Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 3.9e-294 1014.2 568 100.0
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 1.6e-279 965.7 498 96.2
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 8.5e-209 730.7 504 72.6
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 4.9e-148 528.9 504 54.4
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 4.7e-106 389.4 502 42.0
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 1.8e-105 387.5 508 42.7
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 6.7e-105 385.6 517 41.8
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 1.4e-97 361.3 487 44.1
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 1.6e-93 347.8 512 40.6
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 1.9e-91 340.9 519 38.9
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 1.9e-91 340.9 510 40.4
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 6.1e-90 335.9 496 38.9
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 1.4e-89 334.7 541 36.8
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 2.6e-88 330.5 506 37.9
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 3.4e-88 330.1 509 38.1
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 2.8e-87 327.0 519 37.2
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 8.3e-87 325.5 514 38.9
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 1.8e-86 324.3 510 38.0
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 3.1e-86 323.6 511 38.6
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 5.3e-86 322.8 518 37.5
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 9.1e-86 322.0 524 37.6
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 3.5e-85 320.1 549 36.8
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 5.9e-85 319.3 504 36.9
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 2.9e-84 317.0 513 38.0
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 3.8e-84 316.6 502 39.2
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 8.5e-84 315.5 515 36.3
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 7.2e-83 312.4 529 37.6
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 2.1e-82 310.8 487 37.0
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 2.7e-82 310.5 518 37.3
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.0e-81 308.5 508 37.6
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 1.4e-81 308.1 509 37.1
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 1.8e-81 307.8 508 37.6
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 6.8e-81 305.8 546 36.6
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 8.8e-81 305.4 515 37.7
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 1.5e-80 304.7 508 36.4
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 1.5e-80 304.7 523 35.8
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 1.5e-80 304.7 515 37.5
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.0e-80 304.3 508 37.0
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.6e-80 303.9 508 37.0
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 3.4e-80 303.5 495 37.8
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 5.7e-80 302.8 503 36.8
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 7.5e-80 302.4 520 37.1
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 1.7e-79 301.2 500 37.6
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 2.8e-79 300.4 519 37.0
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 8.3e-79 298.9 520 36.9
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 1.8e-78 297.7 502 36.7
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 1.2e-77 295.0 511 35.4
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 1.2e-77 295.0 540 35.0
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 2.0e-77 294.3 504 36.5
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 2.7e-77 293.9 495 35.4
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 3.5e-77 293.5 513 36.5
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 5.9e-77 292.7 512 35.2
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 5.9e-77 292.7 513 36.3
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 1.7e-76 291.2 509 35.2
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 2.3e-76 290.8 516 35.7
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 3.8e-76 290.0 519 36.8
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 3.8e-76 290.0 511 34.8
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 1.9e-75 287.7 498 35.9
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 2.5e-75 287.3 343 44.3
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 2.5e-75 287.3 479 37.0
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 2.8e-74 283.9 538 35.1
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 1.0e-73 282.0 518 37.3
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 1.2e-72 278.5 511 37.4
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 3.4e-72 276.9 512 36.9
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 3.4e-72 276.9 536 34.5
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 3.4e-72 276.9 513 35.3
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 7.5e-72 275.8 482 37.6
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 9.8e-72 275.4 513 32.7
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 1.7e-71 274.6 510 36.9
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 4.9e-71 273.1 519 34.1
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 1.8e-70 271.2 513 36.3
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 1.2e-69 268.5 510 35.3
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 1.6e-69 268.1 476 36.1
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 5.9e-69 266.2 524 33.2
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 8.6e-68 262.3 510 35.9
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 9.5e-67 258.8 519 35.1
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 2.1e-66 257.7 511 34.4
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 2.1e-66 257.7 458 36.5
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 8.9e-65 252.3 495 33.9
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 4.4e-64 250.0 510 33.5
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 1.3e-63 248.4 467 35.5
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 1.9e-62 244.6 520 33.3
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 2.4e-62 244.2 344 41.3
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 6.0e-61 239.6 579 30.1
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 7.8e-61 239.2 349 39.5
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 2.3e-60 237.7 304 43.8
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 2.3e-60 237.7 350 41.4
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 7.3e-59 232.6 385 40.3
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 3.6e-58 230.3 511 34.2
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 6.2e-58 229.6 361 36.3
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 1.4e-57 228.4 500 32.2
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 1.2e-56 225.3 350 38.6
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 4.4e-56 223.4 313 41.9
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 5.8e-56 223.0 332 39.2
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 5.8e-56 223.0 512 30.5
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 1.3e-55 221.9 642 29.0
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 3.7e-55 220.3 329 38.0
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 3.2e-54 217.2 505 29.9
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 8.9e-49 199.1 485 31.5
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 3.5e-45 187.2 261 41.0
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 1.5e-43 181.8 462 31.4
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 2.5e-43 181.0 250 43.2
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 1.6e-42 178.3 419 32.2
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 1.3e-31 142.1 244 37.7
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 4.3e-27 127.1 86 60.5
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 1.4e-25 122.1 293 33.1
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 5.4e-22 110.2 118 49.2
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 4.8e-18 97.1 124 37.1
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 1.4e-17 95.5 155 38.7
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 2.0e-16 91.7 150 38.0
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 3.4e-16 90.9 77 49.4
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 3.8e-15 87.4 78 48.7
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 4.9e-15 87.0 101 42.6
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 4.9e-15 87.0 127 36.2
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 6.5e-15 86.7 88 40.9
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 1.9e-14 85.1 78 44.9
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 2.5e-14 84.7 119 36.1
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 7.1e-14 83.2 123 33.3
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.2e-13 82.4 92 39.1
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 1.2e-13 82.4 82 39.0
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 2.1e-13 81.6 93 36.6
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 3.5e-13 80.9 81 37.0
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 3.5e-13 80.9 88 50.0
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 7.9e-13 79.7 81 37.0
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 7.9e-13 79.7 92 41.3
SEGI_17091 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.8e-12 78.6 198 29.3
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 6.7e-12 76.6 81 37.0
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 1.1e-11 75.9 78 42.3
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 4.3e-11 73.9 84 48.8
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 5.7e-11 73.6 72 40.3
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 5.7e-11 73.6 130 27.7
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 3.7e-10 70.9 383 24.8
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 4.8e-10 70.5 96 36.5
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 1.1e-09 69.3 66 39.4
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 1.1e-09 69.3 104 30.8
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 1.8e-09 68.6 100 29.0
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 5.3e-09 67.0 87 37.9
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 6.5e-07 60.1 77 36.4
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 3.2e-06 57.8 34 55.9


User provided reference genes

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