Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.4VI0YY Arachis hypogaea HOM05D002391 ORTHO05D003966 7.5e-55 218.4 301 100.0
arahy.Tifrunner.gnm1.ann1.RPDR7L Arachis hypogaea HOM05D002391 ORTHO05D003966 3.0e-35 153.3 335 82.7
arahy.Tifrunner.gnm1.ann1.0D88S7 Arachis hypogaea HOM05D002391 ORTHO05D003966 1.1e-34 151.4 84 85.7
arahy.Tifrunner.gnm1.ann1.X7MPPU Arachis hypogaea HOM05D002391 ORTHO05D003966 4.3e-34 149.4 84 84.5
arahy.Tifrunner.gnm1.ann1.LY1D8B Arachis hypogaea HOM05D002391 ORTHO05D003966 1.2e-33 147.9 83 85.5
arahy.Tifrunner.gnm1.ann1.M8XQ0K Arachis hypogaea HOM05D002391 ORTHO05D003966 1.2e-31 141.4 84 81.0
Medtr7g118240 Medicago truncatula HOM05D002391 ORTHO05D003966 5.8e-31 139.0 84 73.8
TPR.G4775 Trifolium pratense HOM05D002391 ORTHO05D003966 1.4e-29 134.4 84 71.4
Prupe.2G196300 Prunus persica HOM05D002391 ORTHO05D003966 2.4e-29 133.7 84 69.0
Lalb_Chr15g0076551 Lupinus albus HOM05D002391 ORTHO05D003966 5.4e-29 132.5 84 71.4
MD01G1088700 Malus domestica HOM05D002391 ORTHO05D003966 9.3e-29 131.7 84 67.9
RcHm_v2.0_Chr1g0361141 Rosa chinensis HOM05D002391 ORTHO05D003966 9.3e-29 131.7 84 67.9
Thecc.01G333200 Theobroma cacao HOM05D002391 ORTHO05D003966 2.7e-28 130.2 84 67.9
Cpa.g.sc193.15 Carica papaya HOM05D002391 ORTHO05D003966 3.5e-28 129.8 84 71.4
Manes.01G239601 Manihot esculenta HOM05D002391 ORTHO05D003966 4.6e-28 129.4 84 67.9
FAN03G1958 Fragaria x ananassa HOM05D002391 ORTHO05D003966 6.0e-28 129.0 84 65.5
Ca_09548_v3 Cicer arietinum L. HOM05D002391 ORTHO05D003966 7.8e-28 128.6 84 69.0
Lj1g0027291 Lotus japonicus HOM05D002391 ORTHO05D003966 7.8e-28 128.6 84 69.0
GSVIVG01027442001 Vitis vinifera HOM05D002391 ORTHO05D003966 7.8e-28 128.6 84 67.9
Duzib138G0669 Durio zibethinus HOM05D002391 ORTHO05D003966 1.0e-27 128.3 84 67.9
FAN06G0076 Fragaria x ananassa HOM05D002391 ORTHO05D003966 1.0e-27 128.3 84 65.5
VMungo1309G2974 Vigna mungo HOM05D002391 ORTHO05D003966 1.0e-27 128.3 84 71.4
Phvul.009G258200 Phaseolus vulgaris HOM05D002391 ORTHO05D003966 1.7e-27 127.5 84 70.2
COL.COLO4_23049 Corchorus olitorius HOM05D002391 ORTHO05D003966 2.3e-27 127.1 84 66.7
FvH4_7g17740 Fragaria vesca HOM05D002391 ORTHO05D003966 2.3e-27 127.1 84 65.5
FAN06G1021 Fragaria x ananassa HOM05D002391 ORTHO05D003966 2.3e-27 127.1 84 65.5
Glyma.03G261200 Glycine max HOM05D002391 ORTHO05D003966 8.7e-27 125.2 84 66.7
Sed0015036 Sechium edule HOM05D002391 ORTHO05D003966 8.7e-27 125.2 84 67.9
Cfa003698 Carpinus fangiana HOM05D002391 ORTHO05D003966 1.9e-26 124.0 84 65.5
Atru.chr5.770 Acer truncatum HOM05D002391 ORTHO05D003966 2.5e-26 123.6 84 64.3
Haze_15788 Corylus avellana HOM05D002391 ORTHO05D003966 2.5e-26 123.6 84 65.5
PGR102G0931 Punica granatum HOM05D002391 ORTHO05D003966 2.5e-26 123.6 84 66.7
TWI59G0940 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 2.5e-26 123.6 84 65.5
Ciclev10023955m.g Citrus clementina HOM05D002391 ORTHO05D003966 5.6e-26 122.5 84 64.3
Gohir.D12G120300 Gossypium hirsutum HOM05D002391 ORTHO05D003966 7.3e-26 122.1 84 64.3
Gohir.D12G193700 Gossypium hirsutum HOM05D002391 ORTHO05D003966 7.3e-26 122.1 84 64.3
Peaxi162Scf00003g00042 Petunia axillaris HOM05D002391 ORTHO05D003966 7.3e-26 122.1 84 65.5
Nitab4.5_0000755g0080 Nicotiana tabacum HOM05D002391 ORTHO05D003966 1.3e-25 121.3 84 65.5
Nitab4.5_0009345g0010 Nicotiana tabacum HOM05D002391 ORTHO05D003966 1.3e-25 121.3 84 65.5
PGSC0003DMG400026340 Solanum tuberosum HOM05D002391 ORTHO05D003966 1.3e-25 121.3 84 65.5
SalBow1G8542 Salvia bowleyana HOM05D002391 ORTHO05D003966 1.6e-25 120.9 84 64.3
MELO3C025032.2 Cucumis melo HOM05D002391 ORTHO05D003966 2.8e-25 120.2 84 65.5
Solyc11g068470.3 Solanum lycopersicum HOM05D002391 ORTHO05D003966 2.8e-25 120.2 84 64.3
ClCG08G002040 Citrullus lanatus HOM05D002391 ORTHO05D003966 3.6e-25 119.8 84 63.1
Gohir.A12G116801 Gossypium hirsutum HOM05D002391 ORTHO05D003966 3.6e-25 119.8 84 63.1
CsaV3_6G002540 Cucumis sativus L. HOM05D002391 ORTHO05D003966 4.8e-25 119.4 84 65.5
Gorai.008G131000 Gossypium raimondii HOM05D002391 ORTHO05D003966 4.8e-25 119.4 84 63.1
Lj7E577T0 Lonicera japonica HOM05D002391 ORTHO05D003966 4.8e-25 119.4 84 61.9
Migut.D01237 Erythranthe guttata HOM05D002391 ORTHO05D003966 8.1e-25 118.6 84 63.1
Eucgr.H00258 Eucalyptus grandis HOM05D002391 ORTHO05D003966 8.1e-25 118.6 84 61.9
CAN.G1524.2 Capsicum annuum HOM05D002391 ORTHO05D003966 1.4e-24 117.9 84 64.3
Cc04_g09230 Coffea canephora HOM05D002391 ORTHO05D003966 1.4e-24 117.9 83 61.4
Sopen11g027180 Solanum pennellii HOM05D002391 ORTHO05D003966 1.8e-24 117.5 84 63.1
CiPaw.15G076300 Carya illinoinensis HOM05D002391 ORTHO05D003966 2.4e-24 117.1 84 61.9
Eucgr.L01374 Eucalyptus grandis HOM05D002391 ORTHO05D003966 3.1e-24 116.7 84 60.7
QL04p053388 Quercus lobata HOM05D002391 ORTHO05D003966 3.1e-24 116.7 84 63.1
Sabra14G0078000 Salix brachista HOM05D002391 ORTHO05D003966 3.1e-24 116.7 84 63.1
Oeu035561.1 Olea europaea HOM05D002391 ORTHO05D003966 4.0e-24 116.3 84 61.9
HanXRQChr13g0401531 Helianthus annuus HOM05D002391 ORTHO05D003966 5.3e-24 115.9 84 60.7
Lsat_1_v5_gn_6_26301 Lactuca sativa HOM05D002391 ORTHO05D003966 6.9e-24 115.5 83 62.7
MSTRG.12369 Avicennia marina HOM05D002391 ORTHO05D003966 9.0e-24 115.2 84 60.7
CiPaw.15G076400 Carya illinoinensis HOM05D002391 ORTHO05D003966 1.5e-23 114.4 84 60.7
ECA233G3883 Erigeron canadensis HOM05D000327 ORTHO05D000218 1.5e-23 114.4 84 61.9
CANSAT35G0902 Cannabis sativa HOM05D002391 ORTHO05D003966 3.4e-23 113.2 82 62.2
HanXRQChr15g0482971 Helianthus annuus HOM05D002391 ORTHO05D003966 3.4e-23 113.2 84 59.5
Potri.014G105900 Populus trichocarpa HOM05D002391 ORTHO05D003966 3.4e-23 113.2 83 61.4
Aa31LG5G1170 Aethionema arabicum HOM05D002391 ORTHO05D004870 4.5e-23 112.8 83 60.2
AL6G52005 Arabidopsis lyrata HOM05D002391 ORTHO05D004870 5.8e-23 112.5 84 59.5
Aqoxy7G00567 Aquilegia oxysepala HOM05D002391 ORTHO05D003966 7.6e-23 112.1 85 56.5
Carub.0006s3579 Capsella rubella HOM05D002391 ORTHO05D003966 1.3e-22 111.3 84 58.3
Sc01g0002180 Simmondsia chinensis HOM05D002391 ORTHO05D003966 1.3e-22 111.3 84 56.0
THA.LOC104825900 Tarenaya hassleriana HOM05D002391 ORTHO05D003966 1.3e-22 111.3 84 58.3
EL10Ac1g00185 Beta vulgaris HOM05D002391 ORTHO05D003966 1.7e-22 110.9 82 56.1
DCAR_007693 Daucus carota HOM05D002391 ORTHO05D003966 1.7e-22 110.9 84 58.3
AT4G01400 Arabidopsis thaliana HOM05D002391 ORTHO05D003966 2.2e-22 110.5 84 58.3
Thhalv10028369m.g Eutrema salsugineum HOM05D002391 ORTHO05D004870 3.8e-22 109.8 84 59.5
A01p25040 Brassica napus HOM05D002391 ORTHO05D003966 4.9e-22 109.4 84 57.1
BraA01t02415Z Brassica rapa HOM05D002391 ORTHO05D003966 4.9e-22 109.4 84 57.1
CSS0012072 Camellia sinensis var. sinensis HOM05D002391 ORTHO05D003966 4.9e-22 109.4 84 57.1
Ah.05g178930 Amaranthus hybridus HOM05D002391 ORTHO05D003966 6.4e-22 109.0 82 56.1
SGA_v2.0_scaffold6G03348 Striga asiatica HOM05D002391 ORTHO05D003966 6.4e-22 109.0 83 57.8
BcaB05g23974 Brassica carinata HOM05D002391 ORTHO05D003966 1.1e-21 108.2 84 58.3
CSS0033944 Camellia sinensis var. sinensis HOM05D002391 ORTHO05D003966 1.1e-21 108.2 84 57.1
Gohir.D01G143333 Gossypium hirsutum HOM05D002391 ORTHO05D003966 1.4e-21 107.8 84 56.0
Gorai.002G176800 Gossypium raimondii HOM05D002391 ORTHO05D003966 1.4e-21 107.8 84 56.0
BcaC09g49919 Brassica carinata HOM05D006526 ORTHO05D008496 1.9e-21 107.5 84 57.1
C01p31270 Brassica napus HOM05D002391 ORTHO05D003966 1.9e-21 107.5 84 57.1
BolC1t03066H Brassica oleracea HOM05D002391 ORTHO05D003966 1.9e-21 107.5 84 57.1
CSS0028258 Camellia sinensis var. sinensis HOM05D002391 ORTHO05D003966 1.9e-21 107.5 84 56.0
Gohir.A10G122550 Gossypium hirsutum HOM05D002391 ORTHO05D003966 1.9e-21 107.5 84 57.1
arahy.Tifrunner.gnm1.ann1.YN16U1 Arachis hypogaea HOM05D002391 ORTHO05D003966 5.4e-21 105.9 65 81.5
AUR62028893 Chenopodium quinoa HOM05D002391 ORTHO05D003966 5.4e-21 105.9 82 56.1
FAN01G1237 Fragaria x ananassa HOM05D002391 ORTHO05D003966 2.1e-20 104.0 65 69.2
Actinidia28084 Actinidia chinensis HOM05D002391 ORTHO05D003966 2.7e-20 103.6 84 59.5
Dinv29276 Davidia involucrata HOM05D002391 ORTHO05D003966 2.7e-20 103.6 85 56.5
PSO782G4179 Papaver somniferum HOM05D002391 ORTHO05D003966 7.9e-20 102.1 84 53.6
TAR636G2081 Trochodendron aralioides HOM05D002391 ORTHO05D003966 7.9e-20 102.1 85 52.9
SHI03317 Sapria himalayana HOM05D002391 ORTHO05D003966 8.7e-19 98.6 87 54.0
AUR62005660 Chenopodium quinoa HOM05D002391 ORTHO05D003966 1.1e-18 98.2 82 52.4
PSO063G3400 Papaver somniferum HOM05D002391 ORTHO05D003966 1.5e-18 97.8 84 52.4
Gohir.A12G191400 Gossypium hirsutum HOM05D002391 ORTHO05D003966 1.9e-18 97.4 84 53.6
Gohir.A05G282701 Gossypium hirsutum HOM05D002391 ORTHO05D003966 1.4e-16 91.3 93 49.5
CDE04G2286 Ceratophyllum demersum HOM05D002391 ORTHO05D003966 6.0e-12 75.9 75 45.3
SEGI_01969 Sequoiadendron giganteum HOM05D002391 ORTHO05D003966 1.8e-11 74.3 84 41.7
MBI15_g16775_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D003966 5.1e-11 72.8 84 41.7
Lj2g0007949 Lotus japonicus HOM05D006858 ORTHO05D008767 2.4e-08 63.9 83 34.9
ATR0057G041 Amborella trichopoda HOM05D002391 ORTHO05D003966 4.0e-08 63.2 65 40.0
MBI12_g14499_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D003966 6.9e-08 62.4 62 43.5
Aa31LG9G16400 Aethionema arabicum HOM05D006858 ORTHO05D008767 4.9e-06 56.2 81 33.3
FAN18G3677 Fragaria x ananassa HOM05D002737 ORTHO05D009499 4.9e-06 56.2 85 36.5
CsaV3_7G008750 Cucumis sativus L. HOM05D006858 ORTHO05D008767 6.5e-06 55.8 76 35.5
COL.COLO4_32688 Corchorus olitorius HOM05D006858 ORTHO05D008767 8.4e-06 55.5 83 36.1


User provided reference genes

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