Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1DQJ64 Arachis hypogaea HOM05D006705 ORTHO05D008179 3.3e-154 549.7 289 100.0
arahy.Tifrunner.gnm1.ann1.A2XG10 Arachis hypogaea HOM05D006705 ORTHO05D008179 3.0e-147 526.6 289 96.5
Medtr3g115270 Medicago truncatula HOM05D006705 ORTHO05D008179 4.4e-119 433.0 292 79.5
Ca_15434_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 9.9e-119 431.8 294 81.0
Ca_15459_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 9.9e-119 431.8 294 81.0
Psat5g159080 Pisum sativum HOM05D006705 ORTHO05D008179 6.9e-112 409.1 298 77.9
TPR.G38137 Trifolium pratense HOM05D006705 ORTHO05D008179 5.8e-111 406.0 299 73.9
Glyma.06G018300 Glycine max HOM05D006705 ORTHO05D008179 4.9e-110 402.9 298 75.2
Lj1g0004605 Lotus japonicus HOM05D006705 ORTHO05D008179 1.1e-109 401.7 298 75.2
Phvul.009G010700 Phaseolus vulgaris HOM05D006705 ORTHO05D008179 1.1e-109 401.7 293 73.4
Glyma.04G018000 Glycine max HOM05D006705 ORTHO05D008179 1.4e-109 401.4 294 74.8
Lalb_Chr11g0061641 Lupinus albus HOM05D006705 ORTHO05D008179 1.2e-108 398.3 289 72.0
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 2.1e-108 397.5 292 72.9
Haze_22772 Corylus avellana HOM05D006705 ORTHO05D008179 1.0e-99 368.6 307 67.1
ClCG08G009460 Citrullus lanatus HOM05D006705 ORTHO05D008179 5.1e-99 366.3 322 64.6
Cfa014075 Carpinus fangiana HOM05D006705 ORTHO05D008179 8.7e-99 365.5 305 66.9
Cpa.g.sc26.199 Carica papaya HOM05D006705 ORTHO05D008179 7.4e-98 362.5 255 73.7
Manes.05G134500 Manihot esculenta HOM05D006705 ORTHO05D008179 7.4e-98 362.5 307 66.4
MELO3C026541.2 Cucumis melo HOM05D006705 ORTHO05D008179 9.6e-98 362.1 322 64.3
Dinv05535 Davidia involucrata HOM05D006705 ORTHO05D008179 3.7e-97 360.1 290 66.9
QL02p014030 Quercus lobata HOM05D006705 ORTHO05D008179 3.7e-97 360.1 231 80.1
CsaV3_6G031600 Cucumis sativus L. HOM05D006705 ORTHO05D008179 6.2e-97 359.4 321 63.9
Actinidia15490 Actinidia chinensis HOM05D006705 ORTHO05D008179 1.4e-96 358.2 300 65.3
Sed0011006 Sechium edule HOM05D006705 ORTHO05D008179 5.3e-96 356.3 294 66.7
GSVIVG01013362001 Vitis vinifera HOM05D006705 ORTHO05D008179 6.9e-96 355.9 301 66.8
Thecc.08G058800 Theobroma cacao HOM05D006705 ORTHO05D008179 2.6e-95 354.0 241 77.2
CiPaw.08G072900 Carya illinoinensis HOM05D006705 ORTHO05D008179 4.5e-95 353.2 296 66.2
Gohir.D01G092000 Gossypium hirsutum HOM05D006705 ORTHO05D008179 5.8e-95 352.8 305 65.6
Gorai.002G117100 Gossypium raimondii HOM05D006705 ORTHO05D008179 1.7e-94 351.3 305 65.6
COL.COLO4_06661 Corchorus olitorius HOM05D006705 ORTHO05D008179 2.9e-94 350.5 244 76.2
CANSAT25G1831 Cannabis sativa HOM05D006705 ORTHO05D008179 1.1e-93 348.6 256 71.1
Gohir.A01G105700 Gossypium hirsutum HOM05D006705 ORTHO05D008179 4.2e-93 346.7 239 76.6
Ciclev10000451m.g Citrus clementina HOM05D006705 ORTHO05D008179 1.2e-92 345.1 313 61.3
FAN27G0286 Fragaria x ananassa HOM05D006705 ORTHO05D008179 6.1e-92 342.8 299 62.2
Nitab4.5_0025577g0010 Nicotiana tabacum HOM05D006705 ORTHO05D008179 1.0e-91 342.0 234 72.6
RcHm_v2.0_Chr6g0304261 Rosa chinensis HOM05D006705 ORTHO05D008179 1.0e-91 342.0 298 66.1
FAN15G2229 Fragaria x ananassa HOM05D006705 ORTHO05D008179 1.3e-91 341.7 300 63.0
Nitab4.5_0000337g0230 Nicotiana tabacum HOM05D006705 ORTHO05D008179 1.3e-91 341.7 238 71.0
Potri.005G250200 Populus trichocarpa HOM05D006705 ORTHO05D008179 3.0e-91 340.5 240 72.9
Prupe.1G354600 Prunus persica HOM05D006705 ORTHO05D008179 3.0e-91 340.5 226 78.8
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 1.1e-90 338.6 240 71.7
FvH4_2g37460 Fragaria vesca HOM05D006705 ORTHO05D008179 1.1e-90 338.6 299 61.9
Nn5g30939 Nelumbo nucifera HOM05D006705 ORTHO05D008179 1.1e-90 338.6 289 64.4
CSS0004504 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 1.9e-90 337.8 295 65.8
CSS0019684 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 1.9e-90 337.8 295 65.8
TAR376G0550 Trochodendron aralioides HOM05D006705 ORTHO05D008179 3.3e-90 337.0 240 72.1
Hma1.2p1_0507F.1_g168450 Hydrangea macrophylla HOM05D006705 ORTHO05D008179 1.3e-89 335.1 238 73.1
Sabra05G0193800 Salix brachista HOM05D006705 ORTHO05D008179 2.2e-89 334.3 306 60.8
CAN.G985.2 Capsicum annuum HOM05D006705 ORTHO05D008179 3.7e-89 333.6 240 70.8
THA.LOC104825423 Tarenaya hassleriana HOM05D006705 ORTHO05D008179 3.7e-89 333.6 282 62.4
Aa31LG9G12430 Aethionema arabicum HOM05D006705 ORTHO05D008179 8.2e-89 332.4 244 68.9
Thhalv10027665m.g Eutrema salsugineum HOM05D006705 ORTHO05D008179 8.2e-89 332.4 231 72.3
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 8.2e-89 332.4 299 61.2
CARHR284920 Cardamine hirsuta HOM05D006705 ORTHO05D008179 2.4e-88 330.9 239 71.5
Sp7g08260 Schrenkiella parvula HOM05D006705 ORTHO05D008179 3.1e-88 330.5 230 71.3
vmacro21812 Vaccinium macrocarpon HOM05D006705 ORTHO05D008179 3.1e-88 330.5 300 59.3
Potri.002G010900 Populus trichocarpa HOM05D006705 ORTHO05D008179 5.3e-88 329.7 314 59.2
PGSC0003DMG400011663 Solanum tuberosum HOM05D006705 ORTHO05D008179 6.9e-88 329.3 225 74.7
AL8G19290 Arabidopsis lyrata HOM05D006705 ORTHO05D008179 1.5e-87 328.2 235 70.6
BcaC06g31759 Brassica carinata HOM05D006705 ORTHO05D008179 2.6e-87 327.4 230 71.3
MSTRG.1107 Avicennia marina HOM05D006705 ORTHO05D008179 5.9e-87 326.2 289 60.6
Oeu007482.1 Olea europaea HOM05D006705 ORTHO05D008179 1.0e-86 325.5 238 69.7
Solyc08g045850.3 Solanum lycopersicum HOM05D006705 ORTHO05D008179 1.3e-86 325.1 231 72.3
DCAR_013913 Daucus carota HOM05D006705 ORTHO05D008179 1.7e-86 324.7 290 62.4
MD12G1003200 Malus domestica HOM05D006705 ORTHO05D008179 1.7e-86 324.7 245 70.2
Sopen08g014170 Solanum pennellii HOM05D006705 ORTHO05D008179 1.7e-86 324.7 231 72.3
Carub.0008s0687 Capsella rubella HOM05D006705 ORTHO05D008179 2.9e-86 323.9 233 69.5
AT5G42310 Arabidopsis thaliana HOM05D006705 ORTHO05D008179 6.5e-86 322.8 246 67.1
PSO170G2138 Papaver somniferum HOM05D006705 ORTHO05D008179 8.5e-86 322.4 239 68.6
BcaC02g10761 Brassica carinata HOM05D006705 ORTHO05D008179 1.9e-85 321.2 243 66.3
C04p25410 Brassica napus HOM05D006705 ORTHO05D008179 1.9e-85 321.2 243 66.3
BolC4t24049H Brassica oleracea HOM05D006705 ORTHO05D008179 1.9e-85 321.2 243 66.3
A03p65890 Brassica napus HOM05D006705 ORTHO05D008179 2.5e-85 320.9 243 66.7
BraA03t15643Z Brassica rapa HOM05D006705 ORTHO05D008179 2.5e-85 320.9 243 66.7
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 5.5e-85 319.7 239 67.8
Cc10_g00680 Coffea canephora HOM05D006705 ORTHO05D008179 1.6e-84 318.2 289 60.2
Hund05113 Selenicereus undatus HOM05D006705 ORTHO05D008179 3.6e-84 317.0 304 60.5
Lsat_1_v5_gn_9_45140 Lactuca sativa HOM05D006705 ORTHO05D008179 4.6e-84 316.6 296 57.8
Aqoxy5G01043 Aquilegia oxysepala HOM05D006705 ORTHO05D008179 6.1e-84 316.2 309 57.3
Migut.C00960 Erythranthe guttata HOM05D006705 ORTHO05D008179 6.1e-84 316.2 290 58.3
Sabra02G0008200 Salix brachista HOM05D006705 ORTHO05D008179 1.0e-83 315.5 234 69.2
MD15G1002100 Malus domestica HOM05D006705 ORTHO05D008179 3.0e-83 313.9 229 72.9
AUR62043173 Chenopodium quinoa HOM05D006705 ORTHO05D008179 1.5e-82 311.6 296 57.4
SalBow7G0522 Salvia bowleyana HOM05D006705 ORTHO05D008179 2.0e-82 311.2 289 59.5
EL10Ac1g01967 Beta vulgaris HOM05D006705 ORTHO05D008179 4.3e-82 310.1 291 60.5
AUR62036875 Chenopodium quinoa HOM05D006705 ORTHO05D008179 9.7e-82 308.9 237 67.5
Peaxi162Scf00400g00113 Petunia axillaris HOM05D006705 ORTHO05D008179 1.3e-81 308.5 230 69.1
SGA_v2.0_scaffold108G30860 Striga asiatica HOM05D006705 ORTHO05D008179 2.2e-81 307.8 289 58.8
PGR031G2749 Punica granatum HOM05D006705 ORTHO05D008179 8.2e-81 305.8 309 57.9
HanXRQChr05g0146791 Helianthus annuus HOM05D006705 ORTHO05D008179 2.2e-78 297.7 236 65.7
CDE02G1751 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 7.9e-76 289.3 213 68.1
Lsat_1_v5_gn_8_26180 Lactuca sativa HOM05D006705 ORTHO05D008179 3.9e-75 287.0 291 55.0
CDE04G2934 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 2.6e-74 284.3 288 55.2
Ah.11g041180 Amaranthus hybridus HOM05D006705 ORTHO05D008179 3.3e-74 283.9 232 64.7
HanXRQChr12g0367581 Helianthus annuus HOM05D006705 ORTHO05D008179 2.2e-73 281.2 254 58.7
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 3.7e-73 280.4 267 56.6
Sc15g0004450 Simmondsia chinensis HOM05D006705 ORTHO05D008179 1.2e-71 275.4 291 54.0
ECA233G5787 Erigeron canadensis HOM05D006705 ORTHO05D008179 1.9e-69 268.1 293 51.9
Lj4A11G70 Lonicera japonica HOM05D006705 ORTHO05D008179 5.5e-61 240.0 152 79.6
Eucgr.F03553 Eucalyptus grandis HOM05D006705 ORTHO05D008179 1.2e-60 238.8 169 74.6
MBI08_g41522_MAGBIO Magnolia biondii HOM05D006705 ORTHO05D008179 2.6e-50 204.5 229 53.3
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 2.0e-47 194.9 147 64.6
HPP92_000875 Vanilla planifolia HOM05D006705 ORTHO05D008179 7.2e-45 186.4 245 44.1
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 8.9e-35 152.9 195 42.6
SEGI_04333 Sequoiadendron giganteum HOM05D006705 ORTHO05D000002 8.3e-33 146.4 184 46.2
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 7.1e-24 116.7 231 34.6
Mapoly0048s0090 Marchantia polymorpha HOM05D006705 ORTHO05D008179 1.2e-23 115.9 195 34.9
AagrBONN_evm.TU.Sc2ySwM_362.1316 Anthoceros agrestis HOM05D006705 ORTHO05D008179 1.7e-22 112.1 181 33.7
Os07g0548300 Oryza sativa ssp. japonica HOM05D006705 ORTHO05D008179 1.1e-21 109.4 234 35.0
SMO180G0012 Selaginella moellendorffii HOM05D006705 ORTHO05D008179 2.5e-21 108.2 172 34.9
FvH4_5g30181 Fragaria vesca HOM05D006705 ORTHO05D008179 2.0e-10 72.0 69 55.1
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 4.6e-07 60.8 88 34.1
AUR62038945 Chenopodium quinoa HOM05D002479 ORTHO05D002675 4.6e-07 60.8 88 34.1
EL10Ac9g20676 Beta vulgaris HOM05D002479 ORTHO05D002675 1.3e-06 59.3 98 32.7
Medtr7g078360 Medicago truncatula HOM05D000001 ORTHO05D010340 2.3e-06 58.5 168 27.4
AL1G26370 Arabidopsis lyrata HOM05D000001 ORTHO05D010340 5.1e-06 57.4 141 28.4
Lj2A685T11 Lonicera japonica HOM05D005862 ORTHO05D007731 6.6e-06 57.0 150 27.3


User provided reference genes

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