Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0SF8RD Arachis hypogaea HOM05D003481 ORTHO05D004001 0.0e+00 1288.1 675 100.0
arahy.Tifrunner.gnm1.ann1.D6X22R Arachis hypogaea HOM05D003481 ORTHO05D004001 0.0e+00 1141.3 655 93.6
Glyma.15G192300 Glycine max HOM05D003481 ORTHO05D004001 2.1e-291 1005.4 666 81.2
Lj6g0004300 Lotus japonicus HOM05D003481 ORTHO05D004001 8.1e-291 1003.4 659 81.0
Glyma.09G083800 Glycine max HOM05D003481 ORTHO05D004001 5.2e-290 1000.7 666 80.9
Phvul.009G217900 Phaseolus vulgaris HOM05D003481 ORTHO05D004001 1.1e-287 993.0 666 80.0
Ca_02512_v3 Cicer arietinum L. HOM05D003481 ORTHO05D004001 4.2e-287 991.1 663 81.3
TPR.G22668 Trifolium pratense HOM05D003481 ORTHO05D004001 2.3e-285 985.3 663 80.2
Lalb_Chr08g0233181 Lupinus albus HOM05D003481 ORTHO05D004001 1.2e-281 973.0 661 79.4
Medtr2g047908 Medicago truncatula HOM05D003481 ORTHO05D004001 1.0e-277 959.9 663 78.9
Cfa000748 Carpinus fangiana HOM05D003481 ORTHO05D004001 3.9e-253 878.2 665 71.7
MD04G1237800 Malus domestica HOM05D003481 ORTHO05D004001 3.2e-247 858.6 654 70.9
Prupe.6G356900 Prunus persica HOM05D003481 ORTHO05D004001 7.2e-247 857.4 664 70.8
Psat0s4071g0040 Pisum sativum HOM05D003481 ORTHO05D004001 1.6e-246 856.3 590 79.7
CiPaw.09G149800 Carya illinoinensis HOM05D003481 ORTHO05D004001 1.4e-245 853.2 665 69.8
RcHm_v2.0_Chr3g0448451 Rosa chinensis HOM05D003481 ORTHO05D004001 2.3e-245 852.4 657 71.5
Dinv03119 Davidia involucrata HOM05D003481 ORTHO05D004001 6.7e-245 850.9 667 70.2
Ciclev10014122m.g Citrus clementina HOM05D003481 ORTHO05D004001 3.3e-244 848.6 664 70.5
Thecc.06G002800 Theobroma cacao HOM05D003481 ORTHO05D004001 1.7e-243 846.3 661 71.0
GSVIVG01037972001 Vitis vinifera HOM05D003481 ORTHO05D004001 1.7e-243 846.3 656 70.9
CsaV3_6G052920 Cucumis sativus L. HOM05D003481 ORTHO05D004001 3.7e-243 845.1 657 71.5
Lj1A1155G48 Lonicera japonica HOM05D003481 ORTHO05D004001 6.3e-243 844.3 658 71.6
FvH4_6g01010 Fragaria vesca HOM05D003481 ORTHO05D004001 4.1e-242 841.6 662 69.0
Atru.chr8.321 Acer truncatum HOM05D003481 ORTHO05D004001 9.1e-242 840.5 663 70.6
MD12G1256000 Malus domestica HOM05D003481 ORTHO05D004001 3.8e-240 835.1 661 68.7
ClCG01G025690 Citrullus lanatus HOM05D003481 ORTHO05D004001 1.9e-239 832.8 663 70.0
Hma1.2p1_0410F.1_g147020 Hydrangea macrophylla HOM05D003481 ORTHO05D004001 5.5e-239 831.2 659 70.1
Sc13g0010770 Simmondsia chinensis HOM05D003481 ORTHO05D004001 2.3e-237 825.9 667 67.5
QL05p065371 Quercus lobata HOM05D003481 ORTHO05D004001 1.5e-236 823.2 653 69.5
TAR626G0933 Trochodendron aralioides HOM05D003481 ORTHO05D004001 1.5e-236 823.2 664 68.1
Sed0000926 Sechium edule HOM05D003481 ORTHO05D004001 1.7e-235 819.7 663 69.4
Gohir.D10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 4.8e-235 818.1 656 69.5
Gorai.011G004800 Gossypium raimondii HOM05D003481 ORTHO05D004001 8.2e-235 817.4 656 69.5
FAN02G3168 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.1e-234 817.0 662 67.8
Gohir.A10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 1.1e-234 817.0 655 69.2
AUR62028144 Chenopodium quinoa HOM05D003481 ORTHO05D004001 3.1e-234 815.5 664 66.7
THA.LOC104812894 Tarenaya hassleriana HOM05D003481 ORTHO05D004001 4.1e-234 815.1 660 66.8
Sed0003597 Sechium edule HOM05D003481 ORTHO05D004001 5.3e-234 814.7 663 68.2
QL08p057617 Quercus lobata HOM05D003481 ORTHO05D004001 9.1e-234 813.9 672 67.7
TWI38G1754 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 1.6e-233 813.1 670 67.3
TAR624G0033 Trochodendron aralioides HOM05D003481 ORTHO05D004001 1.6e-233 813.1 669 68.5
CSS0014471 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 2.0e-233 812.8 656 67.7
Duzib235G1444 Durio zibethinus HOM05D003481 ORTHO05D004001 2.6e-233 812.4 661 68.1
Nn4g25046 Nelumbo nucifera HOM05D003481 ORTHO05D004001 5.0e-232 808.1 663 66.5
COL.COLO4_26841 Corchorus olitorius HOM05D003481 ORTHO05D004001 1.9e-231 806.2 660 68.2
AUR62005919 Chenopodium quinoa HOM05D003481 ORTHO05D004001 7.2e-231 804.3 688 65.1
Rhsim13G0126800 Rhododendron simsii HOM05D003481 ORTHO05D004001 2.1e-230 802.7 659 67.2
TWI15G0246 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 1.8e-229 799.7 666 67.3
Potri.011G154000 Populus trichocarpa HOM05D003481 ORTHO05D004001 2.0e-228 796.2 667 67.8
FAN14G4292 Fragaria x ananassa HOM05D003481 ORTHO05D004001 4.4e-228 795.0 659 67.4
Eucgr.K01948 Eucalyptus grandis HOM05D003481 ORTHO05D004001 7.5e-228 794.3 662 65.7
FAN05G1738 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.4e-226 790.0 654 67.6
Actinidia02453 Actinidia chinensis HOM05D003481 ORTHO05D004001 9.1e-226 787.3 653 66.5
EL10Ac3g05104 Beta vulgaris HOM05D003481 ORTHO05D004001 9.1e-226 787.3 717 62.2
Potri.001G442900 Populus trichocarpa HOM05D003481 ORTHO05D004001 1.6e-225 786.6 667 66.4
MELO3C007016.2 Cucumis melo HOM05D003481 ORTHO05D004001 1.3e-224 783.5 735 63.0
Sopen02g018780 Solanum pennellii HOM05D003481 ORTHO05D004001 2.9e-224 782.3 657 65.0
CAN.G954.8 Capsicum annuum HOM05D003481 ORTHO05D004001 1.9e-223 779.6 658 64.6
CAN.G306.7 Capsicum annuum HOM05D003481 ORTHO05D004001 1.6e-222 776.5 663 65.0
ECA236G0663 Erigeron canadensis HOM05D003481 ORTHO05D004001 1.4e-221 773.5 654 65.3
Solyc02g030110.2 Solanum lycopersicum HOM05D003481 ORTHO05D004001 1.4e-221 773.5 658 65.2
Hund09767 Selenicereus undatus HOM05D003481 ORTHO05D004001 1.8e-221 773.1 636 67.3
Sopen02g009430 Solanum pennellii HOM05D003481 ORTHO05D004001 3.0e-221 772.3 658 65.0
Nitab4.5_0002444g0030 Nicotiana tabacum HOM05D003481 ORTHO05D004001 4.1e-218 761.9 654 64.8
DCAR_004311 Daucus carota HOM05D003481 ORTHO05D004001 4.5e-217 758.4 664 63.1
Lsat_1_v5_gn_7_35621 Lactuca sativa HOM05D003481 ORTHO05D004001 4.5e-217 758.4 654 64.4
vmacro03482 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 5.9e-217 758.1 759 58.4
FAN09G1882 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.0e-216 757.3 638 67.2
Duzib160G0577 Durio zibethinus HOM05D003481 ORTHO05D004001 1.1e-215 753.8 655 65.2
Sabra11G0145500 Salix brachista HOM05D003481 ORTHO05D004001 1.6e-214 750.0 746 59.8
Peaxi162Scf00267g00817 Petunia axillaris HOM05D003481 ORTHO05D004001 2.6e-212 742.7 680 61.6
HanXRQChr06g0183401 Helianthus annuus HOM05D003481 ORTHO05D004001 4.9e-211 738.4 643 63.9
Nitab4.5_0010415g0040 Nicotiana tabacum HOM05D003481 ORTHO05D004001 8.3e-211 737.6 653 63.6
HanXRQChr04g0119881 Helianthus annuus HOM05D003481 ORTHO05D004001 1.8e-210 736.5 656 62.7
AT4G19490 Arabidopsis thaliana HOM05D003481 ORTHO05D004001 2.7e-209 732.6 656 62.2
AL7G34630 Arabidopsis lyrata HOM05D003481 ORTHO05D004001 1.0e-208 730.7 656 61.6
BcaNung01774 Brassica carinata HOM05D003481 ORTHO05D004001 2.9e-208 729.2 655 62.6
Aa31LG6G2100 Aethionema arabicum HOM05D003481 ORTHO05D004001 6.6e-208 728.0 660 62.3
Thhalv10024300m.g Eutrema salsugineum HOM05D003481 ORTHO05D004001 8.6e-208 727.6 655 61.8
Aqoxy7G02779 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 4.3e-207 725.3 673 60.6
Carub.0007s2172 Capsella rubella HOM05D003481 ORTHO05D004001 5.6e-207 724.9 657 61.5
CARHR226290 Cardamine hirsuta HOM05D003481 ORTHO05D004001 5.6e-207 724.9 654 61.5
PSO170G3331 Papaver somniferum HOM05D003481 ORTHO05D004001 4.7e-206 721.8 661 61.0
A01p11430 Brassica napus HOM05D003481 ORTHO05D004001 1.0e-205 720.7 653 62.2
BolC7t45545H Brassica oleracea HOM05D003481 ORTHO05D004001 1.0e-205 720.7 656 61.6
BraA01t01089Z Brassica rapa HOM05D003481 ORTHO05D004001 1.0e-205 720.7 653 61.9
Sp7g18100 Schrenkiella parvula HOM05D003481 ORTHO05D004001 1.0e-205 720.7 656 61.0
BcaNung02560 Brassica carinata HOM05D003481 ORTHO05D004001 2.3e-205 719.5 661 61.0
C07p50430 Brassica napus HOM05D003481 ORTHO05D004001 2.3e-205 719.5 656 61.4
BcaNung07226 Brassica carinata HOM05D003481 ORTHO05D004001 4.0e-205 718.8 656 61.0
BcaC09g51402 Brassica carinata HOM05D003481 ORTHO05D004001 5.2e-205 718.4 656 61.0
C01p13480 Brassica napus HOM05D003481 ORTHO05D004001 6.8e-205 718.0 654 61.2
BolC1t01321H Brassica oleracea HOM05D003481 ORTHO05D004001 6.8e-205 718.0 654 61.2
A03p51930 Brassica napus HOM05D003481 ORTHO05D004001 7.5e-204 714.5 656 61.0
SalBow7G3129 Salvia bowleyana HOM05D003481 ORTHO05D004001 2.9e-203 712.6 661 59.2
PSO063G1971 Papaver somniferum HOM05D003481 ORTHO05D004001 3.7e-203 712.2 657 61.0
DCAR_001341 Daucus carota HOM05D003481 ORTHO05D004001 1.2e-201 707.2 688 58.3
SGA_v2.0_scaffold341G49384 Striga asiatica HOM05D003481 ORTHO05D004001 2.0e-201 706.4 663 59.9
BraA03t14280Z Brassica rapa HOM05D003481 ORTHO05D004001 5.9e-201 704.9 661 59.2
Migut.H01305 Erythranthe guttata HOM05D003481 ORTHO05D004001 5.9e-201 704.9 661 58.2
Cc09_g07300 Coffea canephora HOM05D003481 ORTHO05D004001 6.6e-200 701.4 652 59.4
ATR1132G011 Amborella trichopoda HOM05D003481 ORTHO05D004001 5.8e-196 688.3 669 59.3
CDE02G2268 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 5.8e-196 688.3 652 57.8
Oeu008973.2 Olea europaea HOM05D003481 ORTHO05D004001 1.1e-194 684.1 719 54.7
CDE09G0686 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 1.4e-194 683.7 653 58.7
Ah.13g071230 Amaranthus hybridus HOM05D003481 ORTHO05D004001 2.5e-191 672.9 673 59.0
Zm00001eb088370 Zea mays HOM05D003481 ORTHO05D004001 2.5e-191 672.9 652 58.1
Zm00001eb419780 Zea mays HOM05D003481 ORTHO05D004001 1.6e-190 670.2 652 58.3
Manes.03G069500 Manihot esculenta HOM05D003481 ORTHO05D004001 3.9e-184 649.0 493 70.6
Nitab4.5_0000378g0100 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.5e-183 647.1 634 59.9
HPP92_026238 Vanilla planifolia HOM05D003481 ORTHO05D004001 2.1e-182 643.3 657 58.0
Mapoly0095s0011 Marchantia polymorpha HOM05D003481 ORTHO05D004001 4.9e-163 578.9 737 47.5
AagrBONN_evm.TU.Sc2ySwM_228.4333 Anthoceros agrestis HOM05D003481 ORTHO05D004001 1.5e-159 567.4 670 50.0
Pp3c11_18680 Physcomitrium patens HOM05D003481 ORTHO05D004001 4.3e-151 539.3 690 47.0
SMO137G0352 Selaginella moellendorffii HOM05D003481 ORTHO05D004001 1.3e-147 527.7 614 50.2
Haze_05982 Corylus avellana HOM05D003481 ORTHO05D004001 7.2e-138 495.4 478 60.7
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 7.4e-135 485.3 661 45.8
SEGI_29135 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 1.7e-118 431.0 445 55.3
Sabra16G0301200 Salix brachista HOM05D003481 ORTHO05D004001 1.2e-111 408.3 414 58.2
AagrBONN_evm.TU.Sc2ySwM_117.2303 Anthoceros agrestis HOM05D003481 ORTHO05D004001 4.8e-102 376.3 624 41.5
MBI19_g43313_MAGBIO Magnolia biondii HOM05D003481 ORTHO05D004001 1.4e-85 321.6 387 52.5
Sabra16G0299600 Salix brachista HOM05D003481 ORTHO05D004001 9.2e-77 292.4 277 62.5
arahy.Tifrunner.gnm1.ann1.16LSI5 Arachis hypogaea HOM05D003481 ORTHO05D004001 1.3e-70 271.9 300 58.7
CSS0048234 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 1.6e-68 265.0 194 70.1
CSS0035493 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 1.6e-60 238.4 234 57.7
CBR_g66144 Chara braunii HOM05D003481 ORTHO05D004001 7.6e-55 219.5 277 46.9
Nitab4.5_0001298g0070 Nicotiana tabacum HOM05D003481 ORTHO05D004001 2.9e-54 217.6 221 55.7
RcHm_v2.0_Chr7g0240301 Rosa chinensis HOM05D003481 ORTHO05D004001 4.6e-52 210.3 494 37.0
CBR_g45268 Chara braunii HOM05D003481 ORTHO05D004001 3.9e-51 207.2 256 49.2
SHI31589 Sapria himalayana HOM05D003481 ORTHO05D004001 3.1e-48 197.6 223 51.6
PRCOL_00001035 Prasinoderma coloniale HOM05D003481 ORTHO05D004001 6.9e-48 196.4 602 29.6
Actinidia29308 Actinidia chinensis HOM05D003481 ORTHO05D004001 7.6e-47 193.0 201 56.2
SEGI_21626 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 2.1e-44 184.9 149 67.1
Sabra16G0299500 Salix brachista HOM05D003481 ORTHO05D000002 7.6e-39 166.4 172 52.3
Nitab4.5_0001298g0060 Nicotiana tabacum HOM05D003481 ORTHO05D004001 3.8e-38 164.1 187 55.1
Nitab4.5_0025882g0010 Nicotiana tabacum HOM05D003481 ORTHO05D004001 2.4e-37 161.4 129 67.4
MCO09G025 Micromonas commoda HOM05D003481 ORTHO05D004001 1.4e-32 145.6 621 26.4
SHI31588 Sapria himalayana HOM05D003481 ORTHO05D004001 1.4e-29 135.6 87 81.6
Actinidia33646 Actinidia chinensis HOM05D003481 ORTHO05D004001 3.7e-25 120.9 89 71.9
Cfa023843 Carpinus fangiana HOM05D003481 ORTHO05D004001 3.7e-25 120.9 461 26.0
Aqoxy3G00998 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 4.8e-25 120.6 122 53.3
Cre02.g087551 Chlamydomonas reinhardtii HOM05D003481 ORTHO05D004001 1.1e-24 119.4 626 25.1
Haze_05980 Corylus avellana HOM05D003481 ORTHO05D004001 3.1e-24 117.9 171 42.7
SHI31590 Sapria himalayana HOM05D003481 ORTHO05D004001 1.5e-23 115.5 163 46.0
arahy.Tifrunner.gnm1.ann1.40643C Arachis hypogaea HOM05D003481 ORTHO05D004001 2.5e-21 108.2 60 95.0
Lsat_1_v5_gn_2_79640 Lactuca sativa HOM05D003481 ORTHO05D004001 2.5e-21 108.2 185 41.6
Lsat_1_v5_gn_3_92020 Lactuca sativa HOM05D002302 ORTHO05D002728 3.3e-18 97.8 101 53.5
arahy.Tifrunner.gnm1.ann1.SFPI36 Arachis hypogaea HOM05D003481 ORTHO05D004001 1.4e-16 92.4 55 87.3
SHI31587 Sapria himalayana HOM05D003481 ORTHO05D004001 1.4e-16 92.4 55 76.4
Lsat_1_v5_gn_0_25080 Lactuca sativa HOM05D003481 ORTHO05D004001 1.8e-16 92.0 158 39.9
SEGI_05968 Sequoiadendron giganteum HOM05D003481 ORTHO05D011771 5.0e-14 84.0 63 63.5
vmacro19556 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 2.1e-12 78.6 74 55.4
Lsat_1_v5_gn_0_13620 Lactuca sativa HOM05D002610 ORTHO05D002926 3.6e-12 77.8 78 52.6
Oeu018810.1 Olea europaea HOM05D003481 ORTHO05D004001 6.1e-12 77.0 81 51.9
Oeu001605.1 Olea europaea HOM05D003481 ORTHO05D004001 1.1e-10 72.8 148 36.5
vmacro19693 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 2.0e-10 72.0 55 63.6
vmacro19694 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 2.6e-10 71.6 62 61.3
Os04g0212200 Oryza sativa ssp. japonica HOM05D003481 ORTHO05D004001 9.7e-10 69.7 52 67.3
Aa31sc55G50 Aethionema arabicum HOM05D003481 ORTHO05D004001 1.3e-09 69.3 53 67.9
CSS0015411 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 1.3e-09 69.3 52 65.4
vmacro16031 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 4.8e-09 67.4 170 32.4
Lsat_1_v5_gn_9_116960 Lactuca sativa HOM05D003481 ORTHO05D004001 8.2e-09 66.6 52 69.2
HanXRQChr17g0556701 Helianthus annuus HOM05D003481 ORTHO05D004001 5.9e-07 60.5 74 47.3
Psat4g195400 Pisum sativum HOM05D000929 ORTHO05D002623 5.0e-06 57.4 33 81.8
SHI31584 Sapria himalayana HOM05D003481 ORTHO05D004001 5.0e-06 57.4 43 55.8


User provided reference genes

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