Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.01UMM0 Arachis hypogaea HOM05D002899 ORTHO05D003850 6.6e-207 723.8 361 100.0
arahy.Tifrunner.gnm1.ann1.2Q8IWK Arachis hypogaea HOM05D002899 ORTHO05D003850 2.7e-91 339.7 343 57.7
arahy.Tifrunner.gnm1.ann1.T623PT Arachis hypogaea HOM05D002899 ORTHO05D003850 4.6e-91 339.0 490 46.7
arahy.Tifrunner.gnm1.ann1.S0X35P Arachis hypogaea HOM05D002899 ORTHO05D003850 8.4e-85 318.2 352 54.3
Lj1g0022689 Lotus japonicus HOM05D002899 ORTHO05D003850 3.2e-76 289.7 491 41.3
VMungo0464G0921 Vigna mungo HOM05D002899 ORTHO05D003850 7.9e-75 285.0 491 40.9
Phvul.004G082100 Phaseolus vulgaris HOM05D002899 ORTHO05D003850 3.9e-74 282.7 494 40.3
Glyma.02G073100 Glycine max HOM05D002899 ORTHO05D003850 8.7e-74 281.6 487 41.1
arahy.Tifrunner.gnm1.ann1.VWPR3S Arachis hypogaea HOM05D002899 ORTHO05D003850 9.6e-73 278.1 437 44.4
Glyma.16G154400 Glycine max HOM05D002899 ORTHO05D003850 9.6e-73 278.1 487 40.9
Ca_23166_v3 Cicer arietinum L. HOM05D002899 ORTHO05D003850 2.4e-71 273.5 491 40.3
Lalb_Chr16g0385381 Lupinus albus HOM05D002899 ORTHO05D003850 1.3e-66 257.7 496 37.9
Lalb_Chr09g0328871 Lupinus albus HOM05D002899 ORTHO05D003850 3.7e-64 249.6 493 37.7
Psat4g207720 Pisum sativum HOM05D002899 ORTHO05D003850 3.1e-63 246.5 487 37.0
Medtr8g010350 Medicago truncatula HOM05D002899 ORTHO05D003850 1.0e-61 241.5 490 36.3
TPR.G2005 Trifolium pratense HOM05D002899 ORTHO05D003850 1.9e-60 237.3 486 35.8
Sed0003802 Sechium edule HOM05D002899 ORTHO05D003850 2.3e-58 230.3 494 34.6
Sed0007587 Sechium edule HOM05D002899 ORTHO05D003850 3.9e-58 229.6 492 33.9
ClCG02G007900 Citrullus lanatus HOM05D002899 ORTHO05D003850 6.7e-58 228.8 494 34.4
Eucgr.G00845 Eucalyptus grandis HOM05D002899 ORTHO05D003850 1.5e-57 227.6 494 34.4
MELO3C024757.2 Cucumis melo HOM05D002899 ORTHO05D003850 7.4e-57 225.3 494 34.0
CsaV3_2G035840 Cucumis sativus L. HOM05D002899 ORTHO05D003850 9.0e-55 218.4 494 33.2
TPR.G9789 Trifolium pratense HOM05D002899 ORTHO05D003850 1.7e-53 214.2 444 35.4
GSVIVG01024262001 Vitis vinifera HOM05D002899 ORTHO05D003850 2.9e-53 213.4 467 34.9
TPR.G29541 Trifolium pratense HOM05D002899 ORTHO05D003850 1.4e-52 211.1 428 36.2
Sabra13G0065200 Salix brachista HOM05D002899 ORTHO05D003850 1.2e-51 208.0 495 30.7
Manes.09G130600 Manihot esculenta HOM05D002899 ORTHO05D003850 3.6e-51 206.5 494 31.8
Potri.013G076000 Populus trichocarpa HOM05D002899 ORTHO05D003850 3.6e-51 206.5 495 31.3
TPR.G6614 Trifolium pratense HOM05D002899 ORTHO05D003850 3.6e-51 206.5 468 34.4
Thecc.05G227100 Theobroma cacao HOM05D002899 ORTHO05D003850 1.8e-50 204.1 492 32.3
Cfa016110 Carpinus fangiana HOM05D002899 ORTHO05D003850 5.1e-50 202.6 495 34.7
Potri.019G043200 Populus trichocarpa HOM05D002899 ORTHO05D003850 6.7e-50 202.2 489 32.5
Duzib128G1532 Durio zibethinus HOM05D002899 ORTHO05D003850 8.7e-50 201.8 492 31.9
RcHm_v2.0_Chr7g0218481 Rosa chinensis HOM05D002899 ORTHO05D003850 1.5e-49 201.1 488 34.0
CiPaw.05G210800 Carya illinoinensis HOM05D002899 ORTHO05D003850 2.5e-49 200.3 493 33.7
Cpa.g.sc43.153 Carica papaya HOM05D002899 ORTHO05D003850 3.3e-49 199.9 328 40.2
MD08G1250100 Malus domestica HOM05D002899 ORTHO05D003850 4.3e-49 199.5 493 33.3
CSS0044416 Camellia sinensis var. sinensis HOM05D002899 ORTHO05D003850 1.3e-48 198.0 489 32.7
FvH4_5g27320 Fragaria vesca HOM05D002899 ORTHO05D003850 1.6e-48 197.6 488 33.2
FAN18G3509 Fragaria x ananassa HOM05D002899 ORTHO05D003850 1.6e-48 197.6 488 33.2
MD15G1445100 Malus domestica HOM05D002899 ORTHO05D003850 1.6e-48 197.6 493 33.5
FAN08G1317 Fragaria x ananassa HOM05D002899 ORTHO05D003850 2.2e-48 197.2 493 33.5
Prupe.5G048700 Prunus persica HOM05D002899 ORTHO05D003850 4.8e-48 196.1 488 34.2
Lj5P331T27 Lonicera japonica HOM05D002899 ORTHO05D003850 6.3e-48 195.7 493 33.7
Sabra19G0053900 Salix brachista HOM05D002899 ORTHO05D003850 6.3e-48 195.7 484 30.8
Atru.chr12.1814 Acer truncatum HOM05D002899 ORTHO05D003850 8.2e-48 195.3 495 32.9
PGR142G0302 Punica granatum HOM05D002899 ORTHO05D003850 8.2e-48 195.3 490 33.1
Oeu028990.1 Olea europaea HOM05D002899 ORTHO05D003850 1.8e-47 194.1 490 32.2
Prupe.1G587200 Prunus persica HOM05D002899 ORTHO05D003850 2.4e-47 193.7 488 34.0
Oeu027900.2 Olea europaea HOM05D002899 ORTHO05D003850 3.1e-47 193.4 450 33.3
Sopen10g001950 Solanum pennellii HOM05D002899 ORTHO05D003850 3.1e-47 193.4 490 32.2
PGSC0003DMG400014409 Solanum tuberosum HOM05D002899 ORTHO05D003850 3.1e-47 193.4 490 32.2
Lju926C12T4 Lonicera japonica HOM05D002899 ORTHO05D003850 5.3e-47 192.6 495 32.5
Solyc10g005990.4 Solanum lycopersicum HOM05D002899 ORTHO05D003850 6.9e-47 192.2 492 32.1
Gohir.D11G234700 Gossypium hirsutum HOM05D002899 ORTHO05D003850 7.7e-46 188.7 491 31.8
Atru.chr6.914 Acer truncatum HOM05D002899 ORTHO05D003850 1.3e-45 188.0 495 31.3
Lj9C24T10 Lonicera japonica HOM05D002899 ORTHO05D003850 1.3e-45 188.0 492 32.9
TPR.G27642 Trifolium pratense HOM05D002899 ORTHO05D003850 1.3e-45 188.0 147 66.7
Gorai.007G247300 Gossypium raimondii HOM05D002899 ORTHO05D003850 2.2e-45 187.2 491 31.8
Peaxi162Scf01026g00001 Petunia axillaris HOM05D002899 ORTHO05D003850 2.2e-45 187.2 493 32.7
COL.COLO4_33467 Corchorus olitorius HOM05D002899 ORTHO05D003850 2.9e-45 186.8 483 31.7
SGA_v2.0_scaffold39G15236 Striga asiatica HOM05D002899 ORTHO05D003850 5.0e-45 186.0 481 31.0
Gohir.A11G221200 Gossypium hirsutum HOM05D002899 ORTHO05D003850 2.5e-44 183.7 491 31.4
TWI38G1169 Tripterygium wilfordii HOM05D002899 ORTHO05D003850 5.5e-44 182.6 495 31.3
Lj9P219T21 Lonicera japonica HOM05D002899 ORTHO05D003850 9.4e-44 181.8 471 32.5
SHI02598 Sapria himalayana HOM05D002899 ORTHO05D003850 1.2e-43 181.4 485 31.3
CAN.G492.37 Capsicum annuum HOM05D002899 ORTHO05D003850 1.6e-43 181.0 493 31.2
Hma1.2p1_1059F.1_g253030 Hydrangea macrophylla HOM05D002899 ORTHO05D003850 2.7e-43 180.3 492 31.1
Actinidia08787 Actinidia chinensis HOM05D002899 ORTHO05D003850 7.9e-43 178.7 488 32.2
Nn3g21896 Nelumbo nucifera HOM05D002899 ORTHO05D003850 7.9e-43 178.7 490 31.8
Migut.F00929 Erythranthe guttata HOM05D002899 ORTHO05D003850 1.4e-42 177.9 490 30.8
Cc05_g11170 Coffea canephora HOM05D002899 ORTHO05D003850 3.9e-42 176.4 486 30.9
DCAR_022992 Daucus carota HOM05D002899 ORTHO05D003850 6.7e-42 175.6 492 31.1
PSO339G6595 Papaver somniferum HOM05D002899 ORTHO05D003850 1.5e-41 174.5 497 30.0
Medtr7g070290 Medicago truncatula HOM05D002899 ORTHO05D003850 4.4e-41 172.9 477 32.5
PSO384G0661 Papaver somniferum HOM05D002899 ORTHO05D003850 4.4e-41 172.9 497 30.0
MSTRG.22435 Avicennia marina HOM05D002899 ORTHO05D003850 2.8e-40 170.2 480 30.8
Ciclev10030682m.g Citrus clementina HOM05D002899 ORTHO05D003850 2.8e-40 170.2 495 29.9
MSTRG.8559 Avicennia marina HOM05D002899 ORTHO05D003850 8.2e-40 168.7 474 29.7
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 9.1e-39 165.2 144 63.2
TAR375G0529 Trochodendron aralioides HOM05D002899 ORTHO05D003850 4.5e-38 162.9 143 60.1
Aqoxy2G00924 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 7.7e-38 162.2 490 29.4
Nitab4.5_0009225g0010 Nicotiana tabacum HOM05D002899 ORTHO05D003850 1.3e-37 161.4 143 60.1
Rhsim06G0232100 Rhododendron simsii HOM05D002899 ORTHO05D003850 1.3e-37 161.4 143 61.5
TAR633G0361 Trochodendron aralioides HOM05D002899 ORTHO05D003850 2.5e-36 157.1 143 58.7
QL03p062749 Quercus lobata HOM05D002899 ORTHO05D003850 4.2e-36 156.4 490 30.6
Lsat_1_v5_gn_9_37500 Lactuca sativa HOM05D002899 ORTHO05D003850 5.5e-36 156.0 489 29.9
MBI02_g25679_MAGBIO Magnolia biondii HOM05D002899 ORTHO05D003850 7.2e-36 155.6 141 60.3
THA.LOC104805726 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 2.1e-35 154.1 483 30.6
THA.LOC104823791 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 7.9e-35 152.1 485 29.9
Sc06g0010130 Simmondsia chinensis HOM05D002899 ORTHO05D003850 1.0e-34 151.8 483 29.6
Lj5P331T31 Lonicera japonica HOM05D002899 ORTHO05D003850 3.0e-34 150.2 135 60.7
Sc11g0002190 Simmondsia chinensis HOM05D002899 ORTHO05D003850 5.2e-34 149.4 483 29.2
unitig_21.g20691 Utricularia gibba HOM05D002899 ORTHO05D003850 1.5e-33 147.9 497 27.6
EL10Ac2g02592 Beta vulgaris HOM05D002899 ORTHO05D003850 5.7e-33 146.0 471 29.3
HanXRQChr15g0463941 Helianthus annuus HOM05D002899 ORTHO05D003850 9.7e-33 145.2 477 29.8
QL03p062784 Quercus lobata HOM05D002899 ORTHO05D003850 2.8e-32 143.7 348 32.2
AUR62030668 Chenopodium quinoa HOM05D002899 ORTHO05D003850 3.7e-32 143.3 144 54.2
Ah.12g063970 Amaranthus hybridus HOM05D002899 ORTHO05D003850 6.3e-32 142.5 477 28.3
Ah.12g064150 Amaranthus hybridus HOM05D002899 ORTHO05D003850 6.3e-32 142.5 477 28.3
ECA247G1085 Erigeron canadensis HOM05D002899 ORTHO05D003850 1.1e-31 141.7 494 29.1
Aa31LG11G5630 Aethionema arabicum HOM05D002899 ORTHO05D003850 1.4e-31 141.4 142 53.5
CDE05G1238 Ceratophyllum demersum HOM05D002899 ORTHO05D003850 1.4e-31 141.4 145 53.1
AUR62024879 Chenopodium quinoa HOM05D002899 ORTHO05D003850 3.1e-31 140.2 144 52.8
CARHR017600 Cardamine hirsuta HOM05D002899 ORTHO05D003850 5.3e-31 139.4 142 55.6
Aqoxy6G01663 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 7.0e-31 139.0 469 27.9
Rhsim03G0225400 Rhododendron simsii HOM05D002899 ORTHO05D003850 3.5e-30 136.7 477 28.5
AL1G29240 Arabidopsis lyrata HOM05D002899 ORTHO05D003850 4.5e-30 136.3 142 53.5
QL03p066723 Quercus lobata HOM05D002899 ORTHO05D003850 1.0e-29 135.2 372 31.2
Sp1g15190 Schrenkiella parvula HOM05D002899 ORTHO05D003850 1.7e-29 134.4 142 53.5
AT1G17070 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 2.9e-29 133.7 467 28.7
HanXRQChr10g0291501 Helianthus annuus HOM05D002899 ORTHO05D003850 8.5e-29 132.1 468 27.8
Carub.0001s1679 Capsella rubella HOM05D002899 ORTHO05D003850 1.1e-28 131.7 142 52.1
Thhalv10006789m.g Eutrema salsugineum HOM05D002899 ORTHO05D003850 3.2e-28 130.2 142 52.1
BcaC07g41394 Brassica carinata HOM05D002899 ORTHO05D003850 4.2e-28 129.8 142 51.4
BcaC07g41444 Brassica carinata HOM05D002899 ORTHO05D003850 5.5e-28 129.4 142 52.1
SEGI_23967 Sequoiadendron giganteum HOM05D002899 ORTHO05D003850 5.5e-28 129.4 502 26.1
C08p44090 Brassica napus HOM05D002899 ORTHO05D003850 9.4e-28 128.6 142 52.1
BolC8t51957H Brassica oleracea HOM05D002899 ORTHO05D003850 9.4e-28 128.6 142 52.1
BraA09t41433Z Brassica rapa HOM05D002899 ORTHO05D003850 9.4e-28 128.6 142 52.1
Lj9C25T5 Lonicera japonica HOM05D002899 ORTHO05D003850 9.4e-28 128.6 114 60.5
Lsat_1_v5_gn_9_37520 Lactuca sativa HOM05D002899 ORTHO05D003850 1.2e-27 128.3 468 27.6
A09p60630 Brassica napus HOM05D002899 ORTHO05D003850 1.6e-27 127.9 142 51.4
Dinv04697 Davidia involucrata HOM05D002899 ORTHO05D003850 3.6e-27 126.7 109 61.5
TAR633G2735 Trochodendron aralioides HOM05D002899 ORTHO05D003850 4.7e-27 126.3 114 59.6
ATR1098G071 Amborella trichopoda HOM05D002899 ORTHO05D003850 8.0e-27 125.6 150 44.7
Peaxi162Scf00017g01725 Petunia axillaris HOM05D002899 ORTHO05D003850 1.4e-26 124.8 448 28.6
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 3.0e-26 123.6 409 27.4
Gohir.D10G191600 Gossypium hirsutum HOM05D002899 ORTHO05D003850 3.0e-26 123.6 399 30.3
CDE02G0573 Ceratophyllum demersum HOM05D002899 ORTHO05D003850 8.8e-26 122.1 124 53.2
AUR62014872 Chenopodium quinoa HOM05D002899 ORTHO05D003850 8.8e-26 122.1 482 25.9
Gorai.011G214400 Gossypium raimondii HOM05D002899 ORTHO05D003850 2.6e-25 120.6 399 30.1
Sc09g0008530 Simmondsia chinensis HOM05D002899 ORTHO05D003850 1.3e-24 118.2 146 48.6
AL4G40710 Arabidopsis lyrata HOM05D002899 ORTHO05D003850 1.7e-24 117.9 144 49.3
Os12g0615800 Oryza sativa ssp. japonica HOM05D002899 ORTHO05D003850 2.8e-24 117.1 146 46.6
AT2G42330 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 8.2e-24 115.5 144 50.0
BcaC05g25671 Brassica carinata HOM05D002899 ORTHO05D003850 1.4e-23 114.8 138 49.3
HPP92_017275 Vanilla planifolia HOM05D002899 ORTHO05D003850 2.4e-23 114.0 125 51.2
Manes.09G098002 Manihot esculenta HOM05D002899 ORTHO05D003850 7.0e-23 112.5 90 63.3
C05p15450 Brassica napus HOM05D002899 ORTHO05D003850 9.1e-23 112.1 118 50.8
DCAR_011062 Daucus carota HOM05D002899 ORTHO05D003850 2.7e-22 110.5 103 57.3
Zm00001eb135930 Zea mays HOM05D002899 ORTHO05D003850 2.7e-22 110.5 146 44.5
Aqoxy1G02234 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 1.3e-21 108.2 134 50.7
CARHR137380 Cardamine hirsuta HOM05D002899 ORTHO05D003850 1.3e-21 108.2 146 45.2
Glyma.18G031932 Glycine max HOM05D002899 ORTHO05D018620 2.9e-21 107.1 58 84.5
Prupe.7G002000 Prunus persica HOM05D002899 ORTHO05D003850 2.9e-21 107.1 88 60.2
Aqoxy6G01674 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 1.5e-20 104.8 110 51.8
Glyma.18G031866 Glycine max HOM05D002899 ORTHO05D027421 3.2e-20 103.6 86 64.0
Ciclev10031700m.g Citrus clementina HOM05D002899 ORTHO05D003850 4.2e-20 103.2 139 46.0
Cc07_g20660 Coffea canephora HOM05D002899 ORTHO05D003850 4.2e-20 103.2 102 53.9
FAN04G0489 Fragaria x ananassa HOM05D002899 ORTHO05D003850 4.2e-20 103.2 148 43.9
BcaB02g06683 Brassica carinata HOM05D002899 ORTHO05D003850 6.1e-19 99.4 135 41.5
Dinv36250 Davidia involucrata HOM05D002899 ORTHO05D003850 1.4e-18 98.2 100 56.0
Mapoly0085s0035 Marchantia polymorpha HOM05D002899 ORTHO05D003850 8.8e-18 95.5 145 39.3
RcHm_v2.0_Chr6g0293801 Rosa chinensis HOM05D002899 ORTHO05D003850 1.2e-17 95.1 64 67.2
COL.COLO4_09508 Corchorus olitorius HOM05D002899 ORTHO05D003850 1.5e-17 94.7 138 39.9
FAN24G1302 Fragaria x ananassa HOM05D002899 ORTHO05D003850 1.5e-17 94.7 64 67.2
Mapoly0121s0014 Marchantia polymorpha HOM05D002899 ORTHO05D003850 3.4e-17 93.6 151 37.7
COL.COLO4_32217 Corchorus olitorius HOM05D002899 ORTHO05D003850 4.4e-17 93.2 77 57.1
Ciclev10018077m.g Citrus clementina HOM05D002899 ORTHO05D003850 8.3e-16 89.0 143 39.2
COL.COLO4_00251 Corchorus olitorius HOM05D002899 ORTHO05D003850 1.1e-15 88.6 128 39.8
Aqoxy1G02235 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 1.8e-15 87.8 94 52.1
SMO165G0034 Selaginella moellendorffii HOM05D002899 ORTHO05D003850 7.0e-15 85.9 145 38.6
A06p12980 Brassica napus HOM05D002899 ORTHO05D018620 2.0e-14 84.3 97 48.5
TPR.G4447 Trifolium pratense HOM05D002899 ORTHO05D018620 3.5e-14 83.6 69 62.3
Ciclev10015230m.g Citrus clementina HOM05D002899 ORTHO05D003850 4.5e-14 83.2 123 43.1
AUR62031081 Chenopodium quinoa HOM05D002899 ORTHO05D003850 5.9e-14 82.8 145 39.3
Pp3c22_1760 Physcomitrium patens HOM05D002899 ORTHO05D003850 1.7e-13 81.3 147 35.4
AUR62031080 Chenopodium quinoa HOM05D002899 ORTHO05D003850 2.9e-13 80.5 124 41.9
Pp3c19_6430 Physcomitrium patens HOM05D002899 ORTHO05D003850 6.5e-13 79.3 147 34.7
COL.COLO4_24093 Corchorus olitorius HOM05D002899 ORTHO05D003850 1.5e-12 78.2 100 44.0
Sc09g0008570 Simmondsia chinensis HOM05D002899 ORTHO05D003850 1.5e-12 78.2 89 48.3
Sc09g0008540 Simmondsia chinensis HOM05D002899 ORTHO05D003850 9.5e-12 75.5 75 52.0
FAN27G1849 Fragaria x ananassa HOM05D002899 ORTHO05D003850 1.2e-09 68.6 64 56.2
CBR_g50354 Chara braunii HOM05D002899 ORTHO05D003850 9.8e-09 65.5 143 30.8
BolC5t30253H Brassica oleracea HOM05D002899 ORTHO05D003850 1.3e-08 65.1 61 49.2
COL.COLO4_09043 Corchorus olitorius HOM05D002899 ORTHO05D003850 8.3e-08 62.4 232 28.4
Cre07.g325713 Chlamydomonas reinhardtii HOM05D002899 ORTHO05D003850 1.1e-07 62.0 76 40.8
MCO06G176 Micromonas commoda HOM05D002899 ORTHO05D003850 1.8e-07 61.2 74 39.2
BcaC01g05295 Brassica carinata HOM05D002899 ORTHO05D018620 1.6e-06 58.2 74 39.2
Zm00001eb426490 Zea mays HOM05D002899 ORTHO05D003850 2.0e-06 57.8 113 36.3
AagrBONN_evm.TU.Sc2ySwM_340.341 Anthoceros agrestis HOM05D002899 ORTHO05D003850 2.7e-06 57.4 100 38.0
BcaC01g05306 Brassica carinata HOM05D002899 ORTHO05D018620 7.8e-06 55.8 112 31.2
Pp3c22_1740 Physcomitrium patens HOM05D002899 ORTHO05D018620 7.8e-06 55.8 64 40.6


User provided reference genes

Program Settings