D000104 ORTHO05D005769 3.1e-107 393.3 595 50.4
FAN21G3997 Fragaria x ananassa HOM05D000104 ORTHO05D005769 2.6e-106 390.2 597 49.6
ClCG10G017460 Citrullus lanatus HOM05D000104 ORTHO05D005769 7.7e-106 388.7 623 45.9
Aa31LG8G90 Aethionema arabicum HOM05D000104 ORTHO05D005769 1.9e-104 384.0 549 48.1
Nitab4.5_0003890g0020 Nicotiana tabacum HOM05D000104 ORTHO05D005769 4.2e-104 382.9 663 44.5
CSS0012736 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D005769 5.5e-104 382.5 582 48.1
Nn5g28295 Nelumbo nucifera HOM05D000104 ORTHO05D005769 1.2e-103 381.3 535 52.1
Haze_19977 Corylus avellana HOM05D000104 ORTHO05D005769 6.1e-103 379.0 665 43.8
unitig_26.g9068 Utricularia gibba HOM05D000104 ORTHO05D005769 1.0e-102 378.3 548 48.7
SGA_v2.0_scaffold69G23071 Striga asiatica HOM05D000104 ORTHO05D005769 4.8e-100 369.4 560 48.6
HanXRQChr01g0026921 Helianthus annuus HOM05D000104 ORTHO05D005769 1.4e-99 367.9 541 48.6
SGA_v2.0_scaffold105G30483 Striga asiatica HOM05D000104 ORTHO05D005769 1.8e-99 367.5 548 47.1
Hund17598 Selenicereus undatus HOM05D000104 ORTHO05D005769 7.7e-98 362.1 591 46.5
HanXRQChr11g0348031 Helianthus annuus HOM05D000104 ORTHO05D005769 6.5e-97 359.0 539 48.6
ATR1152G044 Amborella trichopoda HOM05D000104 ORTHO05D005769 4.2e-96 356.3 622 46.1
DCAR_006645 Daucus carota HOM05D000104 ORTHO05D005769 1.4e-94 351.3 547 47.5
HPP92_024595 Vanilla planifolia HOM05D000104 ORTHO05D005769 1.8e-94 350.9 596 43.0
Oeu033742.2 Olea europaea HOM05D000104 ORTHO05D005769 5.1e-94 349.4 608 43.4
Zm00001eb251100 Zea mays HOM05D000104 ORTHO05D005769 6.7e-94 349.0 553 43.9
Nitab4.5_0000324g0220 Nicotiana tabacum HOM05D000104 ORTHO05D005769 2.0e-93 347.4 709 40.9
MBI16_g14599_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005769 3.3e-93 346.7 596 45.3
Aqoxy4G02068 Aquilegia oxysepala HOM05D000104 ORTHO05D005769 4.8e-92 342.8 552 44.9
SalBow6G1274 Salvia bowleyana HOM05D000104 ORTHO05D005769 1.6e-90 337.8 564 45.2
Lsat_1_v5_gn_1_55460 Lactuca sativa HOM05D000104 ORTHO05D005769 2.9e-89 333.6 540 45.7
CDE05G0740 Ceratophyllum demersum HOM05D000104 ORTHO05D005769 4.2e-88 329.7 539 46.9
Zm00001eb187690 Zea mays HOM05D000104 ORTHO05D005769 4.7e-87 326.2 557 42.4
Ah.13g077720 Amaranthus hybridus HOM05D000104 ORTHO05D005769 3.3e-85 320.1 573 42.9
MBI10_g44388_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005769 3.7e-84 316.6 604 43.4
CANSAT64G1790 Cannabis sativa HOM05D000104 ORTHO05D005769 1.0e-78 298.5 253 71.5
Actinidia22030 Actinidia chinensis HOM05D000104 ORTHO05D005769 1.4e-78 298.1 431 49.0
EL10Ac3g07414 Beta vulgaris HOM05D000104 ORTHO05D005769 5.4e-75 286.2 572 42.1
Carub.0003s1217 Capsella rubella HOM05D000104 ORTHO05D005769 2.0e-74 284.3 282 57.8
AUR62018509 Chenopodium quinoa HOM05D000104 ORTHO05D005769 3.7e-68 263.5 566 39.9
AUR62020910 Chenopodium quinoa HOM05D000104 ORTHO05D005769 1.7e-65 254.6 549 39.0
SHI16560 Sapria himalayana HOM05D000104 ORTHO05D005769 3.8e-65 253.4 229 62.9
Lj3C921T8 Lonicera japonica HOM05D000104 ORTHO05D005769 6.1e-63 246.1 449 43.0
MBI10_g00718_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005769 1.0e-54 218.8 505 41.8
CANSAT64G2572 Cannabis sativa HOM05D000104 ORTHO05D005769 2.6e-53 214.2 294 51.4
Sed0012301 Sechium edule HOM05D000104 ORTHO05D005769 1.1e-51 208.8 230 52.6
Mapoly0111s0052 Marchantia polymorpha HOM05D000104 ORTHO05D005769 5.4e-51 206.5 838 28.8
Pp3c10_13800 Physcomitrium patens HOM05D000104 ORTHO05D005769 3.5e-50 203.8 867 30.2
AagrBONN_evm.TU.Sc2ySwM_340.21 Anthoceros agrestis HOM05D000104 ORTHO05D005769 4.6e-50 203.4 547 34.6
Oeu063882.1 Olea europaea HOM05D000104 ORTHO05D005769 1.2e-45 188.7 126 77.8
Cpa.g.sc34.19 Carica papaya HOM05D000104 ORTHO05D005769 1.6e-42 178.3 199 56.3
Carub.0003s1218 Capsella rubella HOM05D000104 ORTHO05D005769 1.0e-41 175.6 220 55.0
COL.COLO4_22907 Corchorus olitorius HOM05D000104 ORTHO05D005769 1.9e-40 171.4 475 34.1
Lj3C919G8 Lonicera japonica HOM05D000104 ORTHO05D005769 8.1e-39 166.0 473 35.3
Sed0011551 Sechium edule HOM05D000104 ORTHO05D005769 3.1e-38 164.1 176 58.0
CARHR087340 Cardamine hirsuta HOM05D000104 ORTHO05D005769 2.6e-37 161.0 219 52.5
MBI10_g00720_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005769 6.4e-36 156.4 96 82.3
Oeu040389.1 Olea europaea HOM05D000104 ORTHO05D005769 7.8e-34 149.4 276 41.3
Gohir.D04G099250 Gossypium hirsutum HOM05D000104 ORTHO05D005769 1.3e-33 148.7 168 56.5
Gorai.009G401900 Gossypium raimondii HOM05D000104 ORTHO05D005769 3.3e-32 144.1 168 56.0
Sp3g10970 Schrenkiella parvula HOM05D000104 ORTHO05D005769 6.4e-28 129.8 158 56.3
Pp3c3_30220 Physcomitrium patens HOM05D000104 ORTHO05D005769 1.3e-25 122.1 753 26.3
Cpa.g.c39138 Carica papaya HOM05D000104 ORTHO05D005769 3.0e-25 120.9 63 92.1
Lj3A919G40 Lonicera japonica HOM05D000104 ORTHO05D005769 8.7e-25 119.4 71 83.1
CBR_g19274 Chara braunii HOM05D000104 ORTHO05D005769 1.5e-24 118.6 132 51.5
MCO13G222 Micromonas commoda HOM05D000104 ORTHO05D005769 7.3e-24 116.3 537 30.0
MCO13G223 Micromonas commoda HOM05D000104 ORTHO05D005769 7.3e-24 116.3 537 30.0
FAN16G1962 Fragaria x ananassa HOM05D000104 ORTHO05D005769 9.6e-24 115.9 121 62.0
SHI16561 Sapria himalayana HOM05D000104 ORTHO05D005769 1.1e-22 112.5 79 72.2
Cre14.g618860 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D005769 4.0e-22 110.5 126 45.2
PRCOL_00002928 Prasinoderma coloniale HOM05D000104 ORTHO05D005769 4.9e-20 103.6 253 32.4
Lj3C921G6 Lonicera japonica HOM05D002180 ORTHO05D001339 4.8e-15 87.0 51 80.4
MSTRG.12779 Avicennia marina HOM05D002628 ORTHO05D002785 1.5e-08 65.5 78 43.6
SalBow3G0995 Salvia bowleyana HOM05D002628 ORTHO05D002785 2.5e-08 64.7 93 38.7
Ciclev10018446m.g Citrus clementina HOM05D002628 ORTHO05D002785 7.4e-08 63.2 87 41.4
CBR_g6670 Chara braunii HOM05D000019 ORTHO05D000002 9.6e-08 62.8 121 36.4
CANSAT01G2524 Cannabis sativa HOM05D002628 ORTHO05D002785 1.6e-07 62.0 117 37.6
Pp3c7_10800 Physcomitrium patens HOM05D002628 ORTHO05D002785 3.7e-07 60.8 88 39.8
VMungo1215G2695 Vigna mungo HOM05D008141 ORTHO05D008631 4.8e-07 60.5 82 47.6
Migut.N00621 Erythranthe guttata HOM05D002628 ORTHO05D002785 8.1e-07 59.7 83 39.8
Eucgr.H00795 Eucalyptus grandis HOM05D002628 ORTHO05D002785 8.1e-07 59.7 83 41.0
SGA_v2.0_scaffold6G03236 Striga asiatica HOM05D002628 ORTHO05D002785 1.1e-06 59.3 125 31.2
Atru.chr5.2101 Acer truncatum HOM05D002628 ORTHO05D002785 1.4e-06 58.9 87 40.2
MSTRG.18000 Avicennia marina HOM05D002628 ORTHO05D002785 1.4e-06 58.9 105 34.3
SalBow6G2694 Salvia bowleyana HOM05D002628 ORTHO05D002785 1.4e-06 58.9 94 39.4
SalBow6G7039 Salvia bowleyana HOM05D002628 ORTHO05D002785 1.4e-06 58.9 94 39.4
CDE07G1586 Ceratophyllum demersum HOM05D002628 ORTHO05D002785 1.8e-06 58.5 109 33.9
COL.COLO4_15677 Corchorus olitorius HOM05D002628 ORTHO05D002785 1.8e-06 58.5 86 41.9
Manes.12G045400 Manihot esculenta HOM05D002628 ORTHO05D002785 2.4e-06 58.2 89 39.3
Oeu004073.1 Olea europaea HOM05D002628 ORTHO05D002785 2.4e-06 58.2 132 34.1
Sabra14G0142700 Salix brachista HOM05D002628 ORTHO05D002785 2.4e-06 58.2 86 40.7
SGA_v2.0_scaffold3G01640 Striga asiatica HOM05D002628 ORTHO05D002785 2.4e-06 58.2 160 30.6
TWI36G1593 Tripterygium wilfordii HOM05D002628 ORTHO05D002785 2.4e-06 58.2 82 41.5
Duzib211G0579 Durio zibethinus HOM05D002628 ORTHO05D002785 4.0e-06 57.4 89 40.4
Actinidia40433 Actinidia chinensis HOM05D000104 ORTHO05D005769 5.3e-06 57.0 62 62.9
Gohir.A11G137900 Gossypium hirsutum HOM05D002628 ORTHO05D002785 5.3e-06 57.0 116 37.9
Prupe.8G201800 Prunus persica HOM05D002628 ORTHO05D002785 5.3e-06 57.0 88 40.9
BcaB06g26704 Brassica carinata HOM05D002628 ORTHO05D002785 6.9e-06 56.6 79 39.2
Sopen06g034780 Solanum pennellii HOM05D002628 ORTHO05D002785 6.9e-06 56.6 140 28.6
CDE04G0039 Ceratophyllum demersum HOM05D002628 ORTHO05D002785 9.0e-06 56.2 109 33.9
DCAR_012652 Daucus carota HOM05D002628 ORTHO05D002785 9.0e-06 56.2 114 34.2
Dinv12687 Davidia involucrata HOM05D002628 ORTHO05D002785 9.0e-06 56.2 89 41.6
Gorai.007G155000 Gossypium raimondii HOM05D002628 ORTHO05D002785 9.0e-06 56.2 116 37.1
Potri.014G189900 Populus trichocarpa HOM05D002628 ORTHO05D002785 9.0e-06 56.2 77 37.7
Solyc06g083420.3 Solanum lycopersicum HOM05D002628 ORTHO05D002785 9.0e-06 56.2 140 27.9
Thecc.01G224600 Theobroma cacao HOM05D002628 ORTHO05D002785 9.0e-06 56.2 89 39.3


User provided reference genes

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