Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 3.3e-167 591.7 303 100.0
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 6.1e-97 358.2 298 65.4
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 7.3e-74 281.6 230 63.9
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 4.4e-71 272.3 250 54.4
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 7.5e-71 271.6 278 52.2
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 2.9e-70 269.6 232 58.2
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 1.4e-69 267.3 230 57.4
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 7.1e-69 265.0 304 49.0
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 9.2e-69 264.6 251 53.8
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.2e-68 264.2 273 50.5
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 1.6e-68 263.8 230 56.5
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 1.6e-68 263.8 269 49.8
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 2.7e-68 263.1 296 48.6
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 2.7e-68 263.1 242 56.6
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 3.5e-68 262.7 276 50.0
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 3.5e-68 262.7 293 49.5
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 4.6e-68 262.3 229 57.2
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 4.6e-68 262.3 275 50.9
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 6.0e-68 261.9 278 49.6
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 1.0e-67 261.2 284 50.7
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.7e-67 260.4 294 49.0
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 1.7e-67 260.4 253 53.4
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 1.7e-67 260.4 275 50.5
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 2.3e-67 260.0 279 49.8
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 2.3e-67 260.0 297 49.2
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 3.0e-67 259.6 266 52.3
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 3.0e-67 259.6 301 47.8
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 3.0e-67 259.6 301 47.8
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 3.0e-67 259.6 301 47.8
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 3.9e-67 259.2 294 49.0
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 5.1e-67 258.8 271 51.3
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 5.1e-67 258.8 286 51.4
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 5.1e-67 258.8 247 53.4
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 6.6e-67 258.5 275 49.5
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 6.6e-67 258.5 272 50.0
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 6.6e-67 258.5 277 49.8
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 8.6e-67 258.1 299 48.5
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 1.5e-66 257.3 274 49.3
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 1.5e-66 257.3 253 52.6
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 1.5e-66 257.3 238 56.7
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 2.5e-66 256.5 249 52.2
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 2.5e-66 256.5 294 48.6
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 2.5e-66 256.5 253 53.4
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 2.5e-66 256.5 291 48.8
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 3.3e-66 256.1 277 50.2
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 3.3e-66 256.1 277 50.2
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 3.3e-66 256.1 277 50.2
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 3.3e-66 256.1 249 52.6
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 3.3e-66 256.1 288 49.7
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 4.3e-66 255.8 258 53.9
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 5.6e-66 255.4 255 51.4
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 7.3e-66 255.0 276 50.0
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 7.3e-66 255.0 300 45.3
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 9.5e-66 254.6 288 49.3
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 9.5e-66 254.6 233 55.4
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 9.5e-66 254.6 281 48.4
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 1.2e-65 254.2 234 53.4
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 1.6e-65 253.8 260 51.9
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.6e-65 253.8 299 47.8
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.6e-65 253.8 299 47.8
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 2.1e-65 253.4 280 50.4
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 2.1e-65 253.4 297 47.8
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 2.1e-65 253.4 258 53.1
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 2.8e-65 253.1 251 52.2
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 3.6e-65 252.7 262 51.5
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 8.1e-65 251.5 236 53.0
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 1.4e-64 250.8 263 49.0
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 1.4e-64 250.8 249 53.0
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 1.8e-64 250.4 274 48.5
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 2.4e-64 250.0 282 48.6
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 2.4e-64 250.0 270 49.6
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 3.1e-64 249.6 251 51.4
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 3.1e-64 249.6 275 49.1
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 3.1e-64 249.6 253 52.2
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 3.1e-64 249.6 291 49.1
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 5.2e-64 248.8 251 51.4
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 6.8e-64 248.4 283 49.1
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 8.9e-64 248.1 300 46.3
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 1.2e-63 247.7 228 55.3
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 1.2e-63 247.7 291 46.4
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 2.0e-63 246.9 192 60.4
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 3.4e-63 246.1 289 47.1
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 4.4e-63 245.7 246 51.6
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 5.8e-63 245.4 263 48.7
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 7.6e-63 245.0 248 50.0
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 9.9e-63 244.6 295 47.1
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 9.9e-63 244.6 227 54.6
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 9.9e-63 244.6 246 51.6
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 1.3e-62 244.2 227 53.3
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 1.3e-62 244.2 246 51.2
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 2.9e-62 243.0 230 53.0
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 4.9e-62 242.3 247 50.2
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 1.1e-61 241.1 271 48.0
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 1.4e-61 240.7 279 48.0
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 1.4e-61 240.7 248 49.6
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 1.9e-61 240.4 232 53.0
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 2.4e-61 240.0 227 54.2
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 4.1e-61 239.2 283 45.9
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 5.4e-61 238.8 247 49.4
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.6e-60 237.3 219 53.0
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 2.7e-60 236.5 271 46.1
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 3.5e-60 236.1 288 47.2
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 6.0e-60 235.3 230 51.3
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 6.0e-60 235.3 256 48.8
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 6.0e-60 235.3 271 45.4
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 7.8e-60 235.0 192 58.9
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 1.7e-59 233.8 271 45.4
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 3.0e-59 233.0 236 50.4
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 3.0e-59 233.0 278 46.4
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 3.9e-59 232.6 286 44.4
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 6.6e-59 231.9 230 53.9
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 1.2e-57 227.6 230 47.8
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 1.2e-57 227.6 275 45.5
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 2.1e-57 226.9 278 45.7
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 2.8e-57 226.5 273 44.3
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 3.6e-57 226.1 276 43.1
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 4.7e-57 225.7 248 52.0
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 8.1e-57 224.9 226 51.3
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.1e-56 224.6 254 46.9
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 1.4e-56 224.2 239 51.0
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 1.8e-56 223.8 273 44.3
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 1.2e-55 221.1 273 44.3
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 1.5e-55 220.7 274 45.3
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 2.0e-55 220.3 273 44.0
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 5.8e-55 218.8 276 46.0
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 3.8e-54 216.1 220 50.9
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 3.8e-54 216.1 239 49.8
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 4.9e-54 215.7 274 45.6
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 6.4e-54 215.3 229 48.0
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 8.4e-54 214.9 275 45.5
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 1.1e-53 214.5 225 48.4
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 1.1e-53 214.5 228 49.6
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 1.4e-53 214.2 239 46.0
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 7.1e-53 211.8 232 47.8
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 9.3e-53 211.5 222 49.5
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 9.3e-53 211.5 223 50.2
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 2.7e-52 209.9 213 49.8
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 2.7e-52 209.9 279 43.7
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 1.1e-50 204.5 255 47.1
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.9e-50 203.8 232 47.4
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 1.9e-50 203.8 269 43.1
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 4.3e-50 202.6 272 43.4
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 4.3e-50 202.6 267 43.8
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 9.6e-50 201.4 232 50.9
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 1.3e-49 201.1 272 43.0
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 3.6e-49 199.5 272 42.6
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 3.6e-49 199.5 272 42.6
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 3.6e-49 199.5 272 42.6
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 4.8e-49 199.1 272 42.6
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 8.1e-49 198.4 219 45.7
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 1.4e-48 197.6 277 41.5
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 5.3e-48 195.7 223 47.1
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 2.0e-47 193.7 225 44.4
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 4.5e-47 192.6 233 43.8
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 2.9e-46 189.9 204 47.1
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 4.9e-46 189.1 226 48.2
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.1e-44 183.7 289 40.5
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 6.0e-44 182.2 257 42.4
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 5.1e-43 179.1 230 45.7
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 1.4e-40 171.0 294 39.1
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 4.0e-40 169.5 320 35.9
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 9.0e-40 168.3 169 52.1
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 6.4e-38 162.2 202 42.6
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 3.9e-35 152.9 223 42.6
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 9.6e-34 148.3 133 53.4
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 6.9e-32 142.1 261 37.5
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 2.9e-30 136.7 155 44.5
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.9e-29 134.0 185 43.2
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 5.5e-29 132.5 99 56.6
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 7.1e-29 132.1 160 46.9
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 7.4e-26 122.1 113 53.1
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 7.6e-23 112.1 94 52.1
Haze_23061 Corylus avellana HOM05D003931 ORTHO05D004577 3.9e-19 99.8 147 43.5
C01p23190 Brassica napus HOM05D003931 ORTHO05D004577 1.7e-14 84.3 90 52.2
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 1.0e-11 75.1 60 58.3
unitig_26.g9960 Utricularia gibba HOM05D003931 ORTHO05D004577 4.5e-07 59.7 83 44.6
unitig_26.g9959 Utricularia gibba HOM05D001404 ORTHO05D026306 7.7e-07 58.9 43 58.1
BcaC09g50623 Brassica carinata HOM05D003931 ORTHO05D004577 2.9e-06 57.0 50 52.0


User provided reference genes

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