Gene: AT5G52230
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G52230
- Transcript Identifier AT5G52230.1
- Gene Type Coding gene
- Location Chr5 : 21208097-21211634 : negative
Gene Family Information
- ID HOM05D012366
- #Genes/#Species 14/11
- Phylogenetic origin
- ID ORTHO05D003332
- #Genes/#Species 230/88
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G52230.1
- symbol MBD13
- uniprot Q9LTJ8
Descriptions
- Description methyl-CPG-binding domain protein 13
- Computational description methyl-CPG-binding domain protein 13 (MBD13); FUNCTIONS IN: methyl-CpG binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); Has 6509 Blast hits to 4943 proteins in 596 species: Archae - 10; Bacteria - 822; Metazoa - 2790; Fungi - 554; Plants - 296; Viruses - 34; Other Eukaryotes - 2003 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008327 | ISS | Gene Ontology | methyl-CpG binding | 1 |
| GO:0003677 | IEA | GOA Database | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IDA IEA | GOA Database | nucleus | |
| GO:0005634 | HDA ISM | Gene Ontology | nucleus | 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR038945 | Methyl-CpG-binding domain-containing protein 13-like |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |