Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.2R11L5 Arachis hypogaea HOM05D001601 ORTHO05D002628 1.3e-33 145.6 65 100.0
arahy.Tifrunner.gnm1.ann1.JV7126 Arachis hypogaea HOM05D001601 ORTHO05D002628 8.4e-28 126.3 66 86.4
arahy.Tifrunner.gnm1.ann1.BX85EM Arachis hypogaea HOM05D001601 ORTHO05D002628 6.7e-25 116.7 86 65.1
Glyma.08G286500 Glycine max HOM05D001601 ORTHO05D002628 6.0e-18 93.6 59 61.0
Lalb_Chr09g0334991 Lupinus albus HOM05D001601 ORTHO05D002628 1.0e-17 92.8 66 53.0
Ca_22711_v3 Cicer arietinum L. HOM05D001601 ORTHO05D002628 1.1e-16 89.4 62 56.5
Phvul.003G060700 Phaseolus vulgaris HOM05D001601 ORTHO05D002628 1.6e-15 85.5 50 64.0
Medtr8g064700 Medicago truncatula HOM05D001601 ORTHO05D002628 2.1e-15 85.1 58 65.5
VMungo0251G2485 Vigna mungo HOM05D001601 ORTHO05D002628 2.1e-15 85.1 61 57.4
TPR.G7110 Trifolium pratense HOM05D001601 ORTHO05D002628 1.8e-14 82.0 44 68.2
Lj3A1054T81 Lonicera japonica HOM05D001601 ORTHO05D002628 2.0e-13 78.6 46 58.7
PGR119G0515 Punica granatum HOM05D001601 ORTHO05D002628 2.0e-13 78.6 50 62.0
Aa31LG1G4290 Aethionema arabicum HOM05D001601 ORTHO05D002628 2.6e-13 78.2 59 59.3
Peaxi162Scf00710g00416 Petunia axillaris HOM05D001601 ORTHO05D002628 7.6e-13 76.6 54 53.7
BcaC05g24950 Brassica carinata HOM05D001601 ORTHO05D002628 1.0e-12 76.3 40 72.5
Dinv24842 Davidia involucrata HOM05D000812 ORTHO05D002628 1.3e-12 75.9 44 61.4
A09p64950 Brassica napus HOM05D001601 ORTHO05D002628 1.7e-12 75.5 59 50.8
Carub.0001s1008 Capsella rubella HOM05D001601 ORTHO05D002628 1.7e-12 75.5 40 72.5
Haze_12188 Corylus avellana HOM05D001601 ORTHO05D002628 1.7e-12 75.5 42 66.7
Cfa009154 Carpinus fangiana HOM05D001601 ORTHO05D002628 2.2e-12 75.1 38 65.8
Lj4g0008008 Lotus japonicus HOM05D001601 ORTHO05D002628 2.2e-12 75.1 59 52.5
Sp1g09290 Schrenkiella parvula HOM05D001601 ORTHO05D002628 2.2e-12 75.1 40 70.0
vmacro16245 Vaccinium macrocarpon HOM05D001601 ORTHO05D002628 2.2e-12 75.1 57 52.6
EL10Ac6g13680 Beta vulgaris HOM05D001601 ORTHO05D002628 2.9e-12 74.7 54 53.7
Thhalv10007639m.g Eutrema salsugineum HOM05D001601 ORTHO05D002628 2.9e-12 74.7 44 65.9
Solyc05g005300.2 Solanum lycopersicum HOM05D001601 ORTHO05D002628 2.9e-12 74.7 44 59.1
CAN.G1731.6 Capsicum annuum HOM05D001601 ORTHO05D002628 3.8e-12 74.3 54 51.9
QL03p060111 Quercus lobata HOM05D001601 ORTHO05D002628 3.8e-12 74.3 38 68.4
AL1G21460 Arabidopsis lyrata HOM05D001601 ORTHO05D002628 6.5e-12 73.6 39 69.2
BcaB08g37364 Brassica carinata HOM05D001601 ORTHO05D002628 6.5e-12 73.6 40 70.0
BcaC07g41810 Brassica carinata HOM05D001601 ORTHO05D002628 6.5e-12 73.6 40 70.0
C08p48720 Brassica napus HOM05D001601 ORTHO05D002628 6.5e-12 73.6 40 70.0
BolC8t52411H Brassica oleracea HOM05D001601 ORTHO05D002628 6.5e-12 73.6 40 70.0
CAN.G682.3 Capsicum annuum HOM05D001601 ORTHO05D002628 6.5e-12 73.6 54 51.9
HanXRQChr17g0539631 Helianthus annuus HOM05D001601 ORTHO05D002628 6.5e-12 73.6 41 61.0
MD16G1093900 Malus domestica HOM05D001601 ORTHO05D002628 6.5e-12 73.6 46 60.9
BraA09t41838Z Brassica rapa HOM05D001601 ORTHO05D002628 1.1e-11 72.8 58 55.2
Duzib268G1820 Durio zibethinus HOM05D001601 ORTHO05D002628 1.1e-11 72.8 45 60.0
THA.LOC104819442 Tarenaya hassleriana HOM05D001601 ORTHO05D002628 1.1e-11 72.8 59 52.5
AT1G10610 Arabidopsis thaliana HOM05D001601 ORTHO05D002628 1.4e-11 72.4 39 69.2
TAR622G1239 Trochodendron aralioides HOM05D001601 ORTHO05D002628 1.4e-11 72.4 39 66.7
Lsat_1_v5_gn_3_27360 Lactuca sativa HOM05D001601 ORTHO05D002628 1.9e-11 72.0 41 61.0
BcaC05g24857 Brassica carinata HOM05D001601 ORTHO05D002628 2.5e-11 71.6 41 70.7
A06p07430 Brassica napus HOM05D001601 ORTHO05D002628 2.5e-11 71.6 41 70.7
C05p08930 Brassica napus HOM05D001601 ORTHO05D002628 2.5e-11 71.6 41 70.7
BolC5t29641H Brassica oleracea HOM05D001601 ORTHO05D002628 2.5e-11 71.6 41 70.7
Gorai.009G337700 Gossypium raimondii HOM05D001601 ORTHO05D002628 2.5e-11 71.6 51 52.9
Gohir.D05G313000 Gossypium hirsutum HOM05D001601 ORTHO05D002628 3.2e-11 71.2 51 52.9
COL.COLO4_24178 Corchorus olitorius HOM05D001601 ORTHO05D002628 5.5e-11 70.5 45 57.8
CSS0039169 Camellia sinensis var. sinensis HOM05D001601 ORTHO05D002628 7.2e-11 70.1 40 57.5
GSVIVG01013745001 Vitis vinifera HOM05D001601 ORTHO05D002628 7.2e-11 70.1 41 58.5
Gohir.A12G143000 Gossypium hirsutum HOM05D001601 ORTHO05D002628 9.3e-11 69.7 48 56.2
Gohir.D12G147800 Gossypium hirsutum HOM05D001601 ORTHO05D002628 9.3e-11 69.7 48 56.2
Gorai.008G159000 Gossypium raimondii HOM05D001601 ORTHO05D002628 9.3e-11 69.7 48 56.2
Lsat_1_v5_gn_8_155680 Lactuca sativa HOM05D001601 ORTHO05D002628 9.3e-11 69.7 57 47.4
Sabra08G0144000 Salix brachista HOM05D001601 ORTHO05D002628 1.6e-10 68.9 45 57.8
Nitab4.5_0001483g0050 Nicotiana tabacum HOM05D001601 ORTHO05D002628 2.7e-10 68.2 39 56.4
Oeu057821.1 Olea europaea HOM05D001601 ORTHO05D002628 2.7e-10 68.2 41 61.0
Cpa.g.sc69.52 Carica papaya HOM05D001601 ORTHO05D002628 3.5e-10 67.8 49 51.0
Prupe.1G252600 Prunus persica HOM05D001601 ORTHO05D002628 3.5e-10 67.8 39 64.1
TAR629G2382 Trochodendron aralioides HOM05D001601 ORTHO05D002628 3.5e-10 67.8 39 59.0
Ah.03g132740 Amaranthus hybridus HOM05D001601 ORTHO05D002628 4.6e-10 67.4 57 50.9
FAN07G1274 Fragaria x ananassa HOM05D001601 ORTHO05D002628 1.0e-09 66.2 37 67.6
FAN17G0319 Fragaria x ananassa HOM05D001601 ORTHO05D002628 1.0e-09 66.2 37 67.6
SGA_v2.0_scaffold4473G54491 Striga asiatica HOM05D001601 ORTHO05D002628 1.8e-09 65.5 58 48.3
AUR62005387 Chenopodium quinoa HOM05D001601 ORTHO05D002628 3.0e-09 64.7 54 48.1
FvH4_4g34320 Fragaria vesca HOM05D001601 ORTHO05D002628 3.0e-09 64.7 37 64.9
FAN12G3943 Fragaria x ananassa HOM05D001601 ORTHO05D002628 3.0e-09 64.7 37 64.9
RcHm_v2.0_Chr4g0443741 Rosa chinensis HOM05D001601 ORTHO05D002628 3.0e-09 64.7 37 64.9
Manes.12G028000 Manihot esculenta HOM05D001601 ORTHO05D002628 3.9e-09 64.3 34 67.6
BraA06t23947Z Brassica rapa HOM05D001601 ORTHO05D002628 6.7e-09 63.5 62 46.8
AUR62014049 Chenopodium quinoa HOM05D001601 ORTHO05D002628 8.7e-09 63.2 54 48.1
Sed0004702 Sechium edule HOM05D001601 ORTHO05D002628 8.7e-09 63.2 38 55.3
CiPaw.06G071400 Carya illinoinensis HOM05D001601 ORTHO05D002628 1.5e-08 62.4 69 40.6
PGR142G0329 Punica granatum HOM05D001601 ORTHO05D002628 1.5e-08 62.4 50 52.0
Cc01_g16050 Coffea canephora HOM05D001601 ORTHO05D002628 1.9e-08 62.0 54 46.3
MELO3C011994.2 Cucumis melo HOM05D001601 ORTHO05D002628 1.9e-08 62.0 49 49.0
MSTRG.18499 Avicennia marina HOM05D001601 ORTHO05D002628 2.5e-08 61.6 60 46.7
DCAR_007086 Daucus carota HOM05D001601 ORTHO05D002628 2.5e-08 61.6 41 53.7
SalBow6G5782 Salvia bowleyana HOM05D001601 ORTHO05D002628 2.5e-08 61.6 41 53.7
Potri.008G189600 Populus trichocarpa HOM05D001601 ORTHO05D002628 4.3e-08 60.8 34 61.8
CsaV3_5G031540 Cucumis sativus L. HOM05D001601 ORTHO05D002628 5.7e-08 60.5 39 59.0
DCAR_026538 Daucus carota HOM05D001601 ORTHO05D002628 9.7e-08 59.7 58 39.7
Aqoxy4G02705 Aquilegia oxysepala HOM05D001601 ORTHO05D002628 1.3e-07 59.3 39 59.0
FvH4_2g15460 Fragaria vesca HOM05D001601 ORTHO05D002628 1.3e-07 59.3 51 47.1
FAN24G0324 Fragaria x ananassa HOM05D001601 ORTHO05D002628 1.3e-07 59.3 51 47.1
FAN27G2066 Fragaria x ananassa HOM05D001601 ORTHO05D002628 1.3e-07 59.3 51 47.1
Thhalv10022620m.g Eutrema salsugineum HOM05D001601 ORTHO05D002628 1.6e-07 58.9 47 51.1
RcHm_v2.0_Chr6g0278441 Rosa chinensis HOM05D001601 ORTHO05D002628 2.2e-07 58.5 39 56.4
BcaB08g34676 Brassica carinata HOM05D001601 ORTHO05D002628 3.7e-07 57.8 48 47.9
BraA03t13741Z Brassica rapa HOM05D001601 ORTHO05D002628 3.7e-07 57.8 48 47.9
TPR.G2429 Trifolium pratense HOM05D001601 ORTHO05D002628 3.7e-07 57.8 38 60.5
Hund05998 Selenicereus undatus HOM05D001601 ORTHO05D002628 4.8e-07 57.4 55 47.3
Atru.chr5.3376 Acer truncatum HOM05D001601 ORTHO05D002628 6.3e-07 57.0 56 41.1
Aqoxy2G01591 Aquilegia oxysepala HOM05D001601 ORTHO05D002628 6.3e-07 57.0 39 56.4
BcaC01g02972 Brassica carinata HOM05D001601 ORTHO05D002628 6.3e-07 57.0 48 47.9
C03p57610 Brassica napus HOM05D001601 ORTHO05D002628 6.3e-07 57.0 48 47.9
BolC3t18036H Brassica oleracea HOM05D001601 ORTHO05D002628 6.3e-07 57.0 48 47.9
CSS0003134 Camellia sinensis var. sinensis HOM05D001601 ORTHO05D002628 6.3e-07 57.0 40 52.5
PSO017G3589 Papaver somniferum HOM05D001601 ORTHO05D002628 6.3e-07 57.0 39 51.3
PSO478G0528 Papaver somniferum HOM05D001601 ORTHO05D002628 6.3e-07 57.0 39 51.3
Thecc.02G058200 Theobroma cacao HOM05D001601 ORTHO05D002628 6.3e-07 57.0 52 48.1
AL3G49670 Arabidopsis lyrata HOM05D001601 ORTHO05D002628 8.2e-07 56.6 40 50.0
AT2G16910 Arabidopsis thaliana HOM05D001601 ORTHO05D002628 8.2e-07 56.6 40 50.0
BcaB03g16426 Brassica carinata HOM05D001601 ORTHO05D002628 8.2e-07 56.6 40 50.0
BcaC06g36193 Brassica carinata HOM05D001601 ORTHO05D002628 8.2e-07 56.6 40 50.0
A07p04210 Brassica napus HOM05D001601 ORTHO05D002628 8.2e-07 56.6 40 50.0
C07p06690 Brassica napus HOM05D001601 ORTHO05D002628 8.2e-07 56.6 40 50.0
BolC7t41091H Brassica oleracea HOM05D001601 ORTHO05D002628 8.2e-07 56.6 40 50.0
BraA07t28212Z Brassica rapa HOM05D001601 ORTHO05D002628 8.2e-07 56.6 40 50.0
Carub.0003s3072 Capsella rubella HOM05D001601 ORTHO05D002628 8.2e-07 56.6 40 50.0
CARHR107200 Cardamine hirsuta HOM05D001601 ORTHO05D002628 8.2e-07 56.6 40 50.0
Migut.D00743 Erythranthe guttata HOM05D001601 ORTHO05D002628 8.2e-07 56.6 52 46.2
FvH4_2g15470 Fragaria vesca HOM05D001601 ORTHO05D002628 8.2e-07 56.6 42 50.0
FAN27G2596 Fragaria x ananassa HOM05D001601 ORTHO05D002628 8.2e-07 56.6 42 50.0
Sp3g30190 Schrenkiella parvula HOM05D001601 ORTHO05D002628 8.2e-07 56.6 40 50.0
Cpa.g.sc20.95 Carica papaya HOM05D001601 ORTHO05D002628 1.1e-06 56.2 35 60.0
FAN20G0314 Fragaria x ananassa HOM05D001601 ORTHO05D002628 1.1e-06 56.2 51 45.1
unitig_62.g23863 Utricularia gibba HOM05D001601 ORTHO05D002628 1.1e-06 56.2 57 40.4
unitig_64.g29773 Utricularia gibba HOM05D001601 ORTHO05D002628 1.1e-06 56.2 57 40.4
MD05G1122900 Malus domestica HOM05D001601 ORTHO05D002628 1.4e-06 55.8 44 47.7
Ciclev10030105m.g Citrus clementina HOM05D001601 ORTHO05D002628 1.8e-06 55.5 51 43.1
MBI08_g34004_MAGBIO Magnolia biondii HOM05D001601 ORTHO05D002628 1.8e-06 55.5 41 53.7
RcHm_v2.0_Chr6g0278471 Rosa chinensis HOM05D001601 ORTHO05D002628 1.8e-06 55.5 42 50.0
Gohir.A12G036800 Gossypium hirsutum HOM05D001601 ORTHO05D002628 2.4e-06 55.1 52 46.2
Gohir.D12G035600 Gossypium hirsutum HOM05D001601 ORTHO05D002628 2.4e-06 55.1 52 46.2
Gorai.008G036900 Gossypium raimondii HOM05D001601 ORTHO05D002628 2.4e-06 55.1 52 46.2
QL11p050977 Quercus lobata HOM05D001601 ORTHO05D002628 2.4e-06 55.1 40 50.0
Rhsim05G0054400 Rhododendron simsii HOM05D001601 ORTHO05D002628 2.4e-06 55.1 40 50.0
FAN20G1511 Fragaria x ananassa HOM05D001601 ORTHO05D002628 3.1e-06 54.7 42 47.6
Manes.04G072000 Manihot esculenta HOM05D001601 ORTHO05D002628 4.1e-06 54.3 39 51.3
Peaxi162Scf00070g00045 Petunia axillaris HOM05D001601 ORTHO05D002628 5.3e-06 53.9 40 47.5
SMO266G0108 Selaginella moellendorffii HOM05D001601 ORTHO05D002628 5.3e-06 53.9 37 56.8
Solyc08g062780.2 Solanum lycopersicum HOM05D001601 ORTHO05D002628 5.3e-06 53.9 51 41.2
THA.LOC104819656 Tarenaya hassleriana HOM05D001601 ORTHO05D002628 5.3e-06 53.9 40 50.0
Psat6g232480 Pisum sativum HOM05D001601 ORTHO05D002628 6.9e-06 53.5 38 55.3
SGA_v2.0_scaffold124G33644 Striga asiatica HOM05D001601 ORTHO05D002628 6.9e-06 53.5 45 51.1
Glyma.10G281800 Glycine max HOM05D001601 ORTHO05D002628 9.0e-06 53.1 40 47.5
Glyma.20G107532 Glycine max HOM05D001601 ORTHO05D002628 9.0e-06 53.1 40 47.5
Medtr1g112680 Medicago truncatula HOM05D001601 ORTHO05D002628 9.0e-06 53.1 40 50.0
Psat4g124280 Pisum sativum HOM05D001601 ORTHO05D002628 9.0e-06 53.1 28 67.9
TWI75G1106 Tripterygium wilfordii HOM05D001601 ORTHO05D002628 9.0e-06 53.1 44 56.8


User provided reference genes

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