Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb432010 Zea mays HOM05D004135 ORTHO05D005558 2.8e-163 578.6 295 100.0
Os04g0644700 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 1.6e-134 483.0 295 82.7
THA.LOC104798582 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 9.8e-116 420.6 295 71.2
Manes.06G053900 Manihot esculenta HOM05D004135 ORTHO05D005558 1.7e-115 419.9 293 72.7
THA.LOC104814339 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 1.4e-114 416.8 295 70.8
Eucgr.D01026 Eucalyptus grandis HOM05D004135 ORTHO05D005558 7.0e-114 414.5 292 70.5
Aqoxy6G00202 Aquilegia oxysepala HOM05D004135 ORTHO05D005558 5.9e-113 411.4 293 69.6
MELO3C007042.2 Cucumis melo HOM05D004135 ORTHO05D005558 3.8e-112 408.7 293 69.6
Nn7g38349 Nelumbo nucifera HOM05D004135 ORTHO05D005558 3.8e-112 408.7 293 71.0
Ciclev10016127m.g Citrus clementina HOM05D004135 ORTHO05D005558 8.6e-112 407.5 294 71.1
Cpa.g.sc285.5 Carica papaya HOM05D004135 ORTHO05D005558 1.1e-111 407.1 294 70.7
Gohir.A05G111900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.1e-111 407.1 295 70.5
Nitab4.5_0012414g0010 Nicotiana tabacum HOM05D004135 ORTHO05D005558 1.9e-111 406.4 294 70.7
Nitab4.5_0001219g0030 Nicotiana tabacum HOM05D004135 ORTHO05D005558 2.5e-111 406.0 294 70.7
Aa31LG6G11870 Aethionema arabicum HOM05D004135 ORTHO05D005558 3.3e-111 405.6 295 68.8
Peaxi162Scf00195g00518 Petunia axillaris HOM05D004135 ORTHO05D005558 3.3e-111 405.6 293 70.3
Sed0006315 Sechium edule HOM05D004135 ORTHO05D005558 4.3e-111 405.2 293 68.6
TAR629G2923 Trochodendron aralioides HOM05D004135 ORTHO05D005558 4.3e-111 405.2 293 69.6
ClCG01G025420 Citrullus lanatus HOM05D004135 ORTHO05D005558 5.6e-111 404.8 293 68.9
CsaV3_6G052670 Cucumis sativus L. HOM05D004135 ORTHO05D005558 5.6e-111 404.8 293 68.9
Cfa000762 Carpinus fangiana HOM05D004135 ORTHO05D005558 7.3e-111 404.4 295 69.5
Sed0027064 Sechium edule HOM05D004135 ORTHO05D005558 9.5e-111 404.1 293 68.6
CAN.G675.30 Capsicum annuum HOM05D004135 ORTHO05D005558 1.2e-110 403.7 293 70.6
Nn4g26687 Nelumbo nucifera HOM05D004135 ORTHO05D005558 1.2e-110 403.7 293 70.0
Oeu060331.1 Olea europaea HOM05D004135 ORTHO05D005558 1.2e-110 403.7 294 70.1
Potri.011G155800 Populus trichocarpa HOM05D004135 ORTHO05D005558 1.2e-110 403.7 295 69.5
QL05p064858 Quercus lobata HOM05D004135 ORTHO05D005558 1.2e-110 403.7 294 69.4
DCAR_003828 Daucus carota HOM05D004135 ORTHO05D005558 2.1e-110 402.9 295 69.2
Prupe.4G101800 Prunus persica HOM05D004135 ORTHO05D005558 2.1e-110 402.9 295 69.5
PGR083G2348 Punica granatum HOM05D004135 ORTHO05D005558 2.8e-110 402.5 295 68.8
CiPaw.09G148400 Carya illinoinensis HOM05D004135 ORTHO05D005558 3.6e-110 402.1 295 68.8
AL1G44690 Arabidopsis lyrata HOM05D004135 ORTHO05D005558 8.0e-110 401.0 293 68.6
Manes.14G126900 Manihot esculenta HOM05D004135 ORTHO05D005558 8.0e-110 401.0 293 70.0
SalBow8G1631 Salvia bowleyana HOM05D004135 ORTHO05D005558 8.0e-110 401.0 291 71.1
SalBow8G2729 Salvia bowleyana HOM05D004135 ORTHO05D005558 8.0e-110 401.0 291 71.1
BolC3t14655H Brassica oleracea HOM05D004135 ORTHO05D005558 1.4e-109 400.2 295 67.5
PGSC0003DMG400031401 Solanum tuberosum HOM05D004135 ORTHO05D005558 1.4e-109 400.2 294 69.4
Gorai.005G119100 Gossypium raimondii HOM05D004135 ORTHO05D005558 1.8e-109 399.8 295 68.8
TAR627G0684 Trochodendron aralioides HOM05D004135 ORTHO05D005558 2.3e-109 399.4 293 68.3
Sopen02g009560 Solanum pennellii HOM05D004135 ORTHO05D005558 3.1e-109 399.1 294 69.0
DCAR_007807 Daucus carota HOM05D004135 ORTHO05D005558 5.2e-109 398.3 295 68.1
Gohir.D02G104900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 5.2e-109 398.3 295 68.5
HanXRQChr11g0340901 Helianthus annuus HOM05D004135 ORTHO05D005558 5.2e-109 398.3 293 67.9
BcaC01g05751 Brassica carinata HOM05D004135 ORTHO05D005558 6.8e-109 397.9 295 67.1
C03p22580 Brassica napus HOM05D004135 ORTHO05D005558 6.8e-109 397.9 295 67.1
Solyc02g069585.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 8.9e-109 397.5 293 68.9
AT1G30630 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 1.2e-108 397.1 293 68.6
Aa31LG10G6460 Aethionema arabicum HOM05D004135 ORTHO05D005558 1.5e-108 396.7 295 67.5
MSTRG.16319 Avicennia marina HOM05D004135 ORTHO05D005558 1.5e-108 396.7 294 69.0
MSTRG.7569 Avicennia marina HOM05D004135 ORTHO05D005558 1.5e-108 396.7 295 68.1
PSO541G2415 Papaver somniferum HOM05D004135 ORTHO05D005558 1.5e-108 396.7 293 68.6
Sopen02g018720 Solanum pennellii HOM05D004135 ORTHO05D005558 1.5e-108 396.7 293 68.9
BcaC05g27087 Brassica carinata HOM05D004135 ORTHO05D005558 2.0e-108 396.4 295 67.5
C05p29690 Brassica napus HOM05D004135 ORTHO05D005558 2.0e-108 396.4 295 67.5
BolC5t31698H Brassica oleracea HOM05D004135 ORTHO05D005558 2.0e-108 396.4 295 67.5
Gohir.A02G088700 Gossypium hirsutum HOM05D004135 ORTHO05D005558 2.0e-108 396.4 294 69.0
Solyc02g030243.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 2.0e-108 396.4 294 68.7
GSVIVG01021747001 Vitis vinifera HOM05D004135 ORTHO05D005558 2.0e-108 396.4 293 68.9
BraA04t18166Z Brassica rapa HOM05D004135 ORTHO05D005558 2.6e-108 396.0 295 67.5
A09p35780 Brassica napus HOM05D004135 ORTHO05D005558 3.4e-108 395.6 295 67.5
BraA03t11189Z Brassica rapa HOM05D004135 ORTHO05D005558 3.4e-108 395.6 295 66.4
BraA09t39101Z Brassica rapa HOM05D004135 ORTHO05D005558 3.4e-108 395.6 295 67.5
BolC4t27879H Brassica oleracea HOM05D004135 ORTHO05D005558 5.8e-108 394.8 295 67.5
Hma1.2p1_0300F.1_g117980 Hydrangea macrophylla HOM05D004135 ORTHO05D005558 5.8e-108 394.8 293 68.3
Lsat_1_v5_gn_1_86700 Lactuca sativa HOM05D004135 ORTHO05D005558 5.8e-108 394.8 293 67.2
Carub.0001s2889 Capsella rubella HOM05D004135 ORTHO05D005558 7.5e-108 394.4 293 67.9
Migut.M01941 Erythranthe guttata HOM05D004135 ORTHO05D005558 7.5e-108 394.4 294 69.4
BcaC02g07752 Brassica carinata HOM05D004135 ORTHO05D005558 9.8e-108 394.0 295 67.1
CANSAT35G0477 Cannabis sativa HOM05D004135 ORTHO05D005558 9.8e-108 394.0 294 68.4
CARHR030110 Cardamine hirsuta HOM05D004135 ORTHO05D005558 9.8e-108 394.0 295 67.5
PGSC0003DMG400021137 Solanum tuberosum HOM05D004135 ORTHO05D005558 9.8e-108 394.0 293 68.6
BcaB07g32703 Brassica carinata HOM05D004135 ORTHO05D005558 1.3e-107 393.7 295 66.8
A03p19330 Brassica napus HOM05D004135 ORTHO05D005558 1.3e-107 393.7 295 66.4
Thhalv10017028m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 1.3e-107 393.7 295 67.5
HPP92_013200 Vanilla planifolia HOM05D004135 ORTHO05D005558 1.3e-107 393.7 294 67.7
PSO675G0864 Papaver somniferum HOM05D004135 ORTHO05D005558 1.7e-107 393.3 293 67.9
C04p64030 Brassica napus HOM05D004135 ORTHO05D005558 2.2e-107 392.9 295 66.8
BcaB06g28829 Brassica carinata HOM05D004135 ORTHO05D005558 2.9e-107 392.5 295 67.5
A04p26610 Brassica napus HOM05D004135 ORTHO05D005558 2.9e-107 392.5 295 66.8
Sp1g26530 Schrenkiella parvula HOM05D004135 ORTHO05D005558 2.9e-107 392.5 295 67.1
CDE02G1412 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 6.4e-107 391.3 293 67.2
HanXRQChr04g0119201 Helianthus annuus HOM05D004135 ORTHO05D005558 6.4e-107 391.3 295 67.5
Lj2A337T32 Lonicera japonica HOM05D004135 ORTHO05D005558 6.4e-107 391.3 293 68.6
Os04g0612600 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 6.4e-107 391.3 293 66.6
Sp4g17120 Schrenkiella parvula HOM05D004135 ORTHO05D005558 1.1e-106 390.6 295 66.8
EL10Ac8g19524 Beta vulgaris HOM05D004135 ORTHO05D005558 1.4e-106 390.2 293 67.6
Lj1A1156T44 Lonicera japonica HOM05D004135 ORTHO05D005558 2.4e-106 389.4 305 66.9
Sc24g0002580 Simmondsia chinensis HOM05D004135 ORTHO05D005558 2.4e-106 389.4 293 67.6
ATR0763G246 Amborella trichopoda HOM05D004135 ORTHO05D005558 3.2e-106 389.0 293 65.9
Thhalv10008349m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 4.1e-106 388.7 295 66.8
AT2G34840 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 5.4e-106 388.3 295 65.4
AUR62027344 Chenopodium quinoa HOM05D004135 ORTHO05D005558 1.2e-105 387.1 293 65.9
Gohir.D05G112400 Gossypium hirsutum HOM05D004135 ORTHO05D005558 3.5e-105 385.6 295 67.1
Duzib160G0522 Durio zibethinus HOM05D004135 ORTHO05D005558 4.6e-105 385.2 295 67.5
Duzib235G1539 Durio zibethinus HOM05D004135 ORTHO05D005558 4.6e-105 385.2 295 67.5
Thecc.06G007700 Theobroma cacao HOM05D004135 ORTHO05D005558 4.6e-105 385.2 294 68.0
unitig_748.g7354 Utricularia gibba HOM05D004135 ORTHO05D005558 6.0e-105 384.8 294 67.0
Zm00001eb430730 Zea mays HOM05D004135 ORTHO05D005558 6.0e-105 384.8 293 65.5
Lsat_1_v5_gn_7_31180 Lactuca sativa HOM05D004135 ORTHO05D005558 1.0e-104 384.0 295 66.4
Carub.0004s1652 Capsella rubella HOM05D004135 ORTHO05D005558 1.3e-104 383.6 295 64.7
AUR62042515 Chenopodium quinoa HOM05D004135 ORTHO05D005558 1.3e-104 383.6 293 65.5
SGA_v2.0_scaffold298G47640 Striga asiatica HOM05D004135 ORTHO05D005558 1.7e-104 383.3 328 61.9
arahy.Tifrunner.gnm1.ann1.CJHC7K Arachis hypogaea HOM05D004135 ORTHO05D005558 2.3e-104 382.9 297 64.0
Gorai.009G116600 Gossypium raimondii HOM05D004135 ORTHO05D005558 2.3e-104 382.9 295 67.1
Lj6g0020585 Lotus japonicus HOM05D004135 ORTHO05D005558 3.9e-104 382.1 293 64.2
Ah.11g045310 Amaranthus hybridus HOM05D004135 ORTHO05D005558 5.0e-104 381.7 293 64.5
vmacro03457 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 1.9e-103 379.8 308 64.6
Medtr2g032130 Medicago truncatula HOM05D004135 ORTHO05D005558 7.3e-103 377.9 293 62.5
Ca_00931_v3 Cicer arietinum L. HOM05D004135 ORTHO05D005558 9.5e-103 377.5 293 63.5
TWI81G0788 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 2.1e-102 376.3 294 68.0
CSS0034299 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D005558 8.0e-102 374.4 311 62.4
MBI18_g26296_MAGBIO Magnolia biondii HOM05D004135 ORTHO05D005558 1.1e-101 374.0 313 62.6
TWI15G0841 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 4.0e-101 372.1 296 66.9
TWI38G0133 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 4.0e-101 372.1 296 67.6
Phvul.006G122500 Phaseolus vulgaris HOM05D004135 ORTHO05D005558 6.8e-101 371.3 292 63.4
Glyma.15G136100 Glycine max HOM05D004135 ORTHO05D005558 2.0e-100 369.8 292 62.3
Sabra11G0144000 Salix brachista HOM05D004135 ORTHO05D005558 4.4e-100 368.6 310 62.6
Lalb_Chr20g0120301 Lupinus albus HOM05D004135 ORTHO05D005558 9.8e-100 367.5 293 62.1
RcHm_v2.0_Chr5g0018341 Rosa chinensis HOM05D004135 ORTHO05D005558 1.3e-99 367.1 296 64.9
Glyma.09G030400 Glycine max HOM05D004135 ORTHO05D005558 5.4e-98 361.7 292 61.0
MD05G1263700 Malus domestica HOM05D004135 ORTHO05D005558 9.2e-98 360.9 291 64.3
FvH4_3g11400 Fragaria vesca HOM05D004135 ORTHO05D005558 3.5e-97 359.0 295 63.1
ECA236G2122 Erigeron canadensis HOM05D000091 ORTHO05D001510 6.0e-97 358.2 278 66.2
FAN25G0882 Fragaria x ananassa HOM05D004135 ORTHO05D005558 1.5e-95 353.6 297 62.6
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 4.3e-95 352.1 297 62.0
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 7.3e-95 351.3 297 62.0
VMungo0540G1545 Vigna mungo HOM05D004135 ORTHO05D005558 2.8e-94 349.4 292 59.9
Atru.chr6.3256 Acer truncatum HOM05D004135 ORTHO05D005558 6.2e-94 348.2 295 62.4
Actinidia32352 Actinidia chinensis HOM05D004135 ORTHO05D005558 1.4e-93 347.1 295 63.1
Pp3c27_2170 Physcomitrium patens HOM05D004135 ORTHO05D005558 8.9e-93 344.4 293 59.4
Mapoly0002s0056 Marchantia polymorpha HOM05D004135 ORTHO05D005558 1.2e-92 344.0 291 58.8
MD10G1241400 Malus domestica HOM05D004135 ORTHO05D005558 2.6e-92 342.8 289 61.2
Pp3c6_18240 Physcomitrium patens HOM05D004135 ORTHO05D005558 2.6e-92 342.8 293 59.0
Pp3c16_16890 Physcomitrium patens HOM05D004135 ORTHO05D005558 4.4e-92 342.0 293 58.4
vmacro10993 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 4.4e-92 342.0 451 45.9
Actinidia31378 Actinidia chinensis HOM05D004135 ORTHO05D005558 7.5e-92 341.3 264 66.7
TPR.G8030 Trifolium pratense HOM05D004135 ORTHO05D005558 1.7e-91 340.1 258 63.2
Psat1g164080 Pisum sativum HOM05D004135 ORTHO05D005558 2.2e-91 339.7 259 64.5
Haze_08569 Corylus avellana HOM05D004135 ORTHO05D005558 2.4e-90 336.3 312 58.3
Oeu052702.4 Olea europaea HOM05D004135 ORTHO05D005558 5.4e-90 335.1 305 59.0
Cc09_g07090 Coffea canephora HOM05D004135 ORTHO05D005558 4.0e-85 318.9 236 66.9
Dinv04216 Davidia involucrata HOM05D004135 ORTHO05D005558 1.2e-84 317.4 235 67.7
arahy.Tifrunner.gnm1.ann1.NB4WMM Arachis hypogaea HOM05D004135 ORTHO05D005558 2.2e-83 313.2 235 65.1
AagrBONN_evm.TU.Sc2ySwM_117.3836 Anthoceros agrestis HOM05D004135 ORTHO05D005558 7.1e-82 308.1 293 55.3
Zm00001eb274480 Zea mays HOM05D004135 ORTHO05D005558 7.3e-79 298.1 155 96.1
SMO358G0532 Selaginella moellendorffii HOM05D004135 ORTHO05D005558 6.2e-78 295.0 288 53.1
Rhsim02G0165800 Rhododendron simsii HOM05D004135 ORTHO05D005558 7.6e-76 288.1 301 54.5
Actinidia25200 Actinidia chinensis HOM05D004135 ORTHO05D005558 4.3e-71 272.3 204 66.2
CBR_g34668 Chara braunii HOM05D004135 ORTHO05D005558 5.6e-71 271.9 289 49.8
Cre13.g592450 Chlamydomonas reinhardtii HOM05D004135 ORTHO05D005558 9.0e-69 264.6 290 49.7
PRCOL_00001868 Prasinoderma coloniale HOM05D004135 ORTHO05D005558 6.0e-65 251.9 288 46.2
MCO11G236 Micromonas commoda HOM05D004135 ORTHO05D005558 1.4e-61 240.7 284 45.8
COL.COLO4_26892 Corchorus olitorius HOM05D004135 ORTHO05D005558 1.3e-59 234.2 261 51.3
CDE06G2577 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 2.6e-52 209.9 167 64.1
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 1.7e-43 180.6 150 64.0
Thecc.06G007200 Theobroma cacao HOM05D004135 ORTHO05D005558 1.7e-43 180.6 113 77.0
COL.COLO4_29004 Corchorus olitorius HOM05D004135 ORTHO05D005558 1.1e-39 167.9 156 57.7
Zm00001eb180170 Zea mays HOM05D004135 ORTHO05D444922 5.1e-32 142.5 75 97.3
Zm00001eb135420 Zea mays HOM05D004135 ORTHO05D443401 6.3e-22 109.0 93 59.1
Cfa026260 Carpinus fangiana HOM05D004135 ORTHO05D125562 7.2e-18 95.5 308 28.2
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 1.6e-17 94.4 83 61.4
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 1.4e-16 91.3 83 60.2
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 3.4e-15 86.7 83 57.8
AUR62011277 Chenopodium quinoa HOM05D004135 ORTHO05D138132 4.4e-15 86.3 63 69.8
CSS0024113 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D028393 9.7e-15 85.1 57 73.7
SGA_v2.0_scaffold147G36337 Striga asiatica HOM05D004135 ORTHO05D401852 1.7e-14 84.3 149 38.9
RcHm_v2.0_Chr6g0289631 Rosa chinensis HOM05D004135 ORTHO05D008146 2.8e-14 83.6 61 63.9
Zm00001eb388920 Zea mays HOM05D000787 ORTHO05D001019 3.1e-13 80.1 84 54.8
SGA_v2.0_scaffold147G36336 Striga asiatica HOM05D004135 ORTHO05D000001 1.2e-12 78.2 138 37.0
RcHm_v2.0_Chr6g0289621 Rosa chinensis HOM05D004135 ORTHO05D028393 1.6e-12 77.8 70 57.1
RcHm_v2.0_Chr0c29g0501101 Rosa chinensis HOM05D004135 ORTHO05D028393 1.9e-10 70.9 56 60.7
RcHm_v2.0_Chr1g0337861 Rosa chinensis HOM05D004135 ORTHO05D028393 1.9e-10 70.9 56 60.7
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 3.4e-07 60.1 57 54.4
Zm00001eb373640 Zea mays HOM05D004135 ORTHO05D444823 3.7e-06 56.6 45 66.7


User provided reference genes

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