Gene: AT2G34840

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G34840
  • Transcript Identifier AT2G34840.1
  • Gene Type Coding gene
  • Location Chr2 : 14702603-14704165 : positive

Gene Family Information

  • ID HOM05D004135
  • #Genes/#Species 171/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G34840.1
  • uniprot O64748

Descriptions

  • Description Coatomer epsilon subunit
  • Computational description Coatomer epsilon subunit; FUNCTIONS IN: protein transporter activity, structural molecule activity, binding; INVOLVED IN: retrograde vesicle-mediated transport, Golgi to ER; LOCATED IN: COPI vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Coatomer, epsilon subunit (InterPro:IPR006822); BEST Arabidopsis thaliana protein match is: Coatomer epsilon subunit (TAIR:AT1G30630.1); Has 446 Blast hits to 446 proteins in 187 species: Archae - 0; Bacteria - 10; Metazoa - 175; Fungi - 107; Plants - 92; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006890
IEA
Gene Ontologyretrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006890
IEA
InterProretrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0016192
IEA
GOA Databasevesicle-mediated transport
GO:0015031
IEA
GOA Databaseprotein transport
GO:0006888
IBA
Gene Ontologyendoplasmic reticulum to Golgi vesicle-mediated transport1
GO:0006891
IBA
Gene Ontologyintra-Golgi vesicle-mediated transport1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0005198
IEA
Gene Ontologystructural molecule activity
GO:0005198
IEA
InterProstructural molecule activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
GOA Databasecytosol
GO:0016020
IEA
GOA Databasemembrane
GO:0031410
IEA
GOA Databasecytoplasmic vesicle
GO:0005794
IEA
GOA DatabaseGolgi apparatus
GO:0005737
IEA
GOA Databasecytoplasm
GO:0000139
IEA
GOA DatabaseGolgi membrane
GO:0030663
IEA
GOA DatabaseCOPI-coated vesicle membrane
GO:0030126
IBA
Gene OntologyCOPI vesicle coat1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006822 Coatomer, epsilon subunit
IPR011990 Tetratricopeptide-like helical domain superfamily
Mapman id Description
22.2.1.1.3 Vesicle trafficking.Golgi-ER retrograde trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.subunit epsilon