Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.49TA12 Arachis hypogaea HOM05D003520 ORTHO05D003332 0.0e+00 1771.1 1221 100.0
arahy.Tifrunner.gnm1.ann1.AR6NCQ Arachis hypogaea HOM05D003520 ORTHO05D003332 0.0e+00 1711.0 978 96.9
VMungo1215G1122 Vigna mungo HOM05D003520 ORTHO05D003332 2.5e-181 640.6 1041 43.1
Lalb_Chr09g0321101 Lupinus albus HOM05D003520 ORTHO05D003332 3.4e-178 630.2 1351 37.7
Lalb_Chr16g0389811 Lupinus albus HOM05D003520 ORTHO05D003332 3.5e-175 620.2 1104 45.0
Glyma.08G012000 Glycine max HOM05D003520 ORTHO05D003332 1.0e-174 618.6 1133 44.0
Phvul.002G155600 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 8.9e-171 605.5 1012 42.8
Glyma.05G205100 Glycine max HOM05D003520 ORTHO05D003332 4.3e-157 560.1 1219 39.7
Lj4g0003069 Lotus japonicus HOM05D003520 ORTHO05D003332 4.2e-144 516.9 1202 39.1
TPR.G12816 Trifolium pratense HOM05D003520 ORTHO05D003332 2.1e-132 478.0 1173 39.0
VMungo0251G2110 Vigna mungo HOM05D003520 ORTHO05D003332 7.6e-130 469.5 1327 34.4
Ca_17554_v3 Cicer arietinum L. HOM05D003520 ORTHO05D003332 2.4e-128 464.5 1061 36.3
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 1.4e-123 448.7 1266 35.2
arahy.Tifrunner.gnm1.ann1.RT2UP8 Arachis hypogaea HOM05D003520 ORTHO05D003332 1.2e-119 435.6 1003 37.6
Medtr8g096930 Medicago truncatula HOM05D003520 ORTHO05D003332 3.9e-118 430.6 1351 34.0
Psat7g035760 Pisum sativum HOM05D003520 ORTHO05D003332 3.6e-87 327.8 1139 33.2
QL12p017888 Quercus lobata HOM05D003520 ORTHO05D003332 3.1e-75 288.1 797 33.2
Cfa012135 Carpinus fangiana HOM05D003520 ORTHO05D003332 1.6e-74 285.8 796 32.4
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 1.4e-62 246.1 767 31.7
CiPaw.11G138700 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.8e-62 245.7 780 29.7
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 6.8e-54 217.2 1062 27.6
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 1.9e-51 209.1 1000 27.0
FvH4_5g01860 Fragaria vesca HOM05D003520 ORTHO05D003332 5.4e-51 207.6 891 26.6
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 2.7e-50 205.3 838 27.2
FAN18G3894 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.7e-49 202.6 888 26.2
FAN08G2904 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.9e-48 199.1 910 26.4
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 5.6e-48 197.6 1008 26.9
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 9.5e-48 196.8 1071 26.8
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 6.2e-47 194.1 828 26.9
FAN04G1936 Fragaria x ananassa HOM05D003520 ORTHO05D003332 8.1e-47 193.7 897 26.4
MD06G1076800 Malus domestica HOM05D003520 ORTHO05D003332 2.0e-45 189.1 1086 26.4
FAN13G1265 Fragaria x ananassa HOM05D003520 ORTHO05D003332 3.4e-45 188.3 884 26.0
RcHm_v2.0_Chr7g0198661 Rosa chinensis HOM05D003520 ORTHO05D003332 6.4e-44 184.1 1049 25.9
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 1.1e-43 183.3 840 26.7
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 7.1e-43 180.6 735 27.8
Dinv38981 Davidia involucrata HOM05D003520 ORTHO05D003332 2.7e-42 178.7 593 35.9
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 1.0e-41 176.8 1002 26.1
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 1.3e-41 176.4 987 26.4
Actinidia05219 Actinidia chinensis HOM05D003520 ORTHO05D003332 2.3e-41 175.6 761 35.1
Glyma.01G217800 Glycine max HOM05D003520 ORTHO05D003332 3.9e-41 174.9 247 47.8
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 9.5e-40 170.2 890 25.5
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.1e-34 152.5 868 26.8
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 4.6e-34 151.4 574 27.7
MSTRG.1884 Avicennia marina HOM05D003520 ORTHO05D003332 3.9e-33 148.3 633 32.5
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 5.6e-32 144.4 867 26.5
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 8.1e-31 140.6 856 25.9
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 1.2e-29 136.7 1005 25.6
Haze_08912 Corylus avellana HOM05D003520 ORTHO05D003332 8.4e-28 130.6 382 34.3
Haze_08915 Corylus avellana HOM05D003520 ORTHO05D003332 8.4e-28 130.6 382 34.3
CiPaw.12G096100 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.1e-27 130.2 705 27.1
GSVIVG01019812001 Vitis vinifera HOM05D000016 ORTHO05D000109 2.1e-26 125.9 569 25.8
TWI60G1121 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 4.6e-26 124.8 784 24.9
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 4.6e-26 124.8 561 27.5
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 7.8e-26 124.0 284 35.6
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 3.9e-25 121.7 301 30.2
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 1.1e-22 113.6 712 23.6
Cc08_g14270 Coffea canephora HOM05D003520 ORTHO05D003332 1.4e-22 113.2 743 30.6
Lsat_1_v5_gn_6_86801 Lactuca sativa HOM05D003520 ORTHO05D003332 2.4e-22 112.5 258 31.4
Oeu049557.4 Olea europaea HOM05D003520 ORTHO05D003332 9.0e-22 110.5 643 25.7
Glyma.11G025500 Glycine max HOM05D003520 ORTHO05D003332 1.5e-21 109.8 216 37.0
Hma1.2p1_0514F.1_g169820 Hydrangea macrophylla HOM05D003520 ORTHO05D003332 1.3e-20 106.7 221 29.9
SalBow1G4878 Salvia bowleyana HOM05D003520 ORTHO05D003332 1.7e-20 106.3 642 28.8
SGA_v2.0_scaffold144G35962 Striga asiatica HOM05D003520 ORTHO05D003332 4.9e-20 104.8 616 27.3
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 1.9e-19 102.8 786 22.4
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 2.4e-19 102.4 583 24.5
CSS0014139 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 5.4e-19 101.3 271 33.2
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 1.2e-18 100.1 237 30.8
Sopen08g029000 Solanum pennellii HOM05D003520 ORTHO05D003332 1.2e-18 100.1 426 24.9
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 1.6e-18 99.8 282 27.7
vmacro13941 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 1.6e-18 99.8 764 24.3
HanXRQChr03g0084491 Helianthus annuus HOM05D003520 ORTHO05D003332 6.0e-18 97.8 212 33.5
HanXRQChr13g0416181 Helianthus annuus HOM05D003520 ORTHO05D003332 1.8e-17 96.3 347 25.1
Solyc08g080690.4 Solanum lycopersicum HOM05D003520 ORTHO05D003332 1.8e-17 96.3 319 28.2
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 3.9e-17 95.1 285 28.1
AUR62010600 Chenopodium quinoa HOM05D003520 ORTHO05D003332 6.7e-17 94.4 461 25.2
Nitab4.5_0003604g0010 Nicotiana tabacum HOM05D003520 ORTHO05D003332 1.5e-16 93.2 314 30.6
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 1.5e-16 93.2 366 27.6
PSO478G3392 Papaver somniferum HOM05D003520 ORTHO05D003332 4.3e-16 91.7 285 27.7
Haze_13728 Corylus avellana HOM05D003520 ORTHO05D003332 7.4e-16 90.9 628 24.5
Lsat_1_v5_gn_6_101581 Lactuca sativa HOM05D003520 ORTHO05D003332 9.6e-16 90.5 247 29.1
CAN.G859.7 Capsicum annuum HOM05D003520 ORTHO05D003332 1.3e-15 90.1 695 27.3
Ciclev10004647m.g Citrus clementina HOM05D003520 ORTHO05D003332 1.3e-15 90.1 457 26.5
SGA_v2.0_scaffold385G50464 Striga asiatica HOM05D003520 ORTHO05D003332 1.6e-15 89.7 399 26.1
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 2.1e-15 89.4 228 30.7
Manes.14G027100 Manihot esculenta HOM05D003520 ORTHO05D003332 2.1e-15 89.4 414 27.5
QL09p014562 Quercus lobata HOM05D003520 ORTHO05D003332 2.1e-15 89.4 633 24.2
EL10Ac5g12763 Beta vulgaris HOM05D003520 ORTHO05D003332 2.8e-15 89.0 276 27.5
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 6.2e-15 87.8 594 25.1
Migut.E01117 Erythranthe guttata HOM05D003520 ORTHO05D003332 1.4e-14 86.7 240 42.1
vmacro13942 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 1.8e-14 86.3 264 28.8
Actinidia02028 Actinidia chinensis HOM05D003520 ORTHO05D003332 2.4e-14 85.9 756 23.5
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 3.1e-14 85.5 769 26.3
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 9.0e-14 84.0 585 25.0
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 1.2e-13 83.6 727 24.2
Rhsim07G0193900 Rhododendron simsii HOM05D003520 ORTHO05D003332 2.0e-13 82.8 141 40.4
Lsat_1_v5_gn_6_86841 Lactuca sativa HOM05D003520 ORTHO05D003332 2.6e-13 82.4 226 29.6
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 2.2e-12 79.3 264 26.5
Rhsim07G0193800 Rhododendron simsii HOM05D003520 ORTHO05D003332 3.8e-12 78.6 382 27.5
CiPaw.03G105100 Carya illinoinensis HOM05D003520 ORTHO05D003332 4.9e-12 78.2 652 24.7
CiPaw.04G065200 Carya illinoinensis HOM05D003520 ORTHO05D003332 4.9e-12 78.2 260 26.5
PGR142G4230 Punica granatum HOM05D003520 ORTHO05D003332 6.4e-12 77.8 160 33.1
Ah.12g057370 Amaranthus hybridus HOM05D003520 ORTHO05D003332 1.4e-11 76.6 776 22.6
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 3.2e-11 75.5 281 26.0
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 7.1e-11 74.3 895 23.1
Os04g0613800 Oryza sativa ssp. japonica HOM05D023145 ORTHO05D003332 7.1e-11 74.3 406 25.4
Sc22g0000330 Simmondsia chinensis HOM05D003520 ORTHO05D003332 7.1e-11 74.3 818 21.9
Eucgr.K00243 Eucalyptus grandis HOM05D003520 ORTHO05D003332 1.2e-10 73.6 645 23.9
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 1.2e-10 73.6 593 24.1
CAN.G1704.2 Capsicum annuum HOM05D012625 ORTHO05D003332 2.1e-10 72.8 553 23.5
Thecc.03G174900 Theobroma cacao HOM05D003520 ORTHO05D003332 2.7e-10 72.4 412 26.9
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 4.6e-10 71.6 296 25.3
Duzib205G1602 Durio zibethinus HOM05D003520 ORTHO05D003332 7.9e-10 70.9 630 24.3
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 1.3e-09 70.1 851 22.3
CsaV3_3G017000 Cucumis sativus L. HOM05D003520 ORTHO05D003332 2.3e-09 69.3 625 23.8
Zm00001eb430800 Zea mays HOM05D023145 ORTHO05D003332 2.3e-09 69.3 248 29.0
Nitab4.5_0003154g0060 Nicotiana tabacum HOM05D003520 ORTHO05D003332 3.0e-09 68.9 482 32.2
PGSC0003DMG400003059 Solanum tuberosum HOM05D003520 ORTHO05D003332 3.9e-09 68.6 352 27.0
CSS0024294 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 5.1e-09 68.2 92 43.5
Actinidia14538 Actinidia chinensis HOM05D003520 ORTHO05D003332 6.7e-09 67.8 854 22.5
CDE06G0068 Ceratophyllum demersum HOM05D003520 ORTHO05D003332 6.7e-09 67.8 88 44.3
Potri.012G138300 Populus trichocarpa HOM05D003520 ORTHO05D003332 8.7e-09 67.4 962 21.6
ECA238G2527 Erigeron canadensis HOM05D002097 ORTHO05D002248 1.1e-08 67.0 61 49.2
CiPaw.04G065400 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.5e-08 66.6 55 58.2
ECA238G0250 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.5e-08 66.6 52 57.7
ECA238G4163 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.5e-08 66.6 52 57.7
Psat2g183520 Pisum sativum HOM05D003520 ORTHO05D050397 1.9e-08 66.2 119 40.3
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 2.5e-08 65.9 557 22.1
THA.LOC104800257 Tarenaya hassleriana HOM05D012366 ORTHO05D003332 2.5e-08 65.9 67 49.3
Actinidia32870 Actinidia chinensis HOM05D003520 ORTHO05D003332 3.3e-08 65.5 394 25.1
ECA238G0526 Erigeron canadensis HOM05D002097 ORTHO05D003332 3.3e-08 65.5 52 57.7
HanXRQChr09g0253501 Helianthus annuus HOM05D003520 ORTHO05D003332 3.3e-08 65.5 69 46.4
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 3.3e-08 65.5 445 25.4
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 3.3e-08 65.5 445 25.4
Aa31LG3G8610 Aethionema arabicum HOM05D012366 ORTHO05D003332 4.3e-08 65.1 323 30.7
HanXRQChr15g0495611 Helianthus annuus HOM05D003520 ORTHO05D003332 7.4e-08 64.3 219 25.6
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 7.4e-08 64.3 560 23.0
Dinv28454 Davidia involucrata HOM05D003520 ORTHO05D003332 9.6e-08 63.9 278 29.1
Sed0005114 Sechium edule HOM05D003520 ORTHO05D003332 9.6e-08 63.9 571 23.6
GSVIVG01019811001 Vitis vinifera HOM05D000016 ORTHO05D000109 9.6e-08 63.9 228 29.8
Oeu056239.2 Olea europaea HOM05D003520 ORTHO05D003332 1.3e-07 63.5 566 22.8
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 1.6e-07 63.2 484 24.6
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 2.1e-07 62.8 682 23.6
Lsat_1_v5_gn_0_29760 Lactuca sativa HOM05D003520 ORTHO05D003332 2.8e-07 62.4 109 33.9
AT5G52230 Arabidopsis thaliana HOM05D012366 ORTHO05D003332 3.7e-07 62.0 285 24.2
Nn1g01417 Nelumbo nucifera HOM05D003520 ORTHO05D003332 3.7e-07 62.0 583 26.1
Phvul.004G117900 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 6.2e-07 61.2 621 22.2
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 6.2e-07 61.2 598 22.4
CARHR265160 Cardamine hirsuta HOM05D012366 ORTHO05D003332 8.1e-07 60.8 69 46.4
Ah.02g116500 Amaranthus hybridus HOM05D003520 ORTHO05D003332 1.1e-06 60.5 85 36.5
Zm00001eb171140 Zea mays HOM05D023145 ORTHO05D003332 1.1e-06 60.5 224 30.4
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 1.4e-06 60.1 101 32.7
PSO384G5141 Papaver somniferum HOM05D066660 ORTHO05D004692 1.4e-06 60.1 96 40.6
Sp6g14480 Schrenkiella parvula HOM05D012366 ORTHO05D003332 1.4e-06 60.1 633 24.6
Duzib205G1307 Durio zibethinus HOM05D003520 ORTHO05D003332 5.3e-06 58.2 210 23.8
SGA_v2.0_scaffold2G01065 Striga asiatica HOM05D003520 ORTHO05D003332 5.3e-06 58.2 779 22.5
AL8G26610 Arabidopsis lyrata HOM05D012366 ORTHO05D003332 6.9e-06 57.8 613 22.7
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 6.9e-06 57.8 68 48.5
CDE08G1317 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 9.0e-06 57.4 107 31.8
PSO339G5527 Papaver somniferum HOM05D066660 ORTHO05D004692 9.0e-06 57.4 96 39.6
TWI09G1536 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 9.0e-06 57.4 67 46.3


User provided reference genes

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