Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1AJ3D1 Arachis hypogaea HOM05D001008 ORTHO05D009098 3.0e-81 305.1 150 100.0
arahy.Tifrunner.gnm1.ann1.3P38HT Arachis hypogaea HOM05D001008 ORTHO05D009098 2.4e-33 146.0 108 72.2
arahy.Tifrunner.gnm1.ann1.J24SNI Arachis hypogaea HOM05D001008 ORTHO05D009098 6.9e-33 144.4 108 71.3
Glyma.09G025100 Glycine max HOM05D001008 ORTHO05D009098 1.2e-29 133.7 108 64.8
Lalb_Chr20g0120101 Lupinus albus HOM05D001008 ORTHO05D009098 2.1e-29 132.9 109 65.1
VMungo0540G1033 Vigna mungo HOM05D001008 ORTHO05D009098 2.1e-29 132.9 108 64.8
Glyma.15G131200 Glycine max HOM05D001008 ORTHO05D009098 3.5e-29 132.1 108 63.9
Ca_00850_v3 Cicer arietinum L. HOM05D001008 ORTHO05D009098 6.0e-29 131.3 108 63.9
Phvul.006G127500 Phaseolus vulgaris HOM05D001008 ORTHO05D009098 7.9e-29 131.0 108 63.0
Lj6g0017297 Lotus japonicus HOM05D001008 ORTHO05D009098 1.0e-28 130.6 108 63.0
FvH4_3g10220 Fragaria vesca HOM05D001008 ORTHO05D009098 1.8e-28 129.8 109 61.5
TPR.G26338 Trifolium pratense HOM05D001008 ORTHO05D009098 3.0e-28 129.0 108 62.0
FAN25G1843 Fragaria x ananassa HOM05D002312 ORTHO05D001614 5.1e-28 128.3 114 57.9
FAN21G3707 Fragaria x ananassa HOM05D002312 ORTHO05D001614 8.7e-28 127.5 114 57.9
RcHm_v2.0_Chr5g0016441 Rosa chinensis HOM05D001008 ORTHO05D009098 1.9e-27 126.3 108 60.2
Atru.chr10.805 Acer truncatum HOM05D001008 ORTHO05D009098 2.5e-27 125.9 108 61.1
Dinv16828 Davidia involucrata HOM05D001008 ORTHO05D009098 2.5e-27 125.9 108 61.1
TAR627G0015 Trochodendron aralioides HOM05D001008 ORTHO05D009098 4.3e-27 125.2 119 56.3
EL10Ac8g19545 Beta vulgaris HOM05D001008 ORTHO05D009098 5.6e-27 124.8 108 60.2
Duzib235G1260 Durio zibethinus HOM05D001008 ORTHO05D009098 7.4e-27 124.4 119 56.3
Medtr2g030400 Medicago truncatula HOM05D001008 ORTHO05D009098 7.4e-27 124.4 108 61.1
Cc09_g07820 Coffea canephora HOM05D001008 ORTHO05D009098 9.6e-27 124.0 108 60.2
Nitab4.5_0000076g0220 Nicotiana tabacum HOM05D001008 ORTHO05D009098 1.3e-26 123.6 111 58.6
Sabra16G0316000 Salix brachista HOM05D001008 ORTHO05D009098 1.3e-26 123.6 119 54.6
AUR62030139 Chenopodium quinoa HOM05D001008 ORTHO05D009098 2.1e-26 122.9 108 58.3
Gohir.D02G105500 Gossypium hirsutum HOM05D001008 ORTHO05D009098 2.1e-26 122.9 108 60.2
Gorai.005G119700 Gossypium raimondii HOM05D001008 ORTHO05D009098 2.1e-26 122.9 108 60.2
AUR62002682 Chenopodium quinoa HOM05D001008 ORTHO05D009098 2.8e-26 122.5 108 58.3
Hma1.2p1_0067F.1_g036870 Hydrangea macrophylla HOM05D001008 ORTHO05D009098 2.8e-26 122.5 108 59.3
GSVIVG01021668001 Vitis vinifera HOM05D001008 ORTHO05D009098 2.8e-26 122.5 108 61.1
CiPaw.09G142300 Carya illinoinensis HOM05D001008 ORTHO05D009098 3.7e-26 122.1 109 57.8
Eucgr.D00129 Eucalyptus grandis HOM05D001008 ORTHO05D009098 4.8e-26 121.7 108 57.4
Sopen02g006560 Solanum pennellii HOM05D001008 ORTHO05D009098 6.2e-26 121.3 108 59.3
Lj2A329T54 Lonicera japonica HOM05D001008 ORTHO05D009098 1.1e-25 120.6 108 58.3
PSO541G4496 Papaver somniferum HOM05D001008 ORTHO05D009098 1.1e-25 120.6 119 53.8
COL.COLO4_26854 Corchorus olitorius HOM05D001008 ORTHO05D009098 1.4e-25 120.2 108 60.2
Potri.001G465600 Populus trichocarpa HOM05D001008 ORTHO05D009098 1.4e-25 120.2 108 58.3
Solyc02g022930.3 Solanum lycopersicum HOM05D001008 ORTHO05D009098 1.4e-25 120.2 108 58.3
HPP92_028174 Vanilla planifolia HOM05D001008 ORTHO05D009098 1.4e-25 120.2 95 62.1
ClCG03G006140 Citrullus lanatus HOM05D001008 ORTHO05D009098 2.4e-25 119.4 108 57.4
MBI18_g28228_MAGBIO Magnolia biondii HOM05D001008 ORTHO05D009098 3.1e-25 119.0 119 52.9
PSO675G1263 Papaver somniferum HOM05D001008 ORTHO05D009098 3.1e-25 119.0 119 52.9
CARHR227490 Cardamine hirsuta HOM05D001008 ORTHO05D009098 4.0e-25 118.6 108 56.5
Zm00001eb224720 Zea mays HOM05D001008 ORTHO05D009098 5.3e-25 118.2 108 56.5
CAN.G23.10 Capsicum annuum HOM05D001008 ORTHO05D009098 6.9e-25 117.9 108 58.3
MELO3C002813.2 Cucumis melo HOM05D001008 ORTHO05D009098 6.9e-25 117.9 117 53.8
Cpa.g.sc166.37 Carica papaya HOM05D001008 ORTHO05D009098 9.0e-25 117.5 108 57.4
THA.LOC104806251 Tarenaya hassleriana HOM05D001008 ORTHO05D009098 9.0e-25 117.5 108 55.6
unitig_32.g11680 Utricularia gibba HOM05D001008 ORTHO05D009098 9.0e-25 117.5 109 56.9
Actinidia33687 Actinidia chinensis HOM05D001008 ORTHO05D009098 1.2e-24 117.1 108 57.4
CsaV3_1G037300 Cucumis sativus L. HOM05D001008 ORTHO05D009098 1.2e-24 117.1 116 55.2
ATR1098G042 Amborella trichopoda HOM05D001008 ORTHO05D009098 1.5e-24 116.7 124 50.8
BcaC01g00729 Brassica carinata HOM05D001008 ORTHO05D009098 1.5e-24 116.7 108 55.6
Ciclev10015754m.g Citrus clementina HOM05D001008 ORTHO05D009098 1.5e-24 116.7 108 57.4
Nn3g20168 Nelumbo nucifera HOM05D001008 ORTHO05D009098 1.5e-24 116.7 119 52.9
AT4G20930 Arabidopsis thaliana HOM05D001008 ORTHO05D009098 2.0e-24 116.3 108 54.6
vmacro03375 Vaccinium macrocarpon HOM05D001008 ORTHO05D009098 2.0e-24 116.3 117 53.8
Aqoxy1G01588 Aquilegia oxysepala HOM05D001008 ORTHO05D009098 2.6e-24 115.9 119 54.6
AL7G33220 Arabidopsis lyrata HOM05D001008 ORTHO05D009098 2.6e-24 115.9 108 54.6
Migut.M01903 Erythranthe guttata HOM05D001008 ORTHO05D009098 2.6e-24 115.9 108 56.5
Thhalv10025955m.g Eutrema salsugineum HOM05D001008 ORTHO05D009098 2.6e-24 115.9 108 54.6
Peaxi162Scf00395g00411 Petunia axillaris HOM05D001008 ORTHO05D009098 2.6e-24 115.9 108 56.5
Sc17g0004600 Simmondsia chinensis HOM05D001008 ORTHO05D009098 3.4e-24 115.5 108 55.6
Sed0010622 Sechium edule HOM05D001008 ORTHO05D009098 4.5e-24 115.2 108 55.6
SalBow8G1627 Salvia bowleyana HOM05D001008 ORTHO05D009098 5.8e-24 114.8 108 55.6
Sp7g19010 Schrenkiella parvula HOM05D001008 ORTHO05D009098 5.8e-24 114.8 108 54.6
Eucgr.D00258 Eucalyptus grandis HOM05D001008 ORTHO05D009098 7.6e-24 114.4 97 60.8
Aa31LG6G3000 Aethionema arabicum HOM05D001008 ORTHO05D009098 1.0e-23 114.0 108 54.6
A08p15410 Brassica napus HOM05D001008 ORTHO05D009098 1.0e-23 114.0 108 53.7
BraA08t33519Z Brassica rapa HOM05D001008 ORTHO05D009098 1.0e-23 114.0 108 53.7
Haze_05846 Corylus avellana HOM05D001008 ORTHO05D009098 1.0e-23 114.0 108 56.5
Carub.0007s2050 Capsella rubella HOM05D001008 ORTHO05D009098 1.3e-23 113.6 108 52.8
ECA248G1201 Erigeron canadensis HOM05D001008 ORTHO05D009098 1.3e-23 113.6 108 55.6
MSTRG.16297 Avicennia marina HOM05D001008 ORTHO05D009098 2.2e-23 112.8 108 53.7
MD05G1271700 Malus domestica HOM05D001008 ORTHO05D009098 2.9e-23 112.5 108 54.6
DCAR_007835 Daucus carota HOM05D001008 ORTHO05D009098 3.8e-23 112.1 108 55.6
Manes.14G124021 Manihot esculenta HOM05D001008 ORTHO05D009098 3.8e-23 112.1 108 53.7
BcaC01g00736 Brassica carinata HOM05D001008 ORTHO05D009098 4.9e-23 111.7 108 53.7
PGR083G1201 Punica granatum HOM05D000251 ORTHO05D000414 4.9e-23 111.7 108 54.6
BcaB03g11709 Brassica carinata HOM05D001008 ORTHO05D009098 6.5e-23 111.3 104 54.8
C03p83680 Brassica napus HOM05D001008 ORTHO05D009098 6.5e-23 111.3 108 52.8
BolC3t20647H Brassica oleracea HOM05D001008 ORTHO05D009098 6.5e-23 111.3 108 52.8
HanXRQChr09g0259921 Helianthus annuus HOM05D001008 ORTHO05D009098 2.5e-22 109.4 108 55.6
Lsat_1_v5_gn_5_159560 Lactuca sativa HOM05D001008 ORTHO05D009098 3.2e-22 109.0 108 54.6
CDE02G1783 Ceratophyllum demersum HOM05D001008 ORTHO05D009098 2.7e-21 105.9 109 52.3
Pp3c3_17080 Physcomitrium patens HOM05D001008 ORTHO05D009098 7.9e-21 104.4 168 38.7
AagrBONN_evm.TU.Sc2ySwM_344.3223 Anthoceros agrestis HOM05D001008 ORTHO05D009098 5.1e-20 101.7 119 47.1
Thecc.06G004300 Theobroma cacao HOM05D001008 ORTHO05D009098 3.3e-19 99.0 53 84.9
FAN16G1118 Fragaria x ananassa HOM05D002312 ORTHO05D001614 1.3e-18 97.1 53 83.0
CSS0020227 Camellia sinensis var. sinensis HOM05D001008 ORTHO05D009098 1.6e-18 96.7 53 83.0
CSS0050006 Camellia sinensis var. sinensis HOM05D001008 ORTHO05D009098 1.6e-18 96.7 53 83.0
FAN11G2615 Fragaria x ananassa HOM05D002312 ORTHO05D001614 2.2e-18 96.3 53 81.1
QL05p062602 Quercus lobata HOM05D001008 ORTHO05D009098 2.8e-18 95.9 53 81.1
Hund17657 Selenicereus undatus HOM05D001008 ORTHO05D009098 6.3e-18 94.7 91 53.8
Prupe.4G091300 Prunus persica HOM05D001008 ORTHO05D009098 2.4e-17 92.8 56 75.0
Hma1.2p1_0067F.1_g036880 Hydrangea macrophylla HOM05D001008 ORTHO05D009098 6.9e-17 91.3 53 75.5
Mapoly0028s0140 Marchantia polymorpha HOM05D001008 ORTHO05D009098 1.2e-16 90.5 113 44.2
MBI18_g37149_MAGBIO Magnolia biondii HOM05D001008 ORTHO05D009098 2.6e-16 89.4 95 48.4
HPP92_026301 Vanilla planifolia HOM05D001008 ORTHO05D009098 4.5e-16 88.6 92 50.0
SGA_v2.0_scaffold1G00273 Striga asiatica HOM05D000033 ORTHO05D001614 1.2e-13 80.5 108 46.3
Nitab4.5_0004204g0040 Nicotiana tabacum HOM05D001008 ORTHO05D009098 1.6e-13 80.1 108 46.3
Gohir.A03G085101 Gossypium hirsutum HOM05D001008 ORTHO05D009098 1.1e-09 67.4 83 47.0
PRCOL_00002051 Prasinoderma coloniale HOM05D001008 ORTHO05D009098 1.8e-09 66.6 113 36.3
Cre14.g630859 Chlamydomonas reinhardtii HOM05D001008 ORTHO05D009098 7.7e-08 61.2 105 33.3
Haze_27311 Corylus avellana HOM05D001008 ORTHO05D009098 6.5e-07 58.2 108 32.4
Haze_26700 Corylus avellana HOM05D001008 ORTHO05D009098 1.1e-06 57.4 118 30.5
arahy.Tifrunner.gnm1.ann1.W76PKR Arachis hypogaea HOM05D001008 ORTHO05D000594 1.4e-06 57.0 28 92.9
arahy.Tifrunner.gnm1.ann1.RFGU8W Arachis hypogaea HOM05D000055 ORTHO05D001675 3.2e-06 55.8 28 85.7
arahy.Tifrunner.gnm1.ann1.RNH5YV Arachis hypogaea HOM05D000055 ORTHO05D001675 9.4e-06 54.3 27 81.5


User provided reference genes

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