Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1PX64U Arachis hypogaea HOM05D004229 ORTHO05D005468 0.0e+00 1114.4 569 100.0
arahy.Tifrunner.gnm1.ann1.DJS8Z9 Arachis hypogaea HOM05D004229 ORTHO05D005468 2.7e-311 1071.2 567 97.0
arahy.Tifrunner.gnm1.ann1.LC1BQN Arachis hypogaea HOM05D004229 ORTHO05D005468 3.5e-311 1070.8 568 96.7
Glyma.10G208100 Glycine max HOM05D004229 ORTHO05D005468 5.4e-296 1020.4 596 87.2
arahy.Tifrunner.gnm1.ann1.LJ1MV6 Arachis hypogaea HOM05D004229 ORTHO05D005468 1.2e-295 1019.2 576 92.9
VMungo1080G0141 Vigna mungo HOM05D004229 ORTHO05D005468 2.1e-292 1008.4 596 86.2
Phvul.005G180400 Phaseolus vulgaris HOM05D004229 ORTHO05D005468 3.4e-290 1001.1 596 86.2
Ca_10545_v3 Cicer arietinum L. HOM05D004229 ORTHO05D005468 8.3e-289 996.5 596 85.2
Psat6g180120 Pisum sativum HOM05D004229 ORTHO05D005468 6.0e-287 990.3 596 83.6
Medtr1g094200 Medicago truncatula HOM05D004229 ORTHO05D005468 1.7e-286 988.8 596 83.9
Lj5g0013282 Lotus japonicus HOM05D004229 ORTHO05D005468 7.1e-280 966.8 583 84.6
arahy.Tifrunner.gnm1.ann1.EYW761 Arachis hypogaea HOM05D004229 ORTHO05D005468 1.9e-272 942.2 523 93.1
GSVIVG01016224001 Vitis vinifera HOM05D004229 ORTHO05D005468 3.3e-269 931.4 597 79.4
Prupe.2G209100 Prunus persica HOM05D004229 ORTHO05D005468 4.3e-269 931.0 594 79.0
Actinidia34806 Actinidia chinensis HOM05D004229 ORTHO05D005468 1.6e-268 929.1 596 78.4
CSS0012456 Camellia sinensis var. sinensis HOM05D004229 ORTHO05D005468 2.1e-268 928.7 596 78.7
TAR633G0060 Trochodendron aralioides HOM05D004229 ORTHO05D005468 1.4e-267 926.0 598 77.6
PGR142G2592 Punica granatum HOM05D004229 ORTHO05D005468 2.4e-267 925.2 596 78.7
arahy.Tifrunner.gnm1.ann1.ET3M0C Arachis hypogaea HOM05D004229 ORTHO05D005468 3.1e-267 924.9 575 85.6
QL08p054613 Quercus lobata HOM05D004229 ORTHO05D005468 4.0e-267 924.5 636 75.8
vmacro07123 Vaccinium macrocarpon HOM05D004229 ORTHO05D005468 1.2e-266 922.9 602 77.7
Actinidia38868 Actinidia chinensis HOM05D004229 ORTHO05D005468 2.6e-266 921.8 596 77.9
Sopen05g034050 Solanum pennellii HOM05D004229 ORTHO05D005468 9.9e-266 919.8 597 77.9
Thecc.10G082900 Theobroma cacao HOM05D004229 ORTHO05D005468 1.3e-265 919.5 596 77.7
FAN03G3391 Fragaria x ananassa HOM05D004229 ORTHO05D005468 3.8e-265 917.9 585 79.0
Solyc05g055600.4 Solanum lycopersicum HOM05D004229 ORTHO05D005468 4.9e-265 917.5 597 77.7
FAN10G0146 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.4e-264 916.0 585 78.8
Potri.008G035600 Populus trichocarpa HOM05D004229 ORTHO05D005468 4.2e-264 914.4 596 77.9
CANSAT56G0520 Cannabis sativa HOM05D004229 ORTHO05D005468 5.4e-264 914.1 597 78.4
FAN06G0013 Fragaria x ananassa HOM05D004229 ORTHO05D005468 5.4e-264 914.1 585 78.8
FAN06G0297 Fragaria x ananassa HOM05D004229 ORTHO05D005468 5.4e-264 914.1 585 78.8
ClCG05G021220 Citrullus lanatus HOM05D004229 ORTHO05D005468 9.3e-264 913.3 596 77.7
Gohir.D04G004600 Gossypium hirsutum HOM05D004229 ORTHO05D005468 1.6e-263 912.5 596 76.5
Gohir.A05G411400 Gossypium hirsutum HOM05D004229 ORTHO05D005468 2.1e-263 912.1 596 76.7
Rhsim03G0230200 Rhododendron simsii HOM05D004229 ORTHO05D005468 1.0e-262 909.8 633 73.8
FvH4_7g18830 Fragaria vesca HOM05D004229 ORTHO05D005468 1.8e-262 909.1 595 77.6
RcHm_v2.0_Chr1g0362641 Rosa chinensis HOM05D004229 ORTHO05D005468 2.3e-262 908.7 595 77.5
Sed0026489 Sechium edule HOM05D004229 ORTHO05D005468 8.7e-262 906.7 596 77.3
Eucgr.G02865 Eucalyptus grandis HOM05D004229 ORTHO05D005468 1.5e-261 906.0 596 77.0
Manes.15G095600 Manihot esculenta HOM05D004229 ORTHO05D005468 1.9e-261 905.6 597 77.4
Sc20g0001740 Simmondsia chinensis HOM05D004229 ORTHO05D005468 4.3e-261 904.4 595 76.3
CsaV3_5G036050 Cucumis sativus L. HOM05D004229 ORTHO05D005468 5.6e-261 904.0 596 76.8
MELO3C012405.2 Cucumis melo HOM05D004229 ORTHO05D005468 4.8e-260 901.0 596 76.5
MD01G1103400 Malus domestica HOM05D004229 ORTHO05D005468 2.6e-258 895.2 593 77.6
TWI38G0761 Tripterygium wilfordii HOM05D004229 ORTHO05D005468 4.5e-258 894.4 596 75.2
CAN.G694.36 Capsicum annuum HOM05D004229 ORTHO05D005468 1.9e-256 889.0 605 74.7
Oeu000792.2 Olea europaea HOM05D004229 ORTHO05D005468 2.7e-255 885.2 647 70.2
THA.LOC104826473 Tarenaya hassleriana HOM05D004229 ORTHO05D005468 2.7e-255 885.2 596 75.8
MSTRG.27482 Avicennia marina HOM05D004229 ORTHO05D005468 3.5e-255 884.8 596 74.7
HanXRQChr09g0248221 Helianthus annuus HOM05D004229 ORTHO05D005468 3.5e-255 884.8 594 75.4
Nitab4.5_0001760g0040 Nicotiana tabacum HOM05D004229 ORTHO05D005468 1.1e-253 879.8 586 75.4
HanXRQChr12g0376891 Helianthus annuus HOM05D004229 ORTHO05D005468 1.9e-253 879.0 594 74.9
CiPaw.01G268900 Carya illinoinensis HOM05D004229 ORTHO05D005468 1.3e-252 876.3 596 76.2
Dinv31228 Davidia involucrata HOM05D004229 ORTHO05D005468 3.7e-252 874.8 556 79.0
Haze_16858 Corylus avellana HOM05D004229 ORTHO05D005468 3.1e-251 871.7 604 74.8
Gorai.012G005800 Gossypium raimondii HOM05D004229 ORTHO05D005468 4.0e-251 871.3 584 75.0
PSO339G0163 Papaver somniferum HOM05D004229 ORTHO05D005468 5.3e-251 870.9 594 73.2
Nitab4.5_0000096g0310 Nicotiana tabacum HOM05D004229 ORTHO05D005468 2.0e-250 869.0 614 72.1
PSO801G0085 Papaver somniferum HOM05D004229 ORTHO05D005468 3.4e-250 868.2 595 73.4
EL10Ac7g16698 Beta vulgaris HOM05D004229 ORTHO05D005468 1.4e-248 862.8 618 71.7
Duzib114G0264 Durio zibethinus HOM05D004229 ORTHO05D005468 1.4e-248 862.8 586 74.2
Nn2g13792 Nelumbo nucifera HOM05D004229 ORTHO05D003832 1.4e-248 862.8 595 72.9
CDE09G0908 Ceratophyllum demersum HOM05D004229 ORTHO05D005468 5.5e-248 860.9 596 71.8
C08p30050 Brassica napus HOM05D004229 ORTHO05D005468 7.1e-248 860.5 586 73.4
BolC8t50614H Brassica oleracea HOM05D004229 ORTHO05D005468 7.1e-248 860.5 586 73.4
A09p47800 Brassica napus HOM05D004229 ORTHO05D005468 2.1e-247 859.0 586 72.9
Migut.F01959 Erythranthe guttata HOM05D004229 ORTHO05D005468 7.9e-247 857.1 595 72.8
Carub.0005s2147 Capsella rubella HOM05D004229 ORTHO05D005468 3.0e-246 855.1 596 72.0
AL5G35970 Arabidopsis lyrata HOM05D004229 ORTHO05D005468 6.7e-246 854.0 596 72.3
BcaB01g00152 Brassica carinata HOM05D004229 ORTHO05D005468 1.5e-245 852.8 596 72.0
BcaC07g39772 Brassica carinata HOM05D004229 ORTHO05D005468 1.9e-245 852.4 596 72.1
COL.COLO4_17138 Corchorus olitorius HOM05D004229 ORTHO05D005468 1.3e-244 849.7 586 73.4
Thhalv10010229m.g Eutrema salsugineum HOM05D004229 ORTHO05D005468 1.6e-244 849.4 596 72.0
Sp5g07560 Schrenkiella parvula HOM05D004229 ORTHO05D005468 1.6e-244 849.4 596 72.0
Aqoxy4G03296 Aquilegia oxysepala HOM05D004229 ORTHO05D005468 2.1e-244 849.0 599 71.5
BraA09t40237Z Brassica rapa HOM05D004229 ORTHO05D005468 4.8e-244 847.8 606 70.5
PGSC0003DMG400023478 Solanum tuberosum HOM05D004229 ORTHO05D005468 1.4e-243 846.3 572 75.9
Ciclev10031072m.g Citrus clementina HOM05D004229 ORTHO05D005468 1.2e-242 843.2 597 73.7
AT3G54860 Arabidopsis thaliana HOM05D004229 ORTHO05D005468 2.0e-242 842.4 596 71.0
Aa31sc141G10 Aethionema arabicum HOM05D004229 ORTHO05D005468 2.6e-242 842.0 596 71.3
Atru.chr12.837 Acer truncatum HOM05D004229 ORTHO05D005468 6.5e-241 837.4 568 75.7
FAN10G1099 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.5e-240 835.5 581 75.0
BcaNung06953 Brassica carinata HOM05D004229 ORTHO05D005468 1.6e-239 832.8 597 70.9
CARHR164840 Cardamine hirsuta HOM05D004229 ORTHO05D005468 1.3e-238 829.7 599 70.5
Peaxi162Scf00176g01415 Petunia axillaris HOM05D004229 ORTHO05D005468 1.8e-238 829.3 620 69.0
Hund24846 Selenicereus undatus HOM05D004229 ORTHO05D005468 5.1e-238 827.8 564 74.5
Sabra10G0174900 Salix brachista HOM05D004229 ORTHO05D005468 6.5e-233 810.8 547 75.5
Sabra08G0023800 Salix brachista HOM05D004229 ORTHO05D005468 1.1e-232 810.1 534 77.0
ATR1132G004 Amborella trichopoda HOM05D004229 ORTHO05D005468 2.1e-231 805.8 594 69.7
Lj2C19G5 Lonicera japonica HOM05D004229 ORTHO05D005468 1.5e-229 799.7 623 68.1
SGA_v2.0_scaffold62G21390 Striga asiatica HOM05D004229 ORTHO05D005468 1.3e-228 796.6 586 68.9
Potri.010G226600 Populus trichocarpa HOM05D004229 ORTHO05D005468 1.9e-224 782.7 507 78.5
FAN18G2159 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.1e-223 779.2 595 67.2
Os04g0223000 Oryza sativa ssp. japonica HOM05D004229 ORTHO05D005468 2.0e-221 772.7 589 65.4
SalBow4G2353 Salvia bowleyana HOM05D004229 ORTHO05D005468 7.4e-221 770.8 607 66.1
DCAR_006417 Daucus carota HOM05D004229 ORTHO05D005468 2.8e-220 768.8 586 67.7
Zm00001eb356850 Zea mays HOM05D004229 ORTHO05D005468 2.0e-218 762.7 591 65.0
MD07G1170300 Malus domestica HOM05D004229 ORTHO05D005468 4.5e-218 761.5 636 65.1
Lsat_1_v5_gn_9_70141 Lactuca sativa HOM05D004229 ORTHO05D005468 7.7e-218 760.8 578 69.7
SalBow4G2572 Salvia bowleyana HOM05D004229 ORTHO05D005468 2.6e-213 745.7 594 65.5
ECA232G1554 Erigeron canadensis HOM05D004229 ORTHO05D005468 1.7e-209 733.0 509 73.7
QL08p054435 Quercus lobata HOM05D004229 ORTHO05D005468 3.7e-204 715.3 579 67.2
unitig_899.g14450 Utricularia gibba HOM05D004229 ORTHO05D005468 3.6e-199 698.7 603 62.2
AUR62036467 Chenopodium quinoa HOM05D004229 ORTHO05D005468 1.3e-196 690.3 566 65.5
Mapoly0054s0015 Marchantia polymorpha HOM05D004229 ORTHO05D005468 3.0e-190 669.1 605 57.7
Cfa001676 Carpinus fangiana HOM05D004229 ORTHO05D005468 1.8e-187 659.8 413 80.6
FvH4_5g35750 Fragaria vesca HOM05D004229 ORTHO05D005468 5.0e-185 651.7 595 59.5
Lalb_Chr21g0313711 Lupinus albus HOM05D004229 ORTHO05D005468 4.1e-179 632.1 389 84.1
HPP92_008472 Vanilla planifolia HOM05D004229 ORTHO05D005468 9.2e-179 630.9 573 57.4
Cc02_g10960 Coffea canephora HOM05D004229 ORTHO05D005468 5.6e-176 621.7 409 78.0
Pp3c17_5740 Physcomitrium patens HOM05D004229 ORTHO05D005468 1.2e-175 620.5 609 55.3
SMO358G0561 Selaginella moellendorffii HOM05D004229 ORTHO05D005468 1.7e-172 610.1 593 53.8
TPR.G10283 Trifolium pratense HOM05D004229 ORTHO05D005468 6.2e-151 538.5 313 86.6
SHI08894 Sapria himalayana HOM05D004229 ORTHO05D005468 7.4e-144 515.0 533 54.6
MBI09_g03016_MAGBIO Magnolia biondii HOM05D004229 ORTHO05D005468 2.2e-132 476.9 336 72.9
Peaxi162Scf00176g01310 Petunia axillaris HOM05D004229 ORTHO05D005468 2.5e-128 463.4 378 64.6
AagrBONN_evm.TU.Sc2ySwM_344.2563 Anthoceros agrestis HOM05D004229 ORTHO05D005468 1.2e-125 454.5 426 55.6
SEGI_16046 Sequoiadendron giganteum HOM05D004229 ORTHO05D005468 7.6e-125 451.8 330 68.5
AUR62041380 Chenopodium quinoa HOM05D004229 ORTHO05D005468 6.1e-114 415.6 275 76.4
Carub.0005s2206 Capsella rubella HOM05D004229 ORTHO05D005468 2.6e-112 410.2 314 65.6
Cpa.g.sc1603.2 Carica papaya HOM05D004229 ORTHO05D005468 2.8e-103 380.2 233 80.3
PSO170G6718 Papaver somniferum HOM05D004229 ORTHO05D005468 9.1e-102 375.2 285 66.3
FAN04G2411 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.0e-101 374.0 321 62.6
PRCOL_00000311 Prasinoderma coloniale HOM05D004229 ORTHO05D005468 1.5e-96 357.8 625 36.0
HPP92_008482 Vanilla planifolia HOM05D004229 ORTHO05D005468 2.0e-96 357.5 269 66.9
QL08p054691 Quercus lobata HOM05D004229 ORTHO05D005468 7.5e-96 355.5 242 74.4
FAN13G1026 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.1e-91 341.7 300 61.7
arahy.Tifrunner.gnm1.ann1.I4EZ5E Arachis hypogaea HOM05D004229 ORTHO05D005468 1.4e-89 334.7 174 96.0
Lalb_Chr21g0313701 Lupinus albus HOM05D004229 ORTHO05D005468 6.8e-89 332.4 193 86.5
arahy.Tifrunner.gnm1.ann1.5LR8AY Arachis hypogaea HOM05D004229 ORTHO05D005468 6.3e-87 325.9 289 66.1
AUR62026961 Chenopodium quinoa HOM05D004229 ORTHO05D005468 7.2e-83 312.4 261 65.1
Cre12.g515550 Chlamydomonas reinhardtii HOM05D004229 ORTHO05D005468 9.5e-83 312.0 718 32.0
RcHm_v2.0_Chr7g0237381 Rosa chinensis HOM05D004229 ORTHO05D005468 4.7e-82 309.7 276 57.2
FAN01G0054 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.4e-78 298.1 211 71.1
AUR62041377 Chenopodium quinoa HOM05D004229 ORTHO05D005468 1.7e-76 291.2 203 70.4
FAN13G0469 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.6e-74 284.6 286 54.2
Cc02_g10970 Coffea canephora HOM05D004229 ORTHO05D005468 2.0e-69 267.7 167 78.4
CBR_g52604 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-61 241.1 234 52.6
arahy.Tifrunner.gnm1.ann1.ED1Y34 Arachis hypogaea HOM05D004229 ORTHO05D005468 1.7e-60 238.0 118 98.3
Cpa.g.sc912.1 Carica papaya HOM05D004229 ORTHO05D005468 1.1e-59 235.3 148 80.4
MCO07G397 Micromonas commoda HOM05D004229 ORTHO05D005468 4.0e-57 226.9 726 26.4
CBR_g31454 Chara braunii HOM05D004229 ORTHO05D005468 3.5e-53 213.8 204 55.4
FAN04G2028 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.2e-50 205.3 159 65.4
QL08p054473 Quercus lobata HOM05D004229 ORTHO05D005468 6.2e-50 203.0 133 74.4
RcHm_v2.0_Chr7g0237401 Rosa chinensis HOM05D004229 ORTHO05D005468 2.7e-45 187.6 121 74.4
SEGI_10422 Sequoiadendron giganteum HOM05D004229 ORTHO05D005468 1.7e-44 184.9 131 69.5
RcHm_v2.0_Chr6g0252451 Rosa chinensis HOM05D004229 ORTHO05D005468 8.7e-44 182.6 125 69.6
QL08p054558 Quercus lobata HOM05D004229 ORTHO05D005468 4.0e-41 173.7 151 65.6
Cfa022006 Carpinus fangiana HOM05D004229 ORTHO05D005468 3.2e-30 137.5 493 26.0
SHI08895 Sapria himalayana HOM05D004229 ORTHO05D005468 2.1e-29 134.8 107 63.6
Carub.0005s2207 Capsella rubella HOM05D004229 ORTHO05D005468 4.0e-25 120.6 84 73.8
CBR_g52606 Chara braunii HOM05D004229 ORTHO05D005468 9.9e-24 115.9 115 58.3
MBI09_g03431_MAGBIO Magnolia biondii HOM05D004229 ORTHO05D005468 1.2e-16 92.4 58 74.1
Solyc05g024120.3 Solanum lycopersicum HOM05D004229 ORTHO05D005468 3.8e-15 87.4 115 47.0
MELO3C030131.2 Cucumis melo HOM05D004229 ORTHO05D025211 9.3e-14 82.8 91 56.0
MELO3C027676.2 Cucumis melo HOM05D004229 ORTHO05D025211 2.1e-13 81.6 78 53.8
Sopen05g018750 Solanum pennellii HOM05D000004 ORTHO05D000002 1.5e-11 75.5 86 52.3
Sopen05g018790 Solanum pennellii HOM05D004229 ORTHO05D005468 1.3e-10 72.4 115 40.9
MELO3C029984.2 Cucumis melo HOM05D004229 ORTHO05D025211 4.8e-10 70.5 53 69.8
SEGI_01819 Sequoiadendron giganteum HOM05D004229 ORTHO05D025211 8.2e-10 69.7 49 69.4
Solyc05g024110.1 Solanum lycopersicum HOM05D004229 ORTHO05D005468 4.5e-08 63.9 41 65.9
Solyc11g030770.1 Solanum lycopersicum HOM05D004229 ORTHO05D005468 7.7e-08 63.2 41 70.7
AUR62041379 Chenopodium quinoa HOM05D004229 ORTHO05D000001 3.8e-07 60.8 152 34.9
RcHm_v2.0_Chr7g0237391 Rosa chinensis HOM05D004229 ORTHO05D005468 5.0e-07 60.5 42 66.7
SGA_v2.0_scaffold20G09184 Striga asiatica HOM05D042722 ORTHO05D051393 8.5e-07 59.7 49 61.2
MELO3C035290.2 Cucumis melo HOM05D004229 ORTHO05D025211 3.2e-06 57.8 73 47.9
Solyc01g013980.1 Solanum lycopersicum HOM05D004229 ORTHO05D005468 5.5e-06 57.0 40 67.5


User provided reference genes

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