Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 2.2e-171 605.5 307 100.0
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 5.7e-143 511.1 327 80.7
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 2.4e-101 372.9 328 59.5
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 2.4e-101 372.9 328 59.8
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 1.3e-99 367.1 330 58.5
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 1.7e-99 366.7 330 60.0
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 1.7e-99 366.7 328 58.8
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 1.7e-99 366.7 302 59.9
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 5.1e-99 365.2 328 57.6
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 5.6e-98 361.7 333 58.3
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 5.6e-98 361.7 327 58.7
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 7.3e-98 361.3 308 64.0
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 9.6e-98 360.9 323 59.1
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 1.3e-97 360.5 315 60.6
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 1.6e-97 360.1 328 58.8
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 2.1e-97 359.8 324 59.6
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 2.1e-97 359.8 327 59.6
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 2.8e-97 359.4 328 57.0
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 3.6e-97 359.0 328 57.9
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 3.6e-97 359.0 325 59.1
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 8.1e-97 357.8 325 58.8
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.1e-96 357.5 318 59.1
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 1.4e-96 357.1 325 58.8
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 1.4e-96 357.1 328 59.5
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 1.8e-96 356.7 324 58.0
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 2.4e-96 356.3 328 58.2
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 3.1e-96 355.9 327 56.9
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 3.1e-96 355.9 335 57.3
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 3.1e-96 355.9 328 58.8
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 3.1e-96 355.9 334 58.1
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 4.0e-96 355.5 325 58.5
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 5.3e-96 355.1 332 58.1
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 6.9e-96 354.8 317 59.0
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 6.9e-96 354.8 329 57.8
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 6.9e-96 354.8 326 58.0
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 1.2e-95 354.0 326 58.0
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.5e-95 353.6 318 58.8
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 2.6e-95 352.8 336 57.1
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 5.8e-95 351.7 336 55.7
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 1.3e-94 350.5 336 57.4
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 1.3e-94 350.5 318 58.2
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 1.7e-94 350.1 329 55.0
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 2.2e-94 349.7 324 56.8
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 4.9e-94 348.6 323 57.9
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 6.4e-94 348.2 336 55.1
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 6.4e-94 348.2 326 55.2
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 8.4e-94 347.8 352 53.4
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 3.2e-93 345.9 336 54.8
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 4.2e-93 345.5 332 56.9
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 4.2e-93 345.5 328 56.1
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 4.2e-93 345.5 330 57.9
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 5.4e-93 345.1 321 57.0
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 5.4e-93 345.1 333 55.9
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 5.4e-93 345.1 328 55.8
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 7.1e-93 344.7 326 56.7
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 2.7e-92 342.8 334 56.0
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 4.6e-92 342.0 329 56.2
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 6.0e-92 341.7 342 54.7
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 7.9e-92 341.3 320 57.5
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 7.9e-92 341.3 320 57.5
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 1.0e-91 340.9 328 55.5
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 1.3e-91 340.5 320 56.6
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.5e-90 337.0 362 51.7
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 5.6e-90 335.1 330 53.0
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 2.8e-89 332.8 318 55.3
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 3.6e-89 332.4 312 57.7
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 3.6e-89 332.4 328 55.8
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 8.1e-89 331.3 331 53.8
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 2.4e-88 329.7 311 57.6
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 3.1e-88 329.3 335 52.5
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 3.1e-88 329.3 305 58.7
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 3.1e-88 329.3 305 58.7
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 4.0e-88 328.9 346 51.7
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 9.0e-88 327.8 318 56.6
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 9.0e-88 327.8 305 58.4
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 1.5e-87 327.0 317 57.1
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 2.6e-87 326.2 318 57.2
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 9.9e-87 324.3 317 56.5
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 2.4e-85 319.7 334 53.0
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 3.2e-85 319.3 308 54.9
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 1.2e-84 317.4 308 54.5
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 1.0e-83 314.3 296 57.4
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 3.0e-83 312.8 319 53.9
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 8.7e-83 311.2 309 55.3
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 1.1e-82 310.8 336 51.8
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 3.3e-82 309.3 299 55.9
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 3.7e-81 305.8 312 54.2
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 6.2e-81 305.1 351 49.9
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 3.8e-78 295.8 330 49.7
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 8.4e-78 294.7 285 54.7
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 3.2e-77 292.7 287 55.1
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 7.1e-77 291.6 336 50.0
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 9.3e-77 291.2 336 50.0
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 3.8e-70 269.2 348 46.0
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 1.1e-69 267.7 239 58.6
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 9.3e-69 264.6 312 48.7
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.5e-66 257.3 297 49.5
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 1.5e-63 247.3 312 46.8
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 5.9e-63 245.4 270 50.0
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 2.7e-60 236.5 233 55.8
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 1.4e-56 224.2 460 35.9
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 1.9e-53 213.8 320 42.2
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 3.2e-53 213.0 323 41.2
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 3.0e-51 206.5 327 40.1
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 5.0e-46 189.1 174 57.5
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 1.2e-42 177.9 163 59.5
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 5.7e-42 175.6 140 61.4
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 2.7e-39 166.8 167 55.7
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 5.2e-35 152.5 142 54.9
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 1.8e-32 144.1 133 54.1
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 5.4e-32 142.5 102 63.7
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 2.9e-30 136.7 159 49.1
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 3.6e-28 129.8 154 50.0
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 1.1e-24 118.2 80 66.2
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 3.5e-23 113.2 186 40.3
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 2.9e-17 93.6 132 39.4
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 6.2e-12 75.9 59 55.9
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 4.9e-09 66.2 65 49.2
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 3.2e-08 63.5 83 44.6
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 7.0e-08 62.4 46 60.9
Dinv43550 Davidia involucrata HOM05D006268 ORTHO05D008118 2.7e-07 60.5 47 66.0
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 8.6e-06 55.5 61 42.6


User provided reference genes

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