Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0K3GJ6 Arachis hypogaea HOM05D003066 ORTHO05D018497 1.2e-16 88.6 41 100.0
arahy.Tifrunner.gnm1.ann1.A9LG26 Arachis hypogaea HOM05D003066 ORTHO05D018497 1.2e-16 88.6 41 100.0
arahy.Tifrunner.gnm1.ann1.98I7BY Arachis hypogaea HOM05D003066 ORTHO05D018497 3.9e-15 83.6 41 95.1
arahy.Tifrunner.gnm1.ann1.VTG82A Arachis hypogaea HOM05D003066 ORTHO05D018497 1.3e-13 78.6 41 90.2
COL.COLO4_21057 Corchorus olitorius HOM05D003066 ORTHO05D004162 1.7e-13 78.2 41 92.7
Lj5g0020573 Lotus japonicus HOM05D003066 ORTHO05D004162 1.7e-13 78.2 41 92.7
Psat6g020400 Pisum sativum HOM05D003066 ORTHO05D004162 1.7e-13 78.2 41 92.7
VMungo0647G0915 Vigna mungo HOM05D003066 ORTHO05D004162 1.7e-13 78.2 41 92.7
Aqoxy7G01226 Aquilegia oxysepala HOM05D003066 ORTHO05D004162 2.8e-13 77.4 41 90.2
Sp7g30770 Schrenkiella parvula HOM05D003066 ORTHO05D004162 2.8e-13 77.4 41 90.2
TPR.G13011 Trifolium pratense HOM05D003066 ORTHO05D004162 3.7e-13 77.0 41 90.2
Cpa.g.sc7.178 Carica papaya HOM05D003066 ORTHO05D004162 4.8e-13 76.6 40 92.5
Ca_13165_v3 Cicer arietinum L. HOM05D003066 ORTHO05D004162 4.8e-13 76.6 41 90.2
Glyma.14G094700 Glycine max HOM05D003066 ORTHO05D004162 4.8e-13 76.6 41 90.2
Glyma.17G228800 Glycine max HOM05D003066 ORTHO05D004162 4.8e-13 76.6 41 90.2
Gohir.A05G042300 Gossypium hirsutum HOM05D003066 ORTHO05D004162 4.8e-13 76.6 40 92.5
Gohir.D05G044000 Gossypium hirsutum HOM05D003066 ORTHO05D004162 4.8e-13 76.6 40 92.5
Gorai.009G045100 Gossypium raimondii HOM05D003066 ORTHO05D004162 4.8e-13 76.6 40 92.5
SalBow1G0202 Salvia bowleyana HOM05D003066 ORTHO05D004162 4.8e-13 76.6 40 92.5
THA.LOC104799166 Tarenaya hassleriana HOM05D003066 ORTHO05D004162 4.8e-13 76.6 40 92.5
THA.LOC104803730 Tarenaya hassleriana HOM05D003066 ORTHO05D004162 4.8e-13 76.6 41 90.2
arahy.Tifrunner.gnm1.ann1.9IV7G6 Arachis hypogaea HOM05D003066 ORTHO05D004162 6.3e-13 76.3 41 90.2
arahy.Tifrunner.gnm1.ann1.W9U8CY Arachis hypogaea HOM05D003066 ORTHO05D004162 6.3e-13 76.3 41 90.2
CiPaw.15G039000 Carya illinoinensis HOM05D003066 ORTHO05D004162 6.3e-13 76.3 41 90.2
ECA240G4675 Erigeron canadensis HOM05D003066 ORTHO05D004162 6.3e-13 76.3 41 85.4
EL10Ac2g03886 Beta vulgaris HOM05D003066 ORTHO05D004162 8.2e-13 75.9 41 90.2
DCAR_003129 Daucus carota HOM05D003066 ORTHO05D004162 8.2e-13 75.9 41 87.8
Duzib150G0748 Durio zibethinus HOM05D003066 ORTHO05D004162 8.2e-13 75.9 41 87.8
Duzib168G0564 Durio zibethinus HOM05D003066 ORTHO05D004162 8.2e-13 75.9 41 87.8
Duzib187G0606 Durio zibethinus HOM05D003066 ORTHO05D004162 8.2e-13 75.9 41 87.8
Gohir.A06G089300 Gossypium hirsutum HOM05D003066 ORTHO05D004162 8.2e-13 75.9 41 87.8
Gohir.D06G087600 Gossypium hirsutum HOM05D003066 ORTHO05D004162 8.2e-13 75.9 41 87.8
Gorai.010G101200 Gossypium raimondii HOM05D003066 ORTHO05D004162 8.2e-13 75.9 41 87.8
Phvul.001G035500 Phaseolus vulgaris HOM05D003066 ORTHO05D004162 8.2e-13 75.9 39 92.3
arahy.Tifrunner.gnm1.ann1.ET6FP5 Arachis hypogaea HOM05D003066 ORTHO05D018497 1.1e-12 75.5 41 87.8
CARHR241020 Cardamine hirsuta HOM05D003066 ORTHO05D004162 1.1e-12 75.5 41 87.8
Medtr1g016230 Medicago truncatula HOM05D003066 ORTHO05D004162 1.1e-12 75.5 41 87.8
AL7G18660 Arabidopsis lyrata HOM05D003066 ORTHO05D004162 1.4e-12 75.1 41 87.8
AT4G33010 Arabidopsis thaliana HOM05D003066 ORTHO05D004162 1.4e-12 75.1 41 87.8
CANSAT25G3853 Cannabis sativa HOM05D003066 ORTHO05D004162 1.4e-12 75.1 41 87.8
Carub.0004s0590 Capsella rubella HOM05D003066 ORTHO05D004162 1.4e-12 75.1 41 87.8
AUR62022077 Chenopodium quinoa HOM05D003066 ORTHO05D004162 1.4e-12 75.1 41 87.8
ECA246G1238 Erigeron canadensis HOM05D003066 ORTHO05D004162 1.4e-12 75.1 41 87.8
SGA_v2.0_scaffold163G38030 Striga asiatica HOM05D003066 ORTHO05D004162 1.4e-12 75.1 41 87.8
Haze_18191 Corylus avellana HOM05D003066 ORTHO05D004162 1.8e-12 74.7 41 87.8
Eucgr.C00646 Eucalyptus grandis HOM05D003066 ORTHO05D004162 1.8e-12 74.7 41 87.8
Rhsim11G0044200 Rhododendron simsii HOM05D003066 ORTHO05D004162 1.8e-12 74.7 41 87.8
SGA_v2.0_scaffold169G38693 Striga asiatica HOM05D003066 ORTHO05D004162 1.8e-12 74.7 38 94.7
vmacro00142 Vaccinium macrocarpon HOM05D003066 ORTHO05D004162 1.8e-12 74.7 41 87.8
GSVIVG01015211001 Vitis vinifera HOM05D003066 ORTHO05D004162 1.8e-12 74.7 41 87.8
CARHR114810 Cardamine hirsuta HOM05D003066 ORTHO05D004162 2.4e-12 74.3 41 87.8
Migut.E01566 Erythranthe guttata HOM05D003066 ORTHO05D004162 2.4e-12 74.3 41 85.4
FAN15G2565 Fragaria x ananassa HOM05D003066 ORTHO05D004162 2.4e-12 74.3 40 90.0
FAN20G2891 Fragaria x ananassa HOM05D003066 ORTHO05D004162 2.4e-12 74.3 40 90.0
FAN27G1891 Fragaria x ananassa HOM05D003066 ORTHO05D004162 2.4e-12 74.3 40 90.0
Lsat_1_v5_gn_3_24441 Lactuca sativa HOM05D003066 ORTHO05D004162 2.4e-12 74.3 41 85.4
Lj7C271T2 Lonicera japonica HOM05D003066 ORTHO05D004162 2.4e-12 74.3 40 90.0
Lj7C275T3 Lonicera japonica HOM05D003066 ORTHO05D004162 2.4e-12 74.3 40 90.0
AUR62009150 Chenopodium quinoa HOM05D003066 ORTHO05D004162 3.1e-12 73.9 41 85.4
MELO3C010754.2 Cucumis melo HOM05D003066 ORTHO05D004162 3.1e-12 73.9 41 85.4
HanXRQChr13g0410471 Helianthus annuus HOM05D003066 ORTHO05D004162 3.1e-12 73.9 41 82.9
Lsat_1_v5_gn_5_45900 Lactuca sativa HOM05D003066 ORTHO05D004162 3.1e-12 73.9 41 82.9
Peaxi162Scf00477g00214 Petunia axillaris HOM05D003066 ORTHO05D004162 3.1e-12 73.9 41 85.4
GSVIVG01035408001 Vitis vinifera HOM05D003066 ORTHO05D004162 3.1e-12 73.9 40 87.5
Ah.10g034390 Amaranthus hybridus HOM05D003066 ORTHO05D004162 4.1e-12 73.6 40 87.5
AL4G18230 Arabidopsis lyrata HOM05D003066 ORTHO05D004162 4.1e-12 73.6 41 85.4
AT2G26080 Arabidopsis thaliana HOM05D003066 ORTHO05D004162 4.1e-12 73.6 41 85.4
arahy.Tifrunner.gnm1.ann1.J6ZNZP Arachis hypogaea HOM05D003066 ORTHO05D018497 4.1e-12 73.6 41 87.8
Carub.0007s0747 Capsella rubella HOM05D003066 ORTHO05D004162 4.1e-12 73.6 41 85.4
CAN.G208.91 Capsicum annuum HOM05D003066 ORTHO05D004162 4.1e-12 73.6 41 85.4
Migut.A00136 Erythranthe guttata HOM05D003066 ORTHO05D004162 4.1e-12 73.6 41 85.4
Thhalv10001891m.g Eutrema salsugineum HOM05D003066 ORTHO05D004162 4.1e-12 73.6 41 85.4
HanXRQChr06g0173861 Helianthus annuus HOM05D003066 ORTHO05D004162 4.1e-12 73.6 41 85.4
HanXRQChr17g0538191 Helianthus annuus HOM05D003066 ORTHO05D004162 4.1e-12 73.6 41 85.4
Manes.16G080300 Manihot esculenta HOM05D003066 ORTHO05D004162 4.1e-12 73.6 40 87.5
Oeu003985.1 Olea europaea HOM05D003066 ORTHO05D004162 4.1e-12 73.6 41 82.9
PSO210G2602 Papaver somniferum HOM05D003066 ORTHO05D004162 4.1e-12 73.6 41 85.4
PSO210G3975 Papaver somniferum HOM05D003066 ORTHO05D004162 4.1e-12 73.6 41 85.4
Hund03339 Selenicereus undatus HOM05D003066 ORTHO05D004162 4.1e-12 73.6 41 85.4
unitig_26.g9798 Utricularia gibba HOM05D003066 ORTHO05D004162 4.1e-12 73.6 41 85.4
unitig_749.g13830 Utricularia gibba HOM05D003066 ORTHO05D004162 4.1e-12 73.6 41 85.4
Aa31LG5G9680 Aethionema arabicum HOM05D003066 ORTHO05D004162 5.3e-12 73.2 41 85.4
Thhalv10024257m.g Eutrema salsugineum HOM05D003066 ORTHO05D004162 5.3e-12 73.2 41 85.4
FvH4_2g31940 Fragaria vesca HOM05D003066 ORTHO05D004162 5.3e-12 73.2 40 87.5
FAN24G0169 Fragaria x ananassa HOM05D003066 ORTHO05D004162 5.3e-12 73.2 40 87.5
Glyma.04G051200 Glycine max HOM05D003066 ORTHO05D004162 5.3e-12 73.2 41 87.8
Glyma.06G052100 Glycine max HOM05D003066 ORTHO05D004162 5.3e-12 73.2 41 87.8
Lalb_Chr14g0367671 Lupinus albus HOM05D003066 ORTHO05D004162 5.3e-12 73.2 41 85.4
TWI34G1165 Tripterygium wilfordii HOM05D003066 ORTHO05D004162 5.3e-12 73.2 40 87.5
MSTRG.1683 Avicennia marina HOM05D003066 ORTHO05D004162 7.0e-12 72.8 41 82.9
CAN.G117.1 Capsicum annuum HOM05D003066 ORTHO05D004162 7.0e-12 72.8 40 87.5
Ciclev10007310m.g Citrus clementina HOM05D003066 ORTHO05D004162 7.0e-12 72.8 40 87.5
Sp4g05960 Schrenkiella parvula HOM05D003066 ORTHO05D004162 7.0e-12 72.8 41 85.4
Sed0010471 Sechium edule HOM05D003066 ORTHO05D004162 7.0e-12 72.8 41 85.4
Atru.chr7.1062 Acer truncatum HOM05D003066 ORTHO05D004162 9.1e-12 72.4 40 87.5
Cfa017953 Carpinus fangiana HOM05D003066 ORTHO05D004162 9.1e-12 72.4 41 85.4
CDE07G0857 Ceratophyllum demersum HOM05D003066 ORTHO05D004162 9.1e-12 72.4 40 87.5
Dinv22899 Davidia involucrata HOM05D003066 ORTHO05D004162 9.1e-12 72.4 41 85.4
MBI04_g34129_MAGBIO Magnolia biondii HOM05D003066 ORTHO05D004162 9.1e-12 72.4 41 85.4
MD08G1061500 Malus domestica HOM05D003066 ORTHO05D004162 9.1e-12 72.4 40 87.5
MD15G1060200 Malus domestica HOM05D003066 ORTHO05D004162 9.1e-12 72.4 40 87.5
QL02p001223 Quercus lobata HOM05D003066 ORTHO05D004162 9.1e-12 72.4 41 85.4
TAR383G0156 Trochodendron aralioides HOM05D003066 ORTHO05D004162 9.1e-12 72.4 41 85.4
TAR626G0016 Trochodendron aralioides HOM05D003066 ORTHO05D004162 9.1e-12 72.4 41 85.4
HPP92_006466 Vanilla planifolia HOM05D003066 ORTHO05D004162 9.1e-12 72.4 41 85.4
MSTRG.14054 Avicennia marina HOM05D003066 ORTHO05D004162 1.2e-11 72.0 40 85.0
CDE06G2405 Ceratophyllum demersum HOM05D003066 ORTHO05D004162 1.2e-11 72.0 40 87.5
ClCG08G017010 Citrullus lanatus HOM05D003066 ORTHO05D004162 1.2e-11 72.0 41 82.9
CsaV3_2G025570 Cucumis sativus L. HOM05D003066 ORTHO05D004162 1.2e-11 72.0 41 82.9
Dinv27984 Davidia involucrata HOM05D003066 ORTHO05D004162 1.2e-11 72.0 41 82.9
MBI01_g09957_MAGBIO Magnolia biondii HOM05D003066 ORTHO05D004162 1.2e-11 72.0 41 82.9
Prupe.1G412100 Prunus persica HOM05D003066 ORTHO05D004162 1.2e-11 72.0 40 85.0
TWI32G0839 Tripterygium wilfordii HOM05D003066 ORTHO05D004162 1.2e-11 72.0 38 89.5
ATR0749G006 Amborella trichopoda HOM05D003066 ORTHO05D004162 1.6e-11 71.6 41 82.9
VMungo1309G0513 Vigna mungo HOM05D003066 ORTHO05D004162 1.6e-11 71.6 41 85.4
Eucgr.C03047 Eucalyptus grandis HOM05D003066 ORTHO05D004162 2.0e-11 71.2 41 82.9
Potri.006G229300 Populus trichocarpa HOM05D003066 ORTHO05D004162 2.0e-11 71.2 40 85.0
PGR031G0611 Punica granatum HOM05D003066 ORTHO05D004162 2.0e-11 71.2 41 82.9
CSS0005439 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 2.6e-11 70.9 40 85.0
CSS0037920 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 2.6e-11 70.9 40 85.0
Hma1.2p1_0482F.1_g162430 Hydrangea macrophylla HOM05D003066 ORTHO05D004162 2.6e-11 70.9 41 82.9
Hma1.2p1_1957F.1_g309050 Hydrangea macrophylla HOM05D003066 ORTHO05D004162 2.6e-11 70.9 41 82.9
Phvul.009G077400 Phaseolus vulgaris HOM05D003066 ORTHO05D004162 2.6e-11 70.9 41 82.9
QL02p062818 Quercus lobata HOM05D003066 ORTHO05D004162 2.6e-11 70.9 41 82.9
Rhsim07G0142300 Rhododendron simsii HOM05D003066 ORTHO05D004162 2.6e-11 70.9 40 85.0
RcHm_v2.0_Chr6g0310901 Rosa chinensis HOM05D003066 ORTHO05D004162 2.6e-11 70.9 40 85.0
Sabra06G0177800 Salix brachista HOM05D003066 ORTHO05D004162 2.6e-11 70.9 40 85.0
Thecc.09G053700 Theobroma cacao HOM05D003066 ORTHO05D004162 2.6e-11 70.9 40 85.0
vmacro14247 Vaccinium macrocarpon HOM05D003066 ORTHO05D004162 2.6e-11 70.9 40 85.0
Zm00001eb406880 Zea mays HOM05D003066 ORTHO05D004162 2.6e-11 70.9 40 85.0
Lalb_Chr23g0267761 Lupinus albus HOM05D003066 ORTHO05D004162 3.5e-11 70.5 40 82.5
Nn8g38884 Nelumbo nucifera HOM05D003066 ORTHO05D004162 3.5e-11 70.5 41 80.5
Nitab4.5_0001367g0020 Nicotiana tabacum HOM05D003066 ORTHO05D004162 3.5e-11 70.5 41 82.9
Nitab4.5_0003627g0010 Nicotiana tabacum HOM05D003066 ORTHO05D004162 3.5e-11 70.5 41 82.9
Solyc08g065220.3 Solanum lycopersicum HOM05D003066 ORTHO05D004162 3.5e-11 70.5 41 82.9
Sopen08g018830 Solanum pennellii HOM05D003066 ORTHO05D004162 3.5e-11 70.5 41 82.9
PGSC0003DMG400029938 Solanum tuberosum HOM05D003066 ORTHO05D004162 3.5e-11 70.5 41 82.9
Hund19452 Selenicereus undatus HOM05D003066 ORTHO05D004162 4.5e-11 70.1 41 80.5
Cc08_g10590 Coffea canephora HOM05D003066 ORTHO05D004162 5.9e-11 69.7 40 82.5
Os06g0611900 Oryza sativa ssp. japonica HOM05D003066 ORTHO05D004162 7.7e-11 69.3 40 82.5
Mapoly0068s0042 Marchantia polymorpha HOM05D003066 ORTHO05D004162 1.0e-10 68.9 40 82.5
Pp3c16_4520 Physcomitrium patens HOM05D003066 ORTHO05D004162 1.0e-10 68.9 41 82.9
Pp3c16_4550 Physcomitrium patens HOM05D003066 ORTHO05D004162 1.0e-10 68.9 41 82.9
Sc09g0009820 Simmondsia chinensis HOM05D003066 ORTHO05D004162 1.0e-10 68.9 40 80.0
CSS0003286 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 1.3e-10 68.6 40 82.5
CSS0010005 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 1.3e-10 68.6 40 82.5
Pp3c27_5030 Physcomitrium patens HOM05D003066 ORTHO05D004162 2.9e-10 67.4 41 80.5
SEGI_37657 Sequoiadendron giganteum HOM05D003066 ORTHO05D004162 5.0e-10 66.6 40 80.0
Lsat_1_v5_gn_6_76321 Lactuca sativa HOM05D003066 ORTHO05D018497 6.5e-10 66.2 38 78.9
BcaC09g52098 Brassica carinata HOM05D003066 ORTHO05D004162 1.1e-09 65.5 40 77.5
A01p05180 Brassica napus HOM05D003066 ORTHO05D004162 1.1e-09 65.5 40 77.5
C01p05670 Brassica napus HOM05D003066 ORTHO05D004162 1.1e-09 65.5 40 77.5
BolC1t00546H Brassica oleracea HOM05D003066 ORTHO05D004162 1.1e-09 65.5 40 77.5
BraA01t00501Z Brassica rapa HOM05D003066 ORTHO05D004162 1.1e-09 65.5 40 77.5
SEGI_16222 Sequoiadendron giganteum HOM05D003066 ORTHO05D004162 1.5e-09 65.1 40 77.5
SMO201G0119 Selaginella moellendorffii HOM05D003066 ORTHO05D004162 5.5e-09 63.2 39 79.5
Oeu009352.1 Olea europaea HOM05D003066 ORTHO05D004162 7.2e-09 62.8 41 73.2
CBR_g3314 Chara braunii HOM05D003066 ORTHO05D004162 4.7e-08 60.1 40 72.5
CAN.G6.14 Capsicum annuum HOM05D003066 ORTHO05D018497 8.0e-08 59.3 41 70.7
PRCOL_00000289 Prasinoderma coloniale HOM05D003066 ORTHO05D004162 1.0e-07 58.9 37 70.3
arahy.Tifrunner.gnm1.ann1.JUU20C Arachis hypogaea HOM05D003066 ORTHO05D012067 1.8e-07 58.2 40 72.5
arahy.Tifrunner.gnm1.ann1.Z4L9BT Arachis hypogaea HOM05D003066 ORTHO05D012067 1.8e-07 58.2 40 72.5
Cre12.g534800 Chlamydomonas reinhardtii HOM05D003066 ORTHO05D004162 8.8e-07 55.8 41 63.4


User provided reference genes

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