Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb413390 Zea mays HOM05D006642 ORTHO05D008856 3.5e-194 682.2 571 100.0
Os08g0191900 Oryza sativa ssp. japonica HOM05D006642 ORTHO05D008856 4.1e-134 482.6 611 75.0
HPP92_011054 Vanilla planifolia HOM05D006642 ORTHO05D008856 4.0e-105 386.3 332 77.1
MBI02_g40097_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D008856 2.4e-102 377.1 331 76.1
TAR624G0481 Trochodendron aralioides HOM05D006642 ORTHO05D008856 4.1e-102 376.3 332 75.9
Aqoxy5G04293 Aquilegia oxysepala HOM05D006642 ORTHO05D008856 9.1e-102 375.2 327 76.8
Nn4g26621 Nelumbo nucifera HOM05D006642 ORTHO05D008856 2.2e-100 370.5 331 74.9
CDE05G1065 Ceratophyllum demersum HOM05D006642 ORTHO05D008856 2.1e-98 364.0 335 74.9
Hma1.2p1_0073F.1_g038540 Hydrangea macrophylla HOM05D006642 ORTHO05D008856 3.6e-98 363.2 303 77.9
Sed0004539 Sechium edule HOM05D006642 ORTHO05D008856 1.2e-96 358.2 311 74.9
Ciclev10014674m.g Citrus clementina HOM05D006642 ORTHO05D008856 9.8e-96 355.1 326 71.5
CSS0001521 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 1.3e-95 354.8 324 72.5
CSS0049788 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 1.3e-95 354.8 324 72.5
arahy.Tifrunner.gnm1.ann1.T7AVMG Arachis hypogaea HOM05D006642 ORTHO05D008856 2.8e-95 353.6 304 75.7
Nitab4.5_0001843g0110 Nicotiana tabacum HOM05D006642 ORTHO05D008856 3.7e-95 353.2 306 75.8
MSTRG.6613 Avicennia marina HOM05D006642 ORTHO05D008856 8.3e-95 352.1 337 70.6
Sopen07g023170 Solanum pennellii HOM05D006642 ORTHO05D008856 1.1e-94 351.7 325 72.0
Cfa023538 Carpinus fangiana HOM05D006642 ORTHO05D008856 1.4e-94 351.3 316 73.1
PGSC0003DMG400015924 Solanum tuberosum HOM05D006642 ORTHO05D008856 1.8e-94 350.9 325 72.0
Atru.chr6.2750 Acer truncatum HOM05D006642 ORTHO05D008856 2.4e-94 350.5 310 74.8
Cc05_g00360 Coffea canephora HOM05D006642 ORTHO05D008856 3.1e-94 350.1 321 71.7
Nitab4.5_0007665g0020 Nicotiana tabacum HOM05D006642 ORTHO05D008856 3.1e-94 350.1 306 75.5
Sc14g0005210 Simmondsia chinensis HOM05D006642 ORTHO05D008856 7.0e-94 349.0 326 69.6
Solyc07g043600.4 Solanum lycopersicum HOM05D006642 ORTHO05D008856 7.0e-94 349.0 325 71.7
ATR1098G151 Amborella trichopoda HOM05D006642 ORTHO05D008856 2.0e-93 347.4 332 70.2
Manes.09G006600 Manihot esculenta HOM05D006642 ORTHO05D008856 2.0e-93 347.4 310 72.6
CANSAT64G1219 Cannabis sativa HOM05D006642 ORTHO05D008856 2.7e-93 347.1 306 74.5
Oeu051395.1 Olea europaea HOM05D006642 ORTHO05D008856 3.5e-93 346.7 298 76.2
MD09G1145700 Malus domestica HOM05D006642 ORTHO05D008856 4.5e-93 346.3 331 70.7
CAN.G819.5 Capsicum annuum HOM05D006642 ORTHO05D008856 7.7e-93 345.5 325 70.2
Dinv09723 Davidia involucrata HOM05D006642 ORTHO05D008856 1.0e-92 345.1 330 70.9
Sabra16G0124100 Salix brachista HOM05D006642 ORTHO05D008856 1.0e-92 345.1 307 73.3
HanXRQChr01g0029361 Helianthus annuus HOM05D006642 ORTHO05D008856 1.7e-92 344.4 307 73.0
Potri.001G220300 Populus trichocarpa HOM05D006642 ORTHO05D008856 2.3e-92 344.0 321 71.3
Glyma.10G285200 Glycine max HOM05D006642 ORTHO05D008856 3.8e-92 343.2 303 73.6
PGR142G3441 Punica granatum HOM05D006642 ORTHO05D008856 3.8e-92 343.2 321 72.3
COL.COLO4_29911 Corchorus olitorius HOM05D006642 ORTHO05D008856 5.0e-92 342.8 346 68.2
Glyma.20G103800 Glycine max HOM05D006642 ORTHO05D008856 6.6e-92 342.4 304 73.4
ECA248G0755 Erigeron canadensis HOM05D006642 ORTHO05D008856 8.6e-92 342.0 312 72.8
Lj5g0013784 Lotus japonicus HOM05D006642 ORTHO05D008856 4.3e-91 339.7 325 71.1
TWI23G0590 Tripterygium wilfordii HOM05D006642 ORTHO05D008856 4.3e-91 339.7 326 69.3
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 7.3e-91 339.0 305 73.4
Phvul.007G015300 Phaseolus vulgaris HOM05D006642 ORTHO05D008856 1.2e-90 338.2 304 72.4
Psat6g233520 Pisum sativum HOM05D006642 ORTHO05D008856 2.8e-90 337.0 305 72.5
Actinidia39996 Actinidia chinensis HOM05D006642 ORTHO05D008856 3.6e-90 336.7 325 69.5
Eucgr.K01239 Eucalyptus grandis HOM05D006642 ORTHO05D008856 4.7e-90 336.3 304 73.0
Thecc.01G164600 Theobroma cacao HOM05D006642 ORTHO05D008856 6.1e-90 335.9 301 73.1
Carub.0005s2580 Capsella rubella HOM05D006642 ORTHO05D008856 8.0e-90 335.5 310 72.9
VMungo0720G2195 Vigna mungo HOM05D000164 ORTHO05D000096 8.0e-90 335.5 304 72.4
CARHR169450 Cardamine hirsuta HOM05D006642 ORTHO05D008856 1.4e-89 334.7 310 72.6
Lsat_1_v5_gn_1_49160 Lactuca sativa HOM05D006642 ORTHO05D008856 1.4e-89 334.7 311 65.6
Prupe.3G180100 Prunus persica HOM05D006642 ORTHO05D008856 1.4e-89 334.7 306 73.2
PSO675G5462 Papaver somniferum HOM05D006642 ORTHO05D008856 1.8e-89 334.3 331 70.1
DCAR_023000 Daucus carota HOM05D006642 ORTHO05D008856 3.0e-89 333.6 303 73.3
Sp5g03940 Schrenkiella parvula HOM05D006642 ORTHO05D008856 3.0e-89 333.6 310 72.6
Medtr1g114300 Medicago truncatula HOM05D006642 ORTHO05D008856 8.9e-89 332.0 305 71.5
TPR.G4069 Trifolium pratense HOM05D006642 ORTHO05D008856 1.2e-88 331.6 305 71.5
GSVIVG01020809001 Vitis vinifera HOM05D006642 ORTHO05D008856 1.2e-88 331.6 297 76.4
Duzib147G0394 Durio zibethinus HOM05D006642 ORTHO05D008856 2.0e-88 330.9 296 66.9
AUR62002293 Chenopodium quinoa HOM05D006642 ORTHO05D008856 3.4e-88 330.1 302 71.2
Thhalv10005856m.g Eutrema salsugineum HOM05D006642 ORTHO05D008856 3.4e-88 330.1 310 72.3
unitig_899.g15288 Utricularia gibba HOM05D006642 ORTHO05D008856 3.4e-88 330.1 319 70.5
vmacro19989 Vaccinium macrocarpon HOM05D006642 ORTHO05D008856 7.5e-88 328.9 317 70.0
AT3G59040 Arabidopsis thaliana HOM05D006642 ORTHO05D008856 1.7e-87 327.8 310 71.3
Gorai.012G039700 Gossypium raimondii HOM05D006642 ORTHO05D008856 1.7e-87 327.8 347 67.1
SGA_v2.0_scaffold73G24452 Striga asiatica HOM05D006642 ORTHO05D008856 1.7e-87 327.8 325 68.3
Gohir.A05G380400 Gossypium hirsutum HOM05D006642 ORTHO05D008856 2.2e-87 327.4 347 67.1
THA.LOC104802288 Tarenaya hassleriana HOM05D006642 ORTHO05D008856 2.2e-87 327.4 322 70.2
PSO541G5267 Papaver somniferum HOM05D006642 ORTHO05D008856 2.9e-87 327.0 330 69.4
Ah.07g198470 Amaranthus hybridus HOM05D006642 ORTHO05D008856 3.7e-87 326.6 303 56.4
Ah.07g201920 Amaranthus hybridus HOM05D006642 ORTHO05D008856 6.4e-87 325.9 303 72.3
Hund08483 Selenicereus undatus HOM05D006642 ORTHO05D008856 1.1e-86 325.1 325 66.8
Gohir.D04G035200 Gossypium hirsutum HOM05D006642 ORTHO05D008856 2.4e-86 323.9 347 66.6
Lalb_Chr06g0163881 Lupinus albus HOM05D006642 ORTHO05D008856 4.1e-86 323.2 312 70.2
AUR62015397 Chenopodium quinoa HOM05D006642 ORTHO05D008856 5.4e-86 322.8 353 49.3
Aa31LG10G13530 Aethionema arabicum HOM05D006642 ORTHO05D008856 1.2e-85 321.6 310 69.7
EL10Ac8g19571 Beta vulgaris HOM05D006642 ORTHO05D008856 1.6e-85 321.2 339 65.2
Migut.M00108 Erythranthe guttata HOM05D006642 ORTHO05D008856 1.5e-83 314.7 325 52.3
ClCG11G016650 Citrullus lanatus HOM05D006642 ORTHO05D008856 5.6e-83 312.8 306 69.3
RcHm_v2.0_Chr2g0152561 Rosa chinensis HOM05D006642 ORTHO05D008856 7.3e-83 312.4 315 67.6
CsaV3_4G032160 Cucumis sativus L. HOM05D006642 ORTHO05D008856 6.8e-81 305.8 306 68.0
FAN02G0564 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.2e-80 305.1 306 69.3
FAN05G5081 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.3e-79 301.6 306 69.0
FAN14G1916 Fragaria x ananassa HOM05D006642 ORTHO05D008856 3.7e-79 300.1 306 68.6
FvH4_6g38970 Fragaria vesca HOM05D006642 ORTHO05D008856 1.1e-78 298.5 306 68.3
C08p34230 Brassica napus HOM05D006642 ORTHO05D008856 7.8e-77 292.4 327 65.7
BolC8t51020H Brassica oleracea HOM05D006642 ORTHO05D008856 2.3e-76 290.8 331 64.7
BcaC07g40235 Brassica carinata HOM05D006642 ORTHO05D008856 3.0e-76 290.4 310 67.1
A09p51470 Brassica napus HOM05D006642 ORTHO05D008856 1.5e-75 288.1 326 65.3
Rhsim05G0172300 Rhododendron simsii HOM05D006642 ORTHO05D008856 6.8e-73 279.3 319 63.6
BraA09t40583Z Brassica rapa HOM05D006642 ORTHO05D008856 4.4e-72 276.6 326 63.5
BcaC07g40308 Brassica carinata HOM05D006642 ORTHO05D008856 5.8e-72 276.2 292 68.5
MD17G1132200 Malus domestica HOM05D006642 ORTHO05D008856 6.6e-68 262.7 291 63.2
QL02p091883 Quercus lobata HOM05D006642 ORTHO05D008856 8.6e-68 262.3 324 61.7
QL93p2017_0027 Quercus lobata HOM05D006642 ORTHO05D008856 6.8e-65 252.7 291 65.3
MELO3C026387.2 Cucumis melo HOM05D006642 ORTHO05D008856 3.4e-64 250.4 301 62.1
Haze_13626 Corylus avellana HOM05D006642 ORTHO05D008856 1.0e-60 238.8 211 82.5
Cpa.g.sc50.124 Carica papaya HOM05D006642 ORTHO05D008856 8.6e-60 235.7 310 43.5
HPP92_011074 Vanilla planifolia HOM05D006642 ORTHO05D008856 2.6e-56 224.2 147 73.5
Lj1A585G41 Lonicera japonica HOM05D006642 ORTHO05D008856 7.1e-54 216.1 151 68.2
Nn4g26620 Nelumbo nucifera HOM05D006642 ORTHO05D008856 7.1e-54 216.1 136 74.3
EL10Ac5g11659 Beta vulgaris HOM05D006642 ORTHO05D008856 2.8e-50 204.1 171 56.7
AL5G40920 Arabidopsis lyrata HOM05D006642 ORTHO05D008856 9.9e-48 195.7 196 78.6
CiPaw.03G197600 Carya illinoinensis HOM05D006642 ORTHO05D008856 1.9e-38 164.9 103 77.7
Pp3c26_11100 Physcomitrium patens HOM05D006642 ORTHO05D008856 2.3e-36 157.9 325 44.3
EL10Ac5g11660 Beta vulgaris HOM05D006642 ORTHO05D008856 8.7e-36 156.0 103 74.8
Mapoly0047s0104 Marchantia polymorpha HOM05D006642 ORTHO05D008856 1.4e-33 148.7 276 49.3
C06p25860 Brassica napus HOM05D000461 ORTHO05D001840 1.1e-27 129.0 326 31.9
SMO259G0047 Selaginella moellendorffii HOM05D006642 ORTHO05D008856 3.3e-27 127.5 266 45.5
FAN09G4833 Fragaria x ananassa HOM05D006642 ORTHO05D008856 5.7e-27 126.7 95 62.1
BcaC08g44955 Brassica carinata HOM05D006642 ORTHO05D008856 4.5e-24 117.1 82 65.9
BcaB02g07487 Brassica carinata HOM05D000461 ORTHO05D001840 6.7e-20 103.2 78 62.8
BcaB02g07488 Brassica carinata HOM05D006642 ORTHO05D008856 1.3e-18 99.0 74 67.6
BolC6t37747H Brassica oleracea HOM05D006642 ORTHO05D032904 2.4e-17 94.7 93 55.9
BcaC08g44954 Brassica carinata HOM05D006642 ORTHO05D032904 5.7e-11 73.6 77 53.2
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 2.4e-09 68.2 114 31.6
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 5.3e-09 67.0 114 30.7
Ca_27070_v3 Cicer arietinum L. HOM05D002503 ORTHO05D009151 5.9e-08 63.5 114 26.3
Gohir.D12G065400 Gossypium hirsutum HOM05D000891 ORTHO05D000761 2.5e-06 58.2 108 35.2
Gorai.008G068700 Gossypium raimondii HOM05D000891 ORTHO05D000761 2.5e-06 58.2 108 35.2
CANSAT01G1424 Cannabis sativa HOM05D000891 ORTHO05D000761 5.5e-06 57.0 86 36.0
Lj1A585G40 Lonicera japonica HOM05D006642 ORTHO05D027104 5.5e-06 57.0 31 87.1
DCAR_025928 Daucus carota HOM05D000891 ORTHO05D000761 7.2e-06 56.6 97 39.2
Potri.005G125400 Populus trichocarpa HOM05D000891 ORTHO05D000761 7.2e-06 56.6 110 33.6


User provided reference genes

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