Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.08G4N8 Arachis hypogaea HOM05D064344 ORTHO05D085511 2.2e-85 318.9 160 100.0
arahy.Tifrunner.gnm1.ann1.BKDZ2C Arachis hypogaea HOM05D001322 ORTHO05D018504 3.6e-40 168.7 152 63.8
arahy.Tifrunner.gnm1.ann1.RYB34C Arachis hypogaea HOM05D064344 ORTHO05D084761 8.7e-26 120.9 81 77.8
arahy.Tifrunner.gnm1.ann1.WC4CIS Arachis hypogaea HOM05D001322 ORTHO05D001301 2.4e-15 86.3 129 45.0
arahy.Tifrunner.gnm1.ann1.3EVA1Y Arachis hypogaea HOM05D001322 ORTHO05D001301 1.7e-13 80.1 129 45.0
VMungo1309G0718 Vigna mungo HOM05D001322 ORTHO05D001301 1.4e-12 77.0 130 42.3
TPR.G17289 Trifolium pratense HOM05D001322 ORTHO05D001301 2.1e-11 73.2 130 42.3
Medtr3g091090 Medicago truncatula HOM05D001322 ORTHO05D001301 2.7e-11 72.8 133 42.1
Ca_16689_v3 Cicer arietinum L. HOM05D001322 ORTHO05D001301 6.1e-11 71.6 130 41.5
Glyma.04G237300 Glycine max HOM05D001322 ORTHO05D001301 6.1e-11 71.6 130 41.5
Glyma.06G126700 Glycine max HOM05D001322 ORTHO05D001301 6.1e-11 71.6 130 40.8
MD01G1221000 Malus domestica HOM05D001322 ORTHO05D001301 7.9e-11 71.2 130 40.8
GSVIVG01028700001 Vitis vinifera HOM05D001322 ORTHO05D001301 1.0e-10 70.9 129 40.3
Sc19g0000900 Simmondsia chinensis HOM05D001322 ORTHO05D001301 1.3e-10 70.5 132 40.2
CANSAT21G1579 Cannabis sativa HOM05D001322 ORTHO05D001301 2.3e-10 69.7 129 39.5
MD07G1291100 Malus domestica HOM05D001322 ORTHO05D001301 2.3e-10 69.7 129 40.3
Cc02_g01740 Coffea canephora HOM05D001322 ORTHO05D001301 3.0e-10 69.3 130 40.8
Nn1g01881 Nelumbo nucifera HOM05D001322 ORTHO05D001301 3.0e-10 69.3 130 40.0
Medtr1g028360 Medicago truncatula HOM05D001322 ORTHO05D001301 5.1e-10 68.6 129 38.0
Manes.14G007244 Manihot esculenta HOM05D001322 ORTHO05D001301 6.7e-10 68.2 129 40.3
Gohir.A12G251000 Gossypium hirsutum HOM05D001322 ORTHO05D001301 8.7e-10 67.8 141 37.6
Gohir.D08G103400 Gossypium hirsutum HOM05D001322 ORTHO05D001301 8.7e-10 67.8 132 39.4
Gorai.004G115100 Gossypium raimondii HOM05D001322 ORTHO05D001301 8.7e-10 67.8 132 39.4
SGA_v2.0_scaffold2010G54068 Striga asiatica HOM05D001322 ORTHO05D001301 8.7e-10 67.8 137 37.2
Zm00001eb230230 Zea mays HOM05D001322 ORTHO05D001301 8.7e-10 67.8 130 36.9
Ah.07g205930 Amaranthus hybridus HOM05D001322 ORTHO05D001301 1.1e-09 67.4 134 37.3
AL8G27770 Arabidopsis lyrata HOM05D001322 ORTHO05D001301 1.1e-09 67.4 134 39.6
Gohir.D12G251800 Gossypium hirsutum HOM05D001322 ORTHO05D001301 1.1e-09 67.4 137 37.2
Gorai.008G269900 Gossypium raimondii HOM05D001322 ORTHO05D001301 1.1e-09 67.4 137 37.2
TAR375G0410 Trochodendron aralioides HOM05D001322 ORTHO05D001301 1.1e-09 67.4 132 40.2
TAR375G0456 Trochodendron aralioides HOM05D001322 ORTHO05D001301 1.1e-09 67.4 132 40.2
Lalb_Chr11g0066701 Lupinus albus HOM05D001322 ORTHO05D001301 1.5e-09 67.0 130 40.0
MBI07_g37610_MAGBIO Magnolia biondii HOM05D001322 ORTHO05D001301 1.5e-09 67.0 139 39.6
Nitab4.5_0012491g0010 Nicotiana tabacum HOM05D001322 ORTHO05D001301 1.5e-09 67.0 131 38.9
HPP92_006485 Vanilla planifolia HOM05D001322 ORTHO05D001301 1.5e-09 67.0 138 36.2
Phvul.009G054800 Phaseolus vulgaris HOM05D001322 ORTHO05D001301 1.9e-09 66.6 122 39.3
unitig_46.g18815 Utricularia gibba HOM05D001322 ORTHO05D001301 1.9e-09 66.6 132 37.1
AT5G53120 Arabidopsis thaliana HOM05D001322 ORTHO05D001301 2.5e-09 66.2 129 38.0
Carub.0008s1332 Capsella rubella HOM05D001322 ORTHO05D001301 2.5e-09 66.2 129 38.0
CiPaw.05G255900 Carya illinoinensis HOM05D001322 ORTHO05D001301 2.5e-09 66.2 132 37.9
Haze_00159 Corylus avellana HOM05D001322 ORTHO05D001301 2.5e-09 66.2 130 40.0
CsaV3_5G000580 Cucumis sativus L. HOM05D001322 ORTHO05D001301 2.5e-09 66.2 129 38.0
Duzib205G0821 Durio zibethinus HOM05D001322 ORTHO05D001301 2.5e-09 66.2 139 38.1
Prupe.2G312400 Prunus persica HOM05D001322 ORTHO05D001301 2.5e-09 66.2 130 40.0
SalBow4G0680 Salvia bowleyana HOM05D001322 ORTHO05D001301 2.5e-09 66.2 133 39.1
Atru.chr1.143 Acer truncatum HOM05D001322 ORTHO05D001301 3.3e-09 65.9 131 39.7
Gohir.A08G096200 Gossypium hirsutum HOM05D001322 ORTHO05D001301 3.3e-09 65.9 132 38.6
Lj1g0001257 Lotus japonicus HOM05D001322 ORTHO05D001301 3.3e-09 65.9 133 36.8
QL09p010247 Quercus lobata HOM05D001322 ORTHO05D001301 3.3e-09 65.9 132 37.1
SalBow4G3105 Salvia bowleyana HOM05D001322 ORTHO05D001301 3.3e-09 65.9 133 38.3
COL.COLO4_38239 Corchorus olitorius HOM05D001322 ORTHO05D001301 4.3e-09 65.5 132 38.6
Thecc.03G194600 Theobroma cacao HOM05D001322 ORTHO05D001301 4.3e-09 65.5 132 38.6
Os06g0528600 Oryza sativa ssp. japonica HOM05D001322 ORTHO05D001301 5.7e-09 65.1 130 36.2
Potri.012G002600 Populus trichocarpa HOM05D001322 ORTHO05D001301 5.7e-09 65.1 129 38.0
Sopen03g003220 Solanum pennellii HOM05D001322 ORTHO05D001301 5.7e-09 65.1 129 37.2
TWI14G0128 Tripterygium wilfordii HOM05D001322 ORTHO05D001301 7.4e-09 64.7 133 39.1
EL10Ac3g05325 Beta vulgaris HOM05D001322 ORTHO05D001301 9.7e-09 64.3 132 37.9
ClCG01G000500 Citrullus lanatus HOM05D001322 ORTHO05D001301 9.7e-09 64.3 129 37.2
Manes.06G158700 Manihot esculenta HOM05D001322 ORTHO05D001301 9.7e-09 64.3 129 38.0
PGR042G2191 Punica granatum HOM05D001322 ORTHO05D001301 9.7e-09 64.3 131 38.9
Sed0016425 Sechium edule HOM05D001322 ORTHO05D001301 9.7e-09 64.3 130 38.5
Solyc03g007240.3 Solanum lycopersicum HOM05D001322 ORTHO05D001301 9.7e-09 64.3 129 37.2
ATR0188G012 Amborella trichopoda HOM05D001322 ORTHO05D001301 1.3e-08 63.9 130 38.5
Sed0009588 Sechium edule HOM05D001322 ORTHO05D001301 1.3e-08 63.9 129 37.2
TAR629G0878 Trochodendron aralioides HOM05D001322 ORTHO05D001301 1.3e-08 63.9 130 39.2
Zm00001eb204260 Zea mays HOM05D001322 ORTHO05D001301 1.3e-08 63.9 130 35.4
Duzib068G0827 Durio zibethinus HOM05D001322 ORTHO05D001301 1.6e-08 63.5 130 39.2
Lj1C1014G8 Lonicera japonica HOM05D001322 ORTHO05D001301 1.6e-08 63.5 129 38.8
Psat5g077760 Pisum sativum HOM05D001322 ORTHO05D001301 1.6e-08 63.5 130 37.7
TWI39G0151 Tripterygium wilfordii HOM05D001322 ORTHO05D001301 1.6e-08 63.5 129 38.0
Aqoxy7G00117 Aquilegia oxysepala HOM05D001322 ORTHO05D001301 2.8e-08 62.8 129 38.8
CSS0007183 Camellia sinensis var. sinensis HOM05D001322 ORTHO05D001301 2.8e-08 62.8 130 35.4
PGSC0003DMG400009077 Solanum tuberosum HOM05D001322 ORTHO05D001301 2.8e-08 62.8 129 36.4
MSTRG.27038 Avicennia marina HOM05D001322 ORTHO05D001301 3.7e-08 62.4 129 37.2
MBI07_g23929_MAGBIO Magnolia biondii HOM05D001322 ORTHO05D001301 3.7e-08 62.4 131 40.5
CiPaw.06G009600 Carya illinoinensis HOM05D001322 ORTHO05D001301 4.8e-08 62.0 140 34.3
CsaV3_3G028000 Cucumis sativus L. HOM05D001322 ORTHO05D001301 4.8e-08 62.0 131 38.9
Eucgr.A01487 Eucalyptus grandis HOM05D001322 ORTHO05D001301 4.8e-08 62.0 130 36.9
FAN03G2740 Fragaria x ananassa HOM05D001322 ORTHO05D001301 4.8e-08 62.0 151 35.1
FvH4_7g31820 Fragaria vesca HOM05D001322 ORTHO05D001301 6.3e-08 61.6 129 37.2
FAN01G0681 Fragaria x ananassa HOM05D001322 ORTHO05D001301 6.3e-08 61.6 129 37.2
FAN06G0578 Fragaria x ananassa HOM05D001322 ORTHO05D001301 6.3e-08 61.6 129 37.2
FAN06G1996 Fragaria x ananassa HOM05D001322 ORTHO05D001301 6.3e-08 61.6 129 37.2
FAN10G2653 Fragaria x ananassa HOM05D001322 ORTHO05D001301 6.3e-08 61.6 129 37.2
FAN10G2745 Fragaria x ananassa HOM05D001322 ORTHO05D001301 6.3e-08 61.6 129 37.2
Peaxi162Scf00198g00014 Petunia axillaris HOM05D001322 ORTHO05D001301 6.3e-08 61.6 131 37.4
THA.LOC104800298 Tarenaya hassleriana HOM05D001322 ORTHO05D001301 6.3e-08 61.6 133 34.6
Actinidia08635 Actinidia chinensis HOM05D001322 ORTHO05D001301 8.2e-08 61.2 132 37.1
CAN.G108.44 Capsicum annuum HOM05D001322 ORTHO05D001301 8.2e-08 61.2 141 36.2
Migut.F00231 Erythranthe guttata HOM05D001322 ORTHO05D001301 8.2e-08 61.2 128 35.2
DCAR_010607 Daucus carota HOM05D001322 ORTHO05D001301 1.1e-07 60.8 141 35.5
CSS0032849 Camellia sinensis var. sinensis HOM05D001322 ORTHO05D001301 1.4e-07 60.5 132 37.1
CARHR266150 Cardamine hirsuta HOM05D001322 ORTHO05D001301 1.4e-07 60.5 129 35.7
ClCG05G008810 Citrullus lanatus HOM05D001322 ORTHO05D001301 1.4e-07 60.5 131 38.2
MELO3C008477.2 Cucumis melo HOM05D001322 ORTHO05D001301 1.4e-07 60.5 131 38.2
Dinv35319 Davidia involucrata HOM05D001322 ORTHO05D001301 1.4e-07 60.5 133 37.6
Hma1.2p1_0538F.1_g174440 Hydrangea macrophylla HOM05D001322 ORTHO05D001301 1.4e-07 60.5 132 37.1
Oeu037103.2 Olea europaea HOM05D001322 ORTHO05D001301 1.4e-07 60.5 156 34.0
Lsat_1_v5_gn_8_5021 Lactuca sativa HOM05D001322 ORTHO05D001301 1.8e-07 60.1 131 36.6
Zm00001eb383120 Zea mays HOM05D001322 ORTHO05D001301 1.8e-07 60.1 130 33.1
BcaB05g22013 Brassica carinata HOM05D001322 ORTHO05D001301 2.4e-07 59.7 129 37.2
AUR62006132 Chenopodium quinoa HOM05D001322 ORTHO05D001301 2.4e-07 59.7 124 35.5
CDE10G0118 Ceratophyllum demersum HOM05D001322 ORTHO05D001301 3.1e-07 59.3 130 35.4
Dinv05479 Davidia involucrata HOM05D001322 ORTHO05D001301 3.1e-07 59.3 128 37.5
Lsat_1_v5_gn_2_135921 Lactuca sativa HOM05D001322 ORTHO05D001301 3.1e-07 59.3 132 39.4
Aa31LG3G9350 Aethionema arabicum HOM05D001322 ORTHO05D001301 4.1e-07 58.9 129 34.1
CSS0006620 Camellia sinensis var. sinensis HOM05D001322 ORTHO05D001301 5.3e-07 58.5 136 36.0
CDE10G1134 Ceratophyllum demersum HOM05D001322 ORTHO05D001301 5.3e-07 58.5 130 36.2
Thhalv10013929m.g Eutrema salsugineum HOM05D001322 ORTHO05D001301 5.3e-07 58.5 129 36.4
Oeu036105.1 Olea europaea HOM05D001322 ORTHO05D001301 5.3e-07 58.5 129 35.7
A02p11280 Brassica napus HOM05D001322 ORTHO05D001301 6.9e-07 58.2 130 35.4
BraA02t06190Z Brassica rapa HOM05D001322 ORTHO05D001301 6.9e-07 58.2 130 35.4
Ciclev10006705m.g Citrus clementina HOM05D001322 ORTHO05D001301 6.9e-07 58.2 123 36.6
TAR636G0118 Trochodendron aralioides HOM05D001322 ORTHO05D001301 6.9e-07 58.2 130 37.7
AUR62019357 Chenopodium quinoa HOM05D001322 ORTHO05D001301 9.0e-07 57.8 126 34.9
HanXRQChr13g0393111 Helianthus annuus HOM05D001322 ORTHO05D001301 9.0e-07 57.8 131 35.9
RcHm_v2.0_Chr1g0381051 Rosa chinensis HOM05D001322 ORTHO05D001301 9.0e-07 57.8 129 36.4
BcaC03g14453 Brassica carinata HOM05D001322 ORTHO05D001301 1.2e-06 57.4 130 36.2
C02p18640 Brassica napus HOM05D001322 ORTHO05D001301 1.2e-06 57.4 130 36.2
BolC2t08009H Brassica oleracea HOM05D001322 ORTHO05D001301 1.2e-06 57.4 130 36.2
Rhsim03G0201100 Rhododendron simsii HOM05D001322 ORTHO05D001301 1.2e-06 57.4 128 36.7
Sp6g15290 Schrenkiella parvula HOM05D001322 ORTHO05D001301 1.5e-06 57.0 129 35.7
ECA233G0891 Erigeron canadensis HOM05D001322 ORTHO05D001301 3.4e-06 55.8 127 34.6
Hund11677 Selenicereus undatus HOM05D001322 ORTHO05D001301 3.4e-06 55.8 132 35.6
BcaB08g35671 Brassica carinata HOM05D001322 ORTHO05D001301 4.5e-06 55.5 134 35.8
A10p10620 Brassica napus HOM05D001322 ORTHO05D001301 4.5e-06 55.5 130 34.6
BraA10t43143Z Brassica rapa HOM05D001322 ORTHO05D001301 4.5e-06 55.5 130 34.6
Nitab4.5_0000714g0010 Nicotiana tabacum HOM05D001322 ORTHO05D001301 5.9e-06 55.1 131 35.9


User provided reference genes

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